Application of a hybrid model to reduce bias and improve precision in population estimates for elk (Cervus elaphus) inhabiting a cold desert ecosystem
Kathryn A. Schoenecker, Bruce C. Lubow
2016, Journal of King Saud University - Science (28) 205-215
Accurately estimating the size of wildlife populations is critical to wildlife management and conservation of species. Raw counts or “minimum counts” are still used as a basis for wildlife management decisions. Uncorrected raw counts are not only negatively biased due to failure to account for undetected animals, but also provide...
Predicting arsenic in drinking water wells of the Central Valley, California
Joseph D. Ayotte, Bernard T. Nolan, JoAnn M. Gronberg
2016, Environmental Science & Technology (50) 7555-7563
Probabilities of arsenic in groundwater at depths used for domestic and public supply in the Central Valley of California are predicted using weak-learner ensemble models (boosted regression trees, BRT) and more traditional linear models (logistic regression, LR). Both methods captured major processes that affect arsenic concentrations, such as the chemical...
Acid mine drainage
Jerry M. Bigham, Charles A. Cravotta
2016, Book chapter, Encyclopedia of Soil Science, Third Edition
Acid mine drainage (AMD) consists of metal-laden solutions produced by the oxidative dissolution of iron sulfide minerals exposed to air, moisture, and acidophilic microbes during the mining of coal and metal deposits. The pH of AMD is usually in the range of 2–6, but mine-impacted waters at circumneutral pH (5–8)...
The statistical power to detect cross-scale interactions at macroscales
Tyler Wagner, C. Emi Fergus, Craig A. Stow, Kendra S. Cheruvelil, Patricia A. Soranno
2016, Ecosphere (7)
Macroscale studies of ecological phenomena are increasingly common because stressors such as climate and land-use change operate at large spatial and temporal scales. Cross-scale interactions (CSIs), where ecological processes operating at one spatial or temporal scale interact with processes operating at another scale, have been documented in a variety of...
Finite-element modelling of physics-based hillslope hydrology, Keith Beven, and beyond
Keith Loague, Brian A. Ebel
2016, Hydrological Processes (30) 2432-2437
Keith Beven is a voice of reason on the intelligent use of models and the subsequent acknowledgement/assessment of the uncertainties associated with environmental simula-tion. With several books and hundreds of papers, Keith’s work is widespread, well known, and highly referenced. Four of Keith’s most notable contributions are the iconic TOPMODEL...
Potential carbon emissions dominated by carbon dioxide from thawed permafrost soils
Christina Schädel, Martin K.-F. Bader, Edward A.G. Schuur, Christina Biasi, Rosvel Bracho, Petr Capek, Sarah De Baets, Katerina Diakova, Jessica Ernakovich, Cristian Estop-Aragones, David E. Graham, Iain P. Hartley, Colleen M. Iversen, Evan S. Kane, Christian Knoblauch, Massimo Lupascu, Pertti J. Martikainen, Susan M. Natali, Richard J. Norby, Jonathan A. O’Donnell, Taniya Roy Chowdhury, Hana Santruckova, Gaius Shaver, Victoria L. Sloan, Claire C. Treat, Merritt R. Turetsky, Mark P. Waldrop, Kimberly P. Wickland
2016, Nature Climate Change (6) 950-953
Increasing temperatures in northern high latitudes are causing permafrost to thaw, making large amounts of previously frozen organic matter vulnerable to microbial decomposition. Permafrost thaw also creates a fragmented landscape of drier and wetter soil conditions that determine the amount and form (carbon dioxide (CO2), or methane (CH4)) of carbon (C) released...
Factors that affect parasitism of black-tailed prairie dogs by fleas
David A. Eads, John L. Hoogland
2016, Ecosphere (7) 1-12
Fleas (Insecta: Siphonaptera) are hematophagous ectoparasites that feed on vertebrate hosts. Fleas can reduce the fitness of hosts by interfering with immune responses, disrupting adaptive behaviors, and transmitting pathogens. The negative effects of fleas on hosts are usually most pronounced when fleas attain high densities. In lab studies, fleas desiccate...
Bayesian nitrate source apportionment to individual groundwater wells in the Central Valley by use of elemental and isotopic tracers
Katherine M Ransom, Mark N. Grote, Amanda Deinhart, Gary Eppich, Carol Kendall, Matthew E. Sanborn, A. Kate Sounders, Joshua Wimpenny, Qing-zhu Yin, Megan B. Young, Thomas Harter
2016, Water Resources Research (52) 5577-5597
Groundwater quality is a concern in alluvial aquifers that underlie agricultural areas, such as in the San Joaquin Valley of California. Shallow domestic wells (less than 150 m deep) in agricultural areas are often contaminated by nitrate. Agricultural and rural nitrate sources include dairy manure, synthetic fertilizers, and septic waste....
Contrasts between channels and backwaters in a large, floodplain river: Testing our understanding of nutrient cycling, phytoplankton abundance, and suspended solids dynamics
Jeffrey N. Houser
2016, Freshwater Science (35) 457-473
In floodplain rivers, variability in hydraulic connectivity interacts with biogeochemistry to determine the distribution of suspended and dissolved substances. Nutrient, chlorophyll a, and suspended solids data spanning longitudinal (5 study reaches across 1300 river km), lateral (main channel and backwaters), and temporal (1994–2011) gradients in the Upper Mississippi River (UMR)...
Reproduction in moose at their southern range limit
Joel S. Ruprecht, Kent Hersey, Konrad Hafen, Kevin L. Monteith, Nicholas J. DeCesare, Matthew J. Kauffman, Daniel R. MacNulty
2016, Journal of Mammalogy (97) 1355-1365
Reproduction is a critical fitness component in large herbivores. Biogeographic models predict that populations occurring at the edges of the range may have compromised reproductive rates because of inferior habitat at range peripheries. When reproductive rates are chronically low, ungulate populations may lack the resiliency to rebound quickly after periods...
Large herbivores surf waves of green-up during spring
Jerod Merkle, Kevin L. Monteith, Ellen O. Aikens, Matthew M. Hayes, Kent Hersey, Arthur D. Middleton, Brendan Oates, Hall Sawyer, Brandon Scurlock, Matthew J. Kauffman
2016, Proceedings of the Royal Society B: Biological Sciences (283) 1-8
The green wave hypothesis (GWH) states that migrating animals should track or ‘surf’ high-quality forage at the leading edge of spring green-up. To index such high-quality forage, recent work proposed the instantaneous rate of green-up (IRG), i.e. rate of change in the normalized difference vegetation index over time. Despite this...
Age, sex and social influences on adult survival in the cooperatively breeding Karoo Scrub-robin
Penn Lloyd, Thomas E. Martin, Andrew Taylor, Anne Braae, Res Altwegg
2016, Emu (116) 394-401
Among cooperatively breeding species, helpers are hypothesised to increase the survival of breeders by reducing breeder workload in offspring care and increased group vigilance against predators. Furthermore, parental nepotism or other benefits of group living may provide a survival benefit to young that delay dispersal to help. We tested these...
Climate change effects on North American inland fish populations and assemblages
Abigail J. Lynch, Bonnie Myers, Cindy Chu, Lisa A. Eby, Jeffrey A. Falke, Ryan P. Kovach, Trevor J. Krabbenhoft, Thomas J. Kwak, John Lyons, Craig P. Paukert, James E. Whitney
2016, Fisheries (41) 346-361
Climate is a critical driver of many fish populations, assemblages, and aquatic communities. However, direct observational studies of climate change impacts on North American inland fishes are rare. In this synthesis, we (1) summarize climate trends that may influence North American inland fish populations and assemblages, (2) compile 31 peer-reviewed...
Decision-making for foot-and-mouth disease control: Objectives matter
William J. M. Probert, Katriona Shea, Christopher J. Fonnesbeck, Michael C. Runge, Tim E. Carpenter, Salome Durr, M. Graeme Garner, Neil Harvey, Mark A. Stevenson, Colleen T. Webb, Marleen Werkman, Michael J. Tildesley, Matthew J. Ferrari
2016, Epidemics (15) 10-19
Formal decision-analytic methods can be used to frame disease control problems, the first step of which is to define a clear and specific objective. We demonstrate the imperative of framing clearly-defined management objectives in finding optimal control actions for control of disease outbreaks. We illustrate an analysis that can be...
Geology and hydrocarbon potential of the Dead Sea Rift Basins of Israel and Jordan
James L. Coleman, Uri S. ten Brink
2016, GCSSEPM Foundation Perkins-Rosen Research Conference Proceedings (34) 521-553
Following its middle Miocene inception, numerous basins of varying lengths and depths developed along the Dead Sea fault zone, a large continental transform plate boundary. The modern day left-lateral fault zone has an accumulated left-lateral offset of 105 to 110 km (65 to 68 mi). The deepest basin along...
Effects of seasonal weather on breeding phenology and reproductive success of alpine ptarmigan in Colorado
Gregory T. Wann, Cameron L. Aldridge, Clait E. Braun
2016, PLoS ONE (11) 1-16
Animal populations occurring at high elevations are often assumed to be in peril of extinctions or local extirpations due to elevational-dispersal limitations and thermoregulatory constraints as habitats change and warm. However, long-term monitoring of high-elevation populations is uncommon relative to those occurring at lower elevations, and evidence supporting this assumption...
Probability distributions of bed load particle velocities, accelerations, hop distances, and travel times informed by Jaynes's principle of maximum entropy
David Furbish, Mark Schmeeckle, Rina Schumer, Siobhan Fathel
2016, Journal of Geophysical Research F: Earth Surface (121) 1373-1390
We describe the most likely forms of the probability distributions of bed load particle velocities, accelerations, hop distances, and travel times, in a manner that formally appeals to inferential statistics while honoring mechanical and kinematic constraints imposed by equilibrium transport conditions. The analysis is based on E. Jaynes's elaboration of...
Peat in 2015
Lori E. Apodaca
2016, Mining Engineering (68) 30-30
No abstract available....
Rare Earths, 2015
Joseph Gambogi
2016, Mining Engineering (68) 30-30
No abstract available....
National Park Service Vegetation Mapping Inventory Program: Natchez Trace Parkway vegetation mapping project report
Kevin D. Hop, Andrew C. Strassman, Carl Nordman, Milo Pyne, Rickie White, Joseph Jakusz, Erin E. Hoy, Jennifer Dieck
2016, Natural Resource Report NPS/GULN/NRR—2016/1255
The National Park Service (NPS) Vegetation Mapping Inventory (VMI) Program is an effort to classify, describe, and map existing vegetation of national park units for the NPS Natural Resource Inventory and Monitoring (I&M) Program. The NPS VMI Program is managed by the NPS I&M Division and provides baseline vegetation information...
Automated mapping of persistent ice and snow cover across the western U.S. with Landsat
David J. Selkowitz, Richard R. Forster
2016, ISPRS Journal of Photogrammetry and Remote Sensing (117) 126-140
We implemented an automated approach for mapping persistent ice and snow cover (PISC) across the conterminous western U.S. using all available Landsat TM and ETM+ scenes acquired during the late summer/early fall period between 2010 and 2014. Two separate validation approaches indicate this dataset provides...
Strontium in 2015
Joyce A. Ober
2016, Mining Engineering (68) 30-30
No abstract available....
Fire clay in 2015
Daniel Flanagan
2016, Mining Engineering (68) 41-42
No abstract available....
Earthquake geology and paleoseismology of major strands of the San Andreas fault system
Thomas Rockwell, Katherine M. Scharer, Timothy E. Dawson
2016, Book chapter, Applied geology in California
The San Andreas fault system in California is one of the best-studied faults in the world, both in terms of the long-term geologic history and paleoseismic study of past surface ruptures. In this paper, we focus on the Quaternary to historic data that have been collected from the major strands...
A point mutation in the polymerase protein PB2 allows a reassortant H9N2 influenza isolate of wild-bird origin to replicate in human cells.
Islam T.M. Hussein, Eric J. Ma, Brandt W. Meixell, Nichola J. Hill, Mark S. Lindberg, Randy A. Albrecht, Justin Bahl, Jonathan A. Runstadler
2016, Infection, Genetics and Evolution (41) 279-288
H9N2 influenza A viruses are on the list of potentially pandemic subtypes. Therefore, it is important to understand how genomic reassortment and genetic polymorphisms affect phenotypes of H9N2 viruses circulating in the wild bird reservoir. A comparative genetic analysis of North American H9N2 isolates of wild bird origin identified a...
