Variability in the sensitivity among model simulations of permafrost and carbon dynamics in the permafrost region between 1960 and 2009
A. David McGuire, Charles Koven, David M. Lawrence, Joy S. Clein, Jiangyang Xia, Christian Beer, Eleanor J. Burke, Guangsheng Chen, Xiaodong Chen, Christine Delire, Elchin Jafarov, Andrew H. MacDougall, Sergey S. Marchenko, Dmitry J. Nicolsky, Shushi Peng, Annette Rinke, Kazuyuki Saito, Wenxin Zhang, Ramdane Alkama, Theodore J. Bohn, Philippe Ciais, Bertrand Decharme, Altug Ekici, Isabelle Gouttevin, Tomohiro Hajima, Daniel J. Hayes, Duoying Ji, Gerhard Krinner, Dennis P. Lettenmaier, Yiqi Luo, Paul A. Miller, John C. Moore, Vladimir Romanovsky, Christina Schädel, Kevin Schaefer, Edward A.G. Schuur, Benjamin Smith, Tetsuo Sueyoshi, Qianlai Zhuang
2016, Global Biogeochemical Cycles (30) 1015-1037
A significant portion of the large amount of carbon (C) currently stored in soils of the permafrost region in the Northern Hemisphere has the potential to be emitted as the greenhouse gases CO2and CH4 under a warmer climate. In this study we evaluated the variability in the sensitivity of permafrost and...
Age, sex and social influences on adult survival in the cooperatively breeding Karoo Scrub-robin
Penn Lloyd, Thomas E. Martin, Andrew Taylor, Anne Braae, Res Altwegg
2016, Emu (116) 394-401
Among cooperatively breeding species, helpers are hypothesised to increase the survival of breeders by reducing breeder workload in offspring care and increased group vigilance against predators. Furthermore, parental nepotism or other benefits of group living may provide a survival benefit to young that delay dispersal to help. We tested these...
Parallelization of the TRIGRS model for rainfall-induced landslides using the message passing interface
M. Alvioli, R.L. Baum
2016, Environmental Modelling and Software (81) 122-135
We describe a parallel implementation of TRIGRS, the Transient Rainfall Infiltration and Grid-Based Regional Slope-Stability Model for the timing and distribution of rainfall-induced shallow landslides. We have parallelized the four time-demanding execution modes of TRIGRS, namely both the saturated and unsaturated model with finite and infinite soil depth options, within...
Climate change effects on North American inland fish populations and assemblages
Abigail J. Lynch, Bonnie Myers, Cindy Chu, Lisa A. Eby, Jeffrey A. Falke, Ryan P. Kovach, Trevor J. Krabbenhoft, Thomas J. Kwak, John Lyons, Craig P. Paukert, James E. Whitney
2016, Fisheries (41) 346-361
Climate is a critical driver of many fish populations, assemblages, and aquatic communities. However, direct observational studies of climate change impacts on North American inland fishes are rare. In this synthesis, we (1) summarize climate trends that may influence North American inland fish populations and assemblages, (2) compile 31 peer-reviewed...
Dermocystidium sp. infection in Blue Ridge Sculpin captured in Maryland
Vicki S. Blazer, Nathaniel P. Hitt, Craig D. Snyder, Erin Snook, Cynthia R. Adams
2016, Journal of Aquatic Animal Health (28) 143-149
Raised pale cysts were observed on Blue Ridge Sculpin Cottus caeruleomentum during stream fish community surveys in Catoctin Mountain Park, Maryland. When examined histologically, preserved sculpin exhibited multiple cysts containing spherical endospores with a refractile central body characteristic of Dermocystidiumspp. Cysts were not observed on the gills or internally. The...
Simulated effect of topography and soil properties on hydrologic response and landslide potential under variable rainfall conditions in the Oregon Coast Range, USA
Benjamin B. Mirus, Joel B. Smith, Jonathan W. Godt, R.L. Baum, Jeffrey A. Coe
2016, Conference Paper, Landslides and engineered slopes. Experience, theory and practice Proceedings of the 12th International Symposium on Landslides
No abstract available....
Infrastructure system restoration planning using evolutionary algorithms
Steven Corns, Suzanna K. Long, Thomas G. Shoberg
2016, INCOSE International Symposium (26) 1947-1956
This paper presents an evolutionary algorithm to address restoration issues for supply chain interdependent critical infrastructure. Rapid restoration of infrastructure after a large-scale disaster is necessary to sustaining a nation's economy and security, but such long-term restoration has not been investigated as thoroughly as initial rescue and recovery efforts. A...
Community fisheries in eastern South Dakota: Angler demographics, use, and factors influencing satisfaction
Michael J. Greiner, David O. Lucchesi, Steven R. Chipps, Larry M. Gigliotti
2016, Human Dimensions of Wildlife (21) 254-263
We surveyed anglers on five community fishing lakes near Brookings, South Dakota to assess angler use and satisfaction. The community lakes attracted younger anglers when compared to statewide and national averages. Overall, satisfaction was generally high (74%) among anglers fishing community lakes. Logistic regression analysis showed that harvest rate, anglers...
Reply to “Comment on ‘Ground motions from the 2015 Mw 7.8 Gorkha, Nepal, earthquake constrained by a detailed assessment of macroseismic data’ by Stacey S. Martin, Susan E. Hough, and Charleen Hung” by Andrea Tertulliani, Laura Graziani, Corrado Castellano, Alessandra Maramai, and Antonio Rossi
Stacey S. Martin, Susan E. Hough
2016, Seismological Research Letters (87) 957-962
We thank Andrea Tertulliani and his colleagues for their interest in our article on the 2015 Gorkha earthquake (Martin, Hough, et al., 2015), and for their comments pertaining to our study (Tertulliani et al., 2016). Indeed, as they note, a comprehensive assessment of macroseismic effects for an earthquake with far‐reaching...
Earthquake geology and paleoseismology of major strands of the San Andreas fault system
Thomas Rockwell, Katherine M. Scharer, Timothy E. Dawson
2016, Book chapter, Applied geology in California
The San Andreas fault system in California is one of the best-studied faults in the world, both in terms of the long-term geologic history and paleoseismic study of past surface ruptures. In this paper, we focus on the Quaternary to historic data that have been collected from the major strands...
Spawning site fidelity of wild and hatchery lake trout (Salvelinus namaycush) in northern Lake Huron
Thomas Binder, Stephen C. Riley, Christopher Holbrook, Michael J. Hansen, Roger A. Bergstedt, Charles R. Bronte, Ji He, Charles C. Krueger
2016, Canadian Journal of Fisheries and Aquatic Sciences (73) 18-34
Fidelity to high-quality spawning sites helps ensure that adults repeatedly spawn at sites that maximize reproductive success. Fidelity is also an important behavioural characteristic to consider when hatchery-reared individuals are stocked for species restoration, because artificial rearing environments may interfere with cues that guide appropriate spawning site selection. Acoustic telemetry...
Seasonal sediment dynamics shape temperate bedrock reef communities
Jared D. Figurski, Jan Freiwald, Steve I. Lonhart, Curt D. Storlazzi
2016, Marine Ecology Progress Series (552) 19-29
Mobilized seafloor sediment can impact benthic reef communities through burial, scour, and turbidity. These processes are ubiquitous in coastal oceans and, through their influence on the survival, fitness, and interactions of species, can alter the structure and function of benthic communities. In northern Monterey Bay, California, USA, as much as...
Contrasts between channels and backwaters in a large, floodplain river: Testing our understanding of nutrient cycling, phytoplankton abundance, and suspended solids dynamics
Jeffrey N. Houser
2016, Freshwater Science (35) 457-473
In floodplain rivers, variability in hydraulic connectivity interacts with biogeochemistry to determine the distribution of suspended and dissolved substances. Nutrient, chlorophyll a, and suspended solids data spanning longitudinal (5 study reaches across 1300 river km), lateral (main channel and backwaters), and temporal (1994–2011) gradients in the Upper Mississippi River (UMR)...
Comparison of methods to monitor the distribution and impacts of unauthorized travel routes in a border park
Todd C. Esque, Richard D. Inman, Kenneth E. Nussear, Robert Webb, M.M. Girard, J. DeGayner
2016, Natural Areas Journal (36) 248-258
The distribution and abundance of human-caused disturbances vary greatly through space and time and are cause for concern among land stewards in natural areas of the southwestern border-lands between the USA and Mexico. Human migration and border protection along the international boundary create Unauthorized Trail and Road (UTR) networks across...
The impact of onsite wastewater disposal systems on groundwater in areas inundated by Hurricane Sandy in New York and New Jersey
Irene Fisher, Patrick J. Phillips, Kaitlyn Colella, Shawn C. Fisher, Tristen N. Tagliaferri, William T. Foreman, Edward T. Furlong
2016, Marine Pollution Bulletin (107) 509-517
Coastal onsite wastewater disposal systems (OWDS) were inundated by Hurricane Sandy's storm tide. This study compares the shallow groundwater quality (nutrients, pharmaceuticals, and hormones) downgradient of OWDS before and after Hurricane Sandy, where available, and establishes a baseline for wastewater influence on groundwater in coastal communities inundated by Hurricane Sandy....
Rare earths: Market disruption, innovation, and global supply chains
Roderick Eggert, Cyrus Wadia, Corby Anderson, Diana Bauer, Fletcher Fields, Lawrence D. Meinert, Patrick Taylor
2016, Environment and Resources (41) 199-222
Rare earths, sometimes called the vitamins of modern materials, captured public attention when their prices increased more than ten-fold in 2010 and 2011. As prices fell between 2011 and 2016, rare earths receded from public view—but less visibly they became a major focus of innovative activity in companies, government laboratories...
Episodic bedrock erosion by gully-head migration, Colorado High Plains, USA
Francis K. Rengers, G.E. Tucker, Shannon Mahan
2016, Earth Surface Processes and Landforms (41) 1574-1582
This study explores the frequency of bedrock exposure in a soil-mantled low-relief (i.e. non-mountainous) landscape. In the High Plains of eastern Colorado, gully headcuts are among the few erosional features that will incise through the soil mantle to expose bedrock. We measured the last time of bedrock exposure using optically...
Comparison of wastewater-associated contaminants in the bed sediment of Hempstead Bay, New York, before and after Hurricane Sandy
Shawn C. Fisher, Patrick J. Phillips, Bruce J. Brownawell, James Browne
2016, Marine Pollution Bulletin (107) 499-508
Changes in bed sediment chemistry of Hempstead Bay (HB) have been evaluated in the wake of Hurricane Sandy, which resulted in the release of billions of liters of poorly-treated sewage into tributaries and channels throughout the bay. Surficial grab samples (top 5 cm) collected before and (or) after Hurricane...
Flood-inundation maps for Lake Champlain in Vermont and in northern Clinton County, New York
Robert H. Flynn, Laura Hayes
2016, Scientific Investigations Report 2016-5060
Digital flood-inundation maps for an approximately100-mile length of Lake Champlain in Addison, Chittenden, Franklin, and Grand Isle Counties in Vermont and northern Clinton County in New York were created by the U.S. Geological Survey (USGS) in cooperation with the International Joint Commission (IJC). The flood-inundationmaps, which can be accessed through...
Regional variability in bed-sediment concentrations of wastewater compounds, hormones and PAHs for portions of coastal New York and New Jersey impacted by hurricane Sandy
Patrick J. Phillips, Cathy A Gibson, Shawn C. Fisher, Irene Fisher, Timothy J. Reilly, Kelly L. Smalling, Kristin M. Romanok, William T. Foreman, Rhiannon C. ReVello, Michael J. Focazio, Daniel K. Jones
2016, Marine Pollution Bulletin (107) 489-498
Bed sediment samples from 79 coastal New York and New Jersey, USA sites were analyzed for 75 compounds including wastewater associated contaminants, PAHs, and other organic compounds to assess the post-Hurricane Sandy distribution of organic contaminants among six regions. These results provide the first assessment of wastewater compounds, hormones, and...
Use of multiple sequencing technologies to produce a high-quality genome of the fungus Pseudogymnoascus destructans, the causative agent of bat White-Nose syndrome
Kevin P. Drees, Jonathan M. Palmer, Robert Sebra, Jeffrey M. Lorch, Cynthia Chen, ChengCang Wu, Jin Woo Bok, Nancy F. Keller, David S. Blehert, Christina A. Cuomo, Daniel L. Linder, Jeffrey T. Foster
2016, Genome Announcements (4)
White-Nose syndrome has recently emerged as one of the most devastating wildlife diseases recorded, causing widespread mortality in numerous bat species throughout eastern North America. Here, we present an improvised reference genome of the fungal pathogen Pseudogymnoascus destructans for use in comparative genomic studies....
Updated logistic regression equations for the calculation of post-fire debris-flow likelihood in the western United States
Dennis M. Staley, Jacquelyn A. Negri, Jason W. Kean, Jayme L. Laber, Anne C. Tillery, Ann M. Youberg
2016, Open-File Report 2016-1106
Wildfire can significantly alter the hydrologic response of a watershed to the extent that even modest rainstorms can generate dangerous flash floods and debris flows. To reduce public exposure to hazard, the U.S. Geological Survey produces post-fire debris-flow hazard assessments for select fires in the western United States. We use...
Application of SPARROW modeling to understanding contaminant fate and transport from uplands to streams
Scott Ator, Ana Maria Garcia
2016, JAWRA (52) 685-704
Understanding spatial variability in contaminant fate and transport is critical to efficient regional water-quality restoration. An approach to capitalize on previously calibrated spatially referenced regression (SPARROW) models to improve the understanding of contaminant fate and transport was developed and applied to the case of nitrogen in the 166,000 km2 Chesapeake Bay watershed....
Diet of pumas (Puma concolor) in Sonora, Mexico, as determined by GPS kill sites and molecular identified scat, with comments on jaguar (Panthera onca) diet
Ivonne Cassaigne, Rodrigo A. Medellin, Ron W. Thompson, Melanie Culver, Alexander Ochoa, Karla Vargas, Jack L. Childs, Jim Sanderson, Rurik List, Armando Torres-Gomez
2016, Southwestern Naturalist (61) 125-132
We documented puma (Puma concolor) and jaguar (Panthera onca) prey consumption in northeastern Sonora, Mexico, by investigating global positioning system cluster sites (n = 220), and conducting molecular analyses of scat (n = 116) collected between 2011 and 2013. We used camera trap data (n = 8,976 camera days) to estimate relative abundances...
Historical habitat barriers prevent ring-like genetic continuity throughout the distribution of threatened Alameda Striped Racers (Coluber lateralis euryxanthus)
Jonathan Q. Richmond, Dustin A. Wood, Karen Swaim, Robert N. Fisher, Amy G. Vandergast
2016, Herpetologica (72) 202-213
We used microsatellites and mtDNA sequences to examine the mixed effects of geophysical, habitat, and contemporary urban barriers on the genetics of threatened Alameda Striped Racers (Coluber lateralis euryxanthus), a species with close ties to declining coastal scrub and chaparral habitat in the eastern San Francisco Bay area of California....
