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Not all publications have extents, not all extents are completely accurate
A multidimensional representation model of geographic features
E. Lynn Usery, George Timson, Mark Coletti
2016, Open-File Report 2015-1241
A multidimensional model of geographic features has been developed and implemented with data from The National Map of the U.S. Geological Survey. The model, programmed in C++ and implemented as a feature library, was tested with data from the National Hydrography Dataset demonstrating the capability to handle changes in feature...
Spatial and temporal variation in positioning probability of acoustic telemetry arrays: Fine-scale variability and complex interactions
Thomas Binder, Christopher Holbrook, Todd A. Hayden, Charles C. Krueger
2016, Animal Biotelemetry (4)
Background As popularity of positional acoustic telemetry systems increases, so does the need to better understand how they perform in real-world applications, where variation in performance can bias study conclusions. Studies assessing variability in positional telemetry system performance have focused primarily on position accuracy, or comparing...
Will it rise or will it fall? Managing the complex effects of urbanization on base flow
Aditi Bhaskar, Leah Beesley, Matthew J. Burns, T. D. Fletcher, Perrine Hamel, Carolyn Oldham, Allison H. Roy
2016, Freshwater Science (35) 293-310
Sustaining natural levels of base flow is critical to maintaining ecological function as stream catchments are urbanized. Research shows a variable response of stream base flow to urbanization, with base flow or water tables rising in some locations, falling in others, or elsewhere remaining constant. The variable baseflow response is...
Hyperspectral narrowband and multispectral broadband indices for remote sensing of crop evapotranspiration and its components (transpiration and soil evaporation)
Michael T. Marshall, Prasad S. Thenkabail, Trent Biggs, Kirk Post
2016, Agricultural and Forest Meteorology (218-219) 122-134
Evapotranspiration (ET) is an important component of micro- and macro-scale climatic processes. In agriculture, estimates of ET are frequently used to monitor droughts, schedule irrigation, and assess crop water productivity over large areas. Currently, in situ measurements of ET are difficult to scale up for regional applications, so remote sensing...
Inhibition of Akt enhances the chemopreventive effects of topical rapamycin in mouse skin
Sally E Dickinson, Jaroslav Janda, Jane Criswell, Karen Blohm-Mangone, Erik R. Olson, Zhonglin Liu, Christie Barber, Jadrian J. Rusche, Emmanuel Petricoin III, Valerie Calvert, Janine G. Einspahr, Jesse E. Dickinson, Steven P. Stratton, Clara Curiel-Lewandrowski, Kathylynn Saboda, Chengcheng Hu, Ann M. Bode, Zigang Dong, David S. Alberts, G. Timothy Bowden
2016, Cancer Prevention Research (9) 215-224
The PI3Kinase/Akt/mTOR pathway has important roles in cancer development for multiple tumor types, including UV-induced non-melanoma skin cancer. Immunosuppressed populations are at increased risk of aggressive cutaneous squamous cell carcinoma (SCC). Individuals who are treated with rapamycin, (sirolimus, a classical mTOR inhibitor) have significantly decreased rates of developing new cutaneous...
Elevational speciation in action? Restricted gene flow associated with adaptive divergence across an altitudinal gradient
W. C. Funk, M.A. Murphy, K. L. Hoke, Erin L. Muths, Staci M. Amburgey, Emily M. Lemmon, A. R. Lemmon
2016, Journal of Evolutionary Biology (29) 241-252
Evolutionary theory predicts that divergent selection pressures across elevational gradients could cause adaptive divergence and reproductive isolation in the process of ecological speciation. Although there is substantial evidence for adaptive divergence across elevation, there is less evidence that this restricts gene flow. Previous work in the boreal chorus frog (Pseudacris...
Compilation of VS30 Data for the United States
Alan Yong, Eric M. Thompson, David J. Wald, Keith L. Knudsen, Jack K. Odum, William J. Stephenson, Scott Haefner
2016, Data Series 978
VS30, the time-averaged shear-wave velocity (VS) to a depth of 30 meters, is a key index adopted by the earthquake engineering community to account for seismic site conditions. VS30 is typically based on geophysical measurements of VS derived from invasive and noninvasive techniques at sites of interest. Owing to cost considerations, as well as...
Survival, movement, and health of hatchery-raised juvenile Lost River suckers within a mesocosm in Upper Klamath Lake, Oregon
Danielle M. Hereford, Summer M. Burdick, Diane G. Elliott, Amari Dolan-Caret, Carla M. Conway, Alta C. Harris
2016, Open-File Report 2016-1012
The recovery of endangered Lost River suckers (Deltistes luxatus) in Upper Klamath Lake is limited by poor juvenile survival and failure to recruit into the adult population. Poor water quality, degradation of rearing habitat, and toxic levels of microcystin are hypothesized to contribute to low juvenile survival. Studies of wild...
A submarine landslide source for the devastating 1964 Chenega tsunami, southern Alaska
Daniel S. Brothers, Peter J. Haeussler, Lee Liberty, David Finlayson, Eric L. Geist, Keith A. Labay, Michael Byerly
2016, Earth and Planetary Science Letters (438) 112-121
During the 1964 Great Alaska earthquake (Mw 9.2), several fjords, straits, and bays throughout southern Alaska experienced significant tsunami runup of localized, but unexplained origin. Dangerous Passage is a glacimarine fjord in western Prince William Sound, which experienced a tsunami that devastated the village of...
Late Paleocene glyptosaur (Reptilia: Anguidae) osteoderms from South Carolina, USA
David J. Cicimurri, James L. Knight, Jean Self-Trail, Sandy M. Ebersole
2016, Journal of Paleontology (90) 147-153
Heavily tuberculated glyptosaur osteoderms were collected in an active limestone quarry in northern Berkeley County, South Carolina. The osteoderms are part of a highly diverse late Paleocene vertebrate assemblage that consists of marine, terrestrial, fluvial, and/or brackish water taxa, including chondrichthyan and osteichthyan fish, turtles (chelonioid, trionychid, pelomedusid, emydid), crocodilians,...
Apatite fission-track evidence for regional exhumation in the subtropical Eocene, block faulting, and localized fluid flow in east-central Alaska
Cynthia Dusel-Bacon, Charles R. Bacon, Paul B. O'Sullivan, Warren C. Day
2016, Canadian Journal of Earth Sciences (53) 260-280
The origin and antiquity of the subdued topography of the Yukon–Tanana Upland (YTU), the physiographic province between the Denali and Tintina faults, are unresolved questions in the geologic history of interior Alaska and adjacent Yukon. We present apatite fission-track (AFT) results for 33 samples from the 2300 km2 western Fortymile...
Functional metagenomic selection of RubisCOs from uncultivated bacteria
Vanessa A Varaljay, Sriram Satagopan, Justin A. North, Briana Witteveen, Manuella N. Dourado, Karthik Anantharaman, Mark A. Arbing, Shelley McCann, Ronald S. Oremland, Jillian F. Banfield, Kelly C. Wrighton, F. Robert Tabita
2016, Environmental Microbiology (18) 1187-1199
Ribulose 1,5-bisphosphate carboxylase/oxygenase (RubisCO) is a critical yet severely inefficient enzyme that catalyses the fixation of virtually all of the carbon found on Earth. Here, we report a functional metagenomic selection that recovers physiologically active RubisCO molecules directly from uncultivated and largely unknown members of natural microbial communities. Selection is...
Multiple rod–cone and cone–rod photoreceptor transmutations in snakes: Evidence from visual opsin gene expression
Bruno F Simoe, Filipa L. Sampaio, Ellis R. Loew, Kate L. Sanders, Robert N. Fisher, Nathan S. Hart, David M. Hunt, Julian C. Partridge, David J. Gower
2016, Proceedings of the Royal Society B (283)
In 1934, Gordon Walls forwarded his radical theory of retinal photoreceptor ‘transmutation’. This proposed that rods and cones used for scotopic and photopic vision, respectively, were not fixed but could evolve into each other via a series of morphologically distinguishable intermediates. Walls' prime evidence came from series of diurnal and...
Survival and growth of freshwater pulmonate and nonpulmonate snails in 28-day exposures to copper, ammonia, and pentachlorophenol
John M. Besser, Rebecca A. Dorman, Douglas K. Hardesty, Christopher G. Ingersoll
2016, Archives of Environmental Contamination and Toxicology (70) 321-331
We performed toxicity tests with two species of pulmonate snails (Lymnaea stagnalis and Physa gyrina) and four taxa of nonpulmonate snails in the family Hydrobiidae (Pyrgulopsis robusta,Taylorconcha serpenticola, Fluminicola sp., and Fontigens aldrichi). Snails were maintained in static-renewal...
Determining generic velocity and density models for crustal amplification calculations, with an update of the Boore and Joyner (1997) Generic Site Amplification for Graphic Site Amplification
David Boore
2016, Bulletin of the Seismological Society of America (106) 316-320
This short note contains two contributions related to deriving depth‐dependent velocity and density models for use in computing generic crustal amplifications. The first contribution is a method for interpolating two velocity profiles to obtain a third profile with a time‐averaged velocity  to depth Z that is equal...
Predicting thermally stressful events in rivers with a strategy to evaluate management alternatives
K.O. Maloney, J. C. Cole, M. Schmid
2016, River Research and Applications 1428-1437
Water temperature is an important factor in river ecology. Numerous models have been developed to predict river temperature. However, many were not designed to predict thermally stressful periods. Because such events are rare, traditionally applied analyses are inappropriate. Here, we developed two logistic regression models to predict thermally stressful events...
A salt diapir-related Mississippi Valley-type deposit: The Bou Jaber Pb-Zn-Ba-F deposit, Tunisia: Fluid inclusion and isotope study
Salah Bouhlel, David Leach, Craig A. Johnson, Erin E. Marsh, Sihem Salmi-Laouar, David A. Banks
2016, Mineralium Deposita (51) 749-780
The Bou Jaber Ba-F-Pb-Zn deposit is located at the edge of the Bou Jaber Triassic salt diapir in the Tunisia Salt Diapir Province. The ores are unconformity and fault-controlled and occur as subvertical column-shaped bodies developed in dissolution-collapse breccias and in cavities within the Late Aptian platform carbonate rocks, which...
Oriental bittersweet (Celastrus orbiculatus): Spreading by fire
Noel B. Pavlovic, Stacey A. Leicht-Young, Ralph Grundel
2016, Forest Ecology and Management (364) 183-194
In many forest ecosystems, fire is critical in maintaining indigenous plant communities, but can either promote or arrest the spread of invasive species depending on their regeneration niche and resprouting ability. We examined the effects of cutting and burning treatments on the vegetative response (cover, stem density) and root resources...
Characterization of available light for seagrass and patch reef productivity in Sugarloaf Key, Lower Florida Keys
Gerardo Toro-Farmer, Frank E. Muller-Karger, Maria Vega-Rodriguez, Nelson Melo, Kimberly K. Yates, Elizabeth Johns, Sergio Cerdeira-Estrada, Stan R. Herwitz
2016, Remote Sensing (8) 1-20
Light availability is an important factor driving primary productivity in benthic ecosystems, but in situ and remote sensing measurements of light quality are limited for coral reefs and seagrass beds. We evaluated the productivity responses of a patch reef and a seagrass site in the Lower Florida Keys to ambient...
Land uses, fire, and invasion: Exotic annual Bromus and human dimensions
David A. Pyke, Jeanne C. Chambers, Jeffrey L. Beck, Matthew L. Brooks, Brian A. Mealor
2016, Book chapter, Exotic brome-grasses in arid and semiarid ecosystems of the western US
Human land uses are the primary cause of the introduction and spread of exotic annual Bromus species. Initial introductions were likely linked to contaminated seeds used by homesteading farmers in the late 1880s and early 1900s. Transportation routes aided their spread. Unrestricted livestock grazing from the 1800s through...
Plant community resistance to invasion by Bromus species: The roles of community attributes, Bromus interactions with plant communities, and Bromus traits
Jeanne Chambers, Matthew J. Germino, Jayne Belnap, Cynthia Brown, Eugene W. Schupp, Samuel B St. Clair
2016, Book chapter, Exotic brome-grasses in arid and semiarid ecosystems of the western US
The factors that determine plant community resistance to exotic annual Bromus species (Bromus hereafter) are diverse and context specific. They are influenced by the environmental characteristics and attributes of the community, the traits of Bromus species, and the direct and indirect interactions of <i...
Introduction: Exotic annual Bromus in the western USA
Matthew J. Germino, Jeanne C. Chambers, Cynthia S. Brown
2016, Book chapter, Exotic brome-grasses in arid and semiarid ecosystems of the western US
The spread and impacts of exotic species are unambiguous, global threats to many ecosystems. A prominent example is the suite of annual grasses in the Bromus genus (Bromus hereafter) that originate from Europe and Eurasia but have invaded or are invading large areas of the Western USA. This book...
Soil moisture and biogeochemical factors influence the distribution of annual Bromus species
Jayne Belnap, John Thomas Stark, Benjamin Rau, Edith B. Allen, Susan L. Phillips
2016, Book chapter, Exotic brome-grasses in arid and semiarid ecosystems of the western US
Abiotic factors have a strong influence on where annual Bromus species are found. At the large regional scale, temperature and precipitation extremes determine the boundaries of Bromus occurrence. At the more local scale, soil characteristics and climate influence distribution, cover, and performance. In hot, dry, summer-rainfall-dominated...