Paramyxoviruses of fish
Theodore R. Meyers, William N. Batts
Frederick S. B. Kibenge, Marcos Godoy, editor(s)
2016, Book chapter, Aquaculture virology
The first fish paramyxovirus was isolated from normal adult Chinook salmon returning to a coastal hatchery in Oregon in the fall of 1982. Subsequently, the virus was isolated from other stocks of adult Chinook salmon and one stock of adult coho salmon in California, Oregon, Washington and Alaska, leading to...
Comment on "No evidence of displacement due to wind turbines in breeding grassland songbirds"
Douglas H. Johnson
2016, The Condor (118) 674-675
A recent article published in The Condor: Ornithological Applications by Hale et al. (2014) is entitled, “No evidence of displacement due to wind turbines in breeding grassland songbirds.” The conclusion stated in that title, unfortunately, is based on inappropriate statistical analysis of data collected by the authors. In fact, their data provide evidence...
North American sturgeon otolith morphology
Marc A. Chalupnicki, Dawn E. Dittman
2016, Copeia (104) 260-266
Accurate expedient species identification of deceased sturgeon (Acipenseridae) when external physical characteristic analysis is inconclusive has become a high priority due to the endangered or threatened status of sturgeon species around the world. Examination of otoliths has provided useful information to aid in population management, age and size-class analysis, understanding...
Diel diet of fantail darter in a tributary to Lake Ontario, New York, USA
Marc A. Chalupnicki, James H. Johnson
2016, Journal of Freshwater Ecology (31) 659-664
The foraging behavior of benthic fishes in streams is seldom examined but is vital to the health of the aquatic community. We examined the feeding ecology of the fantail darter (Etheostoma flaballere) in Trout Brook, a tributary of the Salmon River in central New York, USA. Of the six...
Stratigraphy of the north polar layered deposits of Mars from high-resolution topography
Patricio Becerra, Shane Byrne, Michael M. Sori, Sarah Sutton, Kenneth E. Herkenhoff
2016, Journal of Geophysical Research E: Planets (121) 1445-1471
The stratigraphy of the layered deposits of the polar regions of Mars is theorized to contain a record of recent climate change linked to insolation changes driven by variations in the planet's orbital and rotational parameters. In order to confidently link stratigraphic signals to insolation periodicities, a description of the...
Analysis of seafloor change at Breton Island, Gosier Shoals, and surrounding waters, 1869–2014, Breton National Wildlife Refuge, Louisiana
James G. Flocks, Joseph F. Terrano
2016, Open-File Report 2016-1069
Characterizing bathymetric change in coastal environments is an important component in understanding shoreline evolution, especially along barrier island platforms. Bathymetric change is a function of the regional sediment budget, long-term wave and current patterns, and episodic impact from high-energy events such as storms. Human modifications may also cause changes in...
Archive of bathymetry and backscatter data collected in 2014 nearshore Breton and Gosier Islands, Breton National Wildlife Refuge, Louisiana
Nancy T. DeWitt, Jake J. Fredericks, James G. Flocks, Jennifer L. Miselis, Stanley D. Locker, Jack L. Kindinger, Julie Bernier, Kyle W. Kelso, Billy J. Reynolds, Dana S. Wiese, Trevor Browning
2016, Data Series 1005
As part of the Barrier Island Monitoring Project, scientists from the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center conducted nearshore geophysical surveys off Breton and Gosier Islands, Louisiana, in July and August of 2014. To assist the United States Fish and Wildlife Service (USFWS) with restoration...
Baseline coastal oblique aerial photographs collected from Navarre Beach, Florida, to Breton Island, Louisiana, September 18–19, 2015
Karen L. M. Morgan
2016, Data Series 1008
The U.S. Geological Survey (USGS), as part of the National Assessment of Coastal Change Hazards project, conducts baseline and storm-response photography missions to document and understand the changes in vulnerability of the Nation's coasts to extreme storms. On September 18–19, 2015, the USGS conducted an oblique aerial photographic survey...
Future frequencies of extreme weather events in the National Wildlife Refuges of the conterminous U.S.
Sebastian Martinuzzi, Andrew J. Allstadt, Brooke L. Bateman, Patricia J. Heglund, Anna M. Pidgeon, Wayne E. Thogmartin, Stephen J. Vavrus, Volker C. Radeloff
2016, Biological Conservation (201) 327-335
Climate change is a major challenge for managers of protected areas world-wide, and managers need information about future climate conditions within protected areas. Prior studies of climate change effects in protected areas have largely focused on average climatic conditions. However, extreme weather may have stronger effects on wildlife populations and...
The international river interface cooperative: Public domain flow and morphodynamics software for education and applications
Jonathan M. Nelson, Yasuyuki Shimizu, Takaaki Abe, Kazutake Asahi, Mineyuki Gamou, Takuya Inoue, Toshiki Iwasaki, Takaharu Kakinuma, Satomi Kawamura, Ichiro Kimura, Tomoko Kyuka, Richard R. McDonald, Mohamed Nabi, Makoto Nakatsugawa, Francisco J. Simoes, Hiroshi Takebayashi, Yasunori Watanabe
2016, Advances in Water Resources (93) 62-74
This paper describes a new, public-domain interface for modeling flow, sediment transport and morphodynamics in rivers and other geophysical flows. The interface is named after the International River Interface Cooperative (iRIC), the group that constructed the interface and many of the current solvers included in iRIC. The interface is entirely...
Landscape effects of wildfire on permafrost distribution in interior Alaska derived from remote sensing
Dana R. N. Brown, M. Torre Jorgenson, Knut Kielland, David L. Verbyla, Anupma Prakash, Joshua C. Koch
2016, Remote Sensing (8) 1-22
Climate change coupled with an intensifying wildfire regime is becoming an important driver of permafrost loss and ecosystem change in the northern boreal forest. There is a growing need to understand the effects of fire on the spatial distribution of permafrost and its associated ecological consequences. We focus on the...
Noncontact methods for measuring water-surface elevations and velocities in rivers: Implications for depth and discharge extraction
Jonathan M. Nelson, Paul J. Kinzel, Richard R. McDonald, Mark Schmeeckle
2016, Conference Paper, RiverFlow 2016
Recently developed optical and videographic methods for measuring water-surface properties in a noninvasive manner hold great promise for extracting river hydraulic and bathymetric information. This paper describes such a technique, concentrating on the method of infrared videog- raphy for measuring surface velocities and both acoustic (laboratory-based) and laser-scanning (field-based) techniques for...
Teleconnected ocean forcing of Western North American droughts and pluvials during the last millennium
Cody C. Routson, Connie A. Woodhouse, Jonathan T. Overpeck, Julio L. Betancourt, Nicholas P. McKay
2016, Quaternary Science Reviews (146) 238-250
Western North America (WNA) is rich in hydroclimate reconstructions, yet questions remain about the causes of decadal-to-multidecadal hydroclimate variability. Teleconnection patterns preserved in annually-resolved tree-ring reconstructed drought maps, and anomalies in a global network of proxy sea surface temperature (SST) reconstructions, were used to reassess the evidence linking ocean forcing...
Using the North American Breeding Bird Survey to assess broad-scale response of the continent's most imperiled avian community, grassland birds, to weather variability
Jessica Gorzo, Anna M. Pidgeon, Wayne E. Thogmartin, Andrew J. Allstadt, Volker C. Radeloff, Patricia J. Heglund, Stephen J. Vavrus
2016, The Condor (118) 502-512
Avian populations can respond dramatically to extreme weather such as droughts and heat waves, yet patterns of response to weather at broad scales remain largely unknown. Our goal was to evaluate annual variation in abundance of 14 grassland bird species breeding in the northern mixed-grass prairie in relation to annual...
sbtools: A package connecting R to cloud-based data for collaborative online research
Luke Winslow, Scott Chamberlain, Alison P. Appling, Jordan S. Read
2016, The R Journal (8) 387-398
The adoption of high-quality tools for collaboration and reproducible research such as R and Github is becoming more common in many research fields. While Github and other version management systems are excellent resources, they were originally designed to handle code and scale poorly to large text-based or binary datasets. A...
Damage and recovery assessment of the Philippines' mangroves following Super Typhoon Haiyan
Jordan Long, Chandra Giri, Jurgene H. Primavera, Mandar Trivedi
2016, Marine Pollution Bulletin (109) 734-743
We quantified mangrove disturbance resulting from Super Typhoon Haiyan using a remote sensing approach. Mangrove areas were mapped prior to Haiyan using 30 m Landsat imagery and a supervised decision-tree classification. A time sequence of 250 m eMODIS data was used to monitor mangrove condition prior to, and following, Haiyan. Based on...
Electrofishing effort requirements for estimating species richness in the Kootenai River, Idaho
Carson J. Watkins, Michael C. Quist, Bradley B. Shepard, Susan C. Ireland
2016, Northwest Science (90) 315-327
This study was conducted on the Kootenai River, Idaho to provide insight on sampling requirements to optimize future monitoring effort associated with the response of fish assemblages to habitat rehabilitation. Our objective was to define the electrofishing effort (m) needed to have a 95% probability of sampling 50, 75, and...
Does resolution of flow field observation influence apparent habitat use and energy expenditure in juvenile coho salmon?
Desiree D. Tullos, Cara Walter, Jason B. Dunham
2016, Water Resources Research (52) 5938-5950
This study investigated how the resolution of observation influences interpretation of how fish, juvenile Coho Salmon (Oncorhynchus kisutch), exploit the hydraulic environment in streams. Our objectives were to evaluate how spatial resolution of the flow field observation influenced: (1) the velocities considered to be representative of habitat units; (2) patterns...
Fortnightly modulation of San Andreas tremor and low-frequency earthquakes
Nicholas van der Elst, Andrew Delorey, David R. Shelly, Paul Johnson
2016, Proceedings of the National Academy of Sciences (113) 8601-8605
Earth tides modulate tremor and low-frequency earthquakes (LFEs) on faults in the vicinity of the brittle−ductile (seismic−aseismic) transition. The response to the tidal stress carries otherwise inaccessible information about fault strength and rheology. Here, we analyze the LFE response to the fortnightly tide, which modulates the amplitude of the daily...
Structured decision making for managing pneumonia epizootics in bighorn sheep
Sarah N. Sells, Michael S. Mitchell, Victoria L. Edwards, Justin A. Gude, Neil J. Anderson
2016, Journal of Wildlife Management (80) 957-969
Good decision-making is essential to conserving wildlife populations. Although there may be multiple ways to address a problem, perfect solutions rarely exist. Managers are therefore tasked with identifying decisions that will best achieve desired outcomes. Structured decision making (SDM) is a method of decision analysis used to identify the most...
Urban base flow with low impact development
Aditi Bhaskar, Dianna M. Hogan, Stacey A. Archfield
2016, Hydrological Processes (30) 3156-3171
A novel form of urbanization, low impact development (LID), aims to engineer systems that replicate natural hydrologic functioning, in part by infiltrating stormwater close to the impervious surfaces that generate it. We sought to statistically evaluate changes in a base flow regime because of urbanization with LID, specifically changes in...
Field scale test of multi-dimensional flow and morphodynamic simulations used for restoration design analysis
Richard R. McDonald, Jonathan M. Nelson, Ryan L. Fosness, Peter O. Nelson
George Constantinescu, Marcelo H. Garcia, Dan Hanes, editor(s)
2016, Conference Paper, RiverFlow 2016
Two- and three-dimensional morphodynamic simulations are becoming common in studies of channel form and process. The performance of these simulations are often validated against measurements from laboratory studies. Collecting channel change information in natural settings for model validation is difficult because it can be expensive and under most channel forming...
Adaptive harvest management for the Svalbard population of pink‐footed geese: 2016 progress summary: Technical Report from DCE – Danish Centre for Environment and Energy, No. 86
Fred A. Johnson, Jesper Madsen
2016, Report
This document describes progress to date on the development of an adaptive harvest management strategy for maintaining the Svalbard population of pink‐footed geese (Anser brachyrhynchus) near their agreed target level (60,000) by providing for sustainable harvests in Norway and Denmark. This report provides an assessment of the most recent monitoring information...
Comment on “Geochemistry of buried river sediments from Ghaggar Plains, NW India: Multi-proxy records of variations in provenance, paleoclimate, and paleovegetation patterns in the late quaternary” by Ajit Singh, Debajyoti Paul, Rajiv Sinha, Kristina J. Thomsen, Sanjeev Gupta
Peter D. Clift, Liviu Giosan, Amy E. East
2016, Palaeogeography, Palaeoclimatology, Palaeoecology (455) 65-67
Singh et al. (2016) published a geochemical record of sediment compositions from the flood plain of the Ghaggar River in western India and use the changing provenance, particularly as traced by Nd isotope composition, to reconstruct how erosion patterns have changed over the past 100 k.y. In doing so they...
Advancing environmental flow science: Developing frameworks for altered landscapes and integrating efforts across disciplines.
Shannon K. Brewer, Ryan A. McManamay, Andrew D. Miller, Robert Mollenhauer, Thomas A. Worthington, Tom Arsuffi
2016, Environmental Management (58) 175-192
Environmental flows represent a legal mechanism to balance existing and future water uses and sustain non-use values. Here, we identify current challenges, provide examples where they are important, and suggest research advances that would benefit environmental flow science. Specifically, environmental flow science would benefit by (1) developing approaches...