A simple web-based tool to compare freshwater fish data collected using AFS standard methods
Scott A. Bonar, Norman Mercado-Silva, Matt Rahr, Yuta T. Torrey, Averill Cate Jr.
2016, Fisheries (40) 580-589
The American Fisheries Society (AFS) recently published Standard Methods for Sampling North American Freshwater Fishes. Enlisting the expertise of 284 scientists from 107 organizations throughout Canada, Mexico, and the United States, this text was developed to facilitate comparisons of fish data across regions or time. Here we describe a user-friendly web tool...
Detection rates of geckos in visual surveys: Turning confounding variables into useful knowledge
Bjorn Lardner, Gordon H. Rodda, Amy A. Yackel Adams, Julie A. Savidge, Robert N. Reed
2016, Journal of Herpetology (49) 522-532
Transect surveys without some means of estimating detection probabilities generate population size indices prone to bias because survey conditions differ in time and space. Knowing what causes such bias can help guide the collection of relevant survey covariates, correct the survey data, anticipate situations where bias might be unacceptably large,...
Spawning and rearing behavior of bull trout in a headwater lake ecosystem
Lora B. Tennant, Robert E. Gresswell, Christopher S. Guy, Michael H. Meeuwig
2016, Environmental Biology of Fishes (99) 117-131
Numerous life histories have been documented for bull trout Salvelinus confluentus. Lacustrine-adfluvial bull trout populations that occupy small, headwater lake ecosystems and migrate short distances to natal tributaries to spawn are likely common; however, much of the research on potamodromous bull trout has focused on describing the spawning and...
Restored agricultural wetlands in Central Iowa: habitat quality and amphibian response
Rebecca A. Reeves, Clay Pierce, Kelly L. Smalling, Robert W. Klaver, Mark W. Vandever, William A. Battaglin, Erin L. Muths
2016, Wetlands (36) 101-110
Amphibians are declining throughout the United States and worldwide due, partly, to habitat loss. Conservation practices on the landscape restore wetlands to denitrify tile drainage effluent and restore ecosystem services. Understanding how water quality, hydroperiod, predation, and disease affect amphibians in restored wetlands is central to maintaining healthy amphibian populations...
Heterodon nasicus (plains hog-nosed snake) diet
Amy A. Yackel Adams, Daniel J. Martin, Rod D. Adams
2016, Herpetological Review (46) 645
No abstract available....
Groundwater science relevant to the Great Lakes Water Quality Agreement: A status report
Norman G. Grannemann, Dale Van Stempvoort, editor(s)
2016, Report
When the Great Lakes Water Quality Agreement (GLWQA) was signed in 1972 by the Governments of Canada and the United States (the “Parties”) (Environment Canada, 2013a), groundwater was not recognized as important to the water quality of the Lakes. At that time, groundwater and surface water were still considered as...
Non-native and native organisms moving into high elevation and high latitude ecosystems in an era of climate change: new challenges for ecology and conservation
Anibal Pauchard, Ann Albihn, Jake Alexander, Treena Burgess, Curt Daehler, Franz Essl, Birgitta Evengard, Greg Greenwood, Sylvia Haider, Jonathan Lenoir, K. McDougall, Ann Milbau, Erin L. Muths, Martin Nunez, Lois Pellissier, Wolfgang Rabitsch, Lisa Rew, Mark Robertson, Nathan Sanders, Christoph Kueffer
2016, Biological Invasions (18) 345-353
Cold environments at high elevation and high latitude are often viewed as resistant to biological invasions. However, climate warming, land use change and associated increased connectivity all increase the risk of biological invasions in these environments. Here we present a summary of the key discussions of the workshop ‘Biosecurity in...
Unusually large tsunamis frequent a currently creeping part of the Aleutian megathrust
Robert C. Witter, G. A. Carver, Richard W. Briggs, Guy R. Gelfenbaum, R.D. Koehler, SeanPaul M. La Selle, Adrian M. Bender, S.E. Engelhart, E. Hemphill-Haley, Troy D. Hill
2016, Geophysical Research Letters (43) 76-84
Current models used to assess earthquake and tsunami hazards are inadequate where creep dominates a subduction megathrust. Here we report geological evidence for large tsunamis, occurring on average every 300–340 years, near the source areas of the 1946 and 1957 Aleutian tsunamis. These areas bookend a postulated seismic gap over...
Characterization of the putatively introduced red alga Acrochaetium secundatum (Acrochaetiales, Rhodophyta) growing epizoically on the pelage of southern sea otters (Enhydra lutris nereis)
Gena B. Bentall, Barry H. Rosen, Jessica M. Kunz, Melissa A. Miller, Gary W. Saunders, Nicole L. LaRoche
2016, Marine Mammal Science (32) 753-764
Ecological associations between epibionts (organisms that live on the surface of another living organism) and vertebrates have been documented in both marine and terrestrial environments, and may be opportunistic, commensal, or symbiotic (Lewin et al. 1981, Holmes 1985, Allen et al. 1993, Bledsoe et al. 2006, Pfaller et al. 2008,...
Deferrisoma paleochoriense sp. nov., a thermophilic, iron(III)-reducing bacterium from a shallow-water hydrothermal vent in the Mediterranean Sea
Ileana M. Perez-Rodriguez, Matthew Rawls, D. Katharine Coykendall, Dionysis I. Foustoukos
2016, International Journal of Systematic and Evolutionary Microbiology (66) 830-836
A novel thermophilic, anaerobic, mixotrophic bacterium, designated strain MAG-PB1T, was isolated from a shallow-water hydrothermal vent system in Palaeochori Bay off the coast of the island of Milos, Greece. The cells were Gram-negative, rugose, short rods, approximately 1.0 μm long and 0.5 μm wide. Strain MAG-PB1T grew at 30–70 °C...
Growth-climate relationships across topographic gradients in the northern Great Lakes
S.F. Dymond, A.W. D’Amato, R.K. Kolka, P.V. Bolstad, S.D. Sebestyen, John B. Bradford
2016, Ecohydrology (9) 918-929
Climatic conditions exert important control over the growth, productivity, and distribution of forests, and characterizing these relationships is essential for understanding how forest ecosystems will respond to climate change. We used dendrochronological methods to develop climate–growth relationships for two dominant species, Populus tremuloides (quaking aspen) and Pinus resinosa (red pine), in the upper Great...
A framework to assess biogeochemical response to ecosystem disturbance using nutrient partitioning ratios
J. Marty Kranabetter, Kendra K. McLauchlan, Sara K. Enders, Jennifer M. Fraterrigo, Philip E. Higuera, Jesse L. Morris, Edward B. Rastetter, Rebecca Barnes, Brian Buma, Daniel G. Gavin, Laci M. Gerhart, Lindsey Gillson, Peter Hietz, Michelle C. Mack, Brenden McNeil, Steven S. Perakis
2016, Ecosystems (19) 387-395
Disturbances affect almost all terrestrial ecosystems, but it has been difficult to identify general principles regarding these influences. To improve our understanding of the long-term consequences of disturbance on terrestrial ecosystems, we present a conceptual framework that analyzes disturbances by their biogeochemical impacts. We posit that the ratio of soil...
Phylogenetic relationships of Iranian infectious hematopoietic necrosis virus of rainbow trout (Oncorhynchus mykiss) based on the glycoprotein gene
Milad Adel, Alireza Babaalian Amiri, Maryam Dada, Gael Kurath, Bahram Laktarashi, Amrolah Ghajari, Rachel Breyta
2016, Archives of Virology (161) 657-663
Infectious hematopoietic necrosis virus (IHNV), a member of family Rhabdoviridae and genus Novirhabdoviridae, causes a highly lethal disease of salmon and trout. In Iran IHNV was first detected in 2001 on farms rearing rainbow trout (Oncorhynchus mykiss). To evaluate the genetic relationships of IHNV from northern and western Iran, the...
Effect of stocking sub-yearling Atlantic salmon on the habitat use of sub-yearling rainbow trout
James H. Johnson
2016, Journal of Great Lakes Research (42) 116-126
Atlantic salmon (Salmo salar) restoration in the Lake Ontario watershed may depend on the species' ability to compete with naturalized non-native salmonids, including rainbow trout (Oncorhynchus mykiss) in Lake Ontario tributaries. This study examined interspecific habitat associations between sub-yearling Atlantic salmon and rainbow trout as well as the effect of...
Complex mixtures, complex responses: Assessing pharmaceutical mixtures using field and laboratory approaches
Heiko L. Schoenfuss, Edward T. Furlong, Patrick J. Phillips, Tia-Marie Scott, Dana W. Kolpin, Marina Cetkovic-Cvrlje, Kelsey E. Lesteberg, Daniel C. Rearick
2016, Environmental Toxicology and Chemistry (35) 953-965
Pharmaceuticals are present in low concentrations (<100 ng/L) in most municipal wastewater effluents but may be elevated locally because of factors such as input from pharmaceutical formulation facilities. Using existing concentration data, the authors assessed pharmaceuticals in laboratory exposures of fathead minnows (Pimephales promelas) and added environmental complexity through effluent exposures....
Effect of antecedent-hydrological conditions on rainfall triggering of debris flows in ash-fall pyroclastic mantled slopes of Campania (southern Italy)
E. Napolitano, F Fusco, Rex L. Baum, Jonathan W. Godt, P. De Vita
2016, Landslides (13) 967-983
Mountainous areas surrounding the Campanian Plain and the Somma-Vesuvius volcano (southern Italy) are among the most risky areas of Italy due to the repeated occurrence of rainfallinduced debris flows along ash-fall pyroclastic soil-mantled slopes. In this geomorphological framework, rainfall patterns, hydrological processes taking place within multi-layered ash-fall pyroclastic deposits and...
Effect of permafrost thaw on the dynamics of lakes recharged by ice-jam floods: case study in Yukon Flats, Alaska
Steve M. Jepsen, Michelle Ann Walvoord, Clifford I. Voss, Jennifer R. Rover
2016, Hydrological Processes (30) 1782-1795
Large river floods are a key water source for many lakes in fluvial periglacial settings. Where permeable sediments occur, the distribution of permafrost may play an important role in the routing of floodwaters across a floodplain. This relationship is explored for lakes in the discontinuous permafrost of Yukon Flats, interior...
Principles underlying the epizootiology of viral hemorrhagic septicemia in Pacific herring and other fishes throughout the North Pacific Ocean
Paul K. Hershberger, Kyle A. Garver, James R. Winton
2016, Canadian Journal of Fisheries and Aquatic Sciences (73) 853-859
Although viral hemorrhagic septicemia virus (VHSV) typically occurs at low prevalence and intensity in natural populations of Pacific herring (Clupea pallasii) and other marine fishes in the Northeast Pacific Ocean, epizootics of the resulting disease (VHS) periodically occur, often in association with observed fish kills. Here we identify a list...
Water availability and land subsidence in the Central Valley, California, USA
Claudia C. Faunt, Michelle Sneed, Jonathan A. Traum, Justin T. Brandt
2016, Hydrogeology Journal (24) 675-684
The Central Valley in California (USA) covers about 52,000 km2 and is one of the most productive agricultural regions in the world. This agriculture relies heavily on surface-water diversions and groundwater pumpage to meet irrigation water demand. Because the valley is semi-arid and surface-water availability varies substantially, agriculture relies heavily on local...
The conservation genetics juggling act: Integrating genetics and ecology, science and policy
Susan M. Haig, Mark P. Miller, Renee Bellinger, Hope M. Draheim, Dacey Mercer, Thomas D. Mullins
2016, Evolutionary Applications (9) 181-195
The field of conservation genetics, when properly implemented, is a constant juggling act integrating molecular genetics, ecology, and demography with applied aspects concerning managing declining species or implementing conservation laws and policies. This young field has grown substantially since the 1980’s following development of the polymerase chain reaction and now...
Averaged 30 year climate change projections mask opportunities for species establishment
Josep M. Serra-Diaz, Janet Franklin, Lynn C. Sweet, Ian M. McCullough, Alexandra D. Syphard, Helen M. Regan, Lorraine E. Flint, Alan L. Flint, John Dingman, Max A. Moritz, Kelly T. Redmond, Lee Hannah, Frank W. Davis
2016, Ecography (39) 844-845
No abstract available....
Drifting to oblivion? Rapid genetic differentiation in an endangered lizard following habitat fragmentation and drought
Amy G. Vandergast, Dustin A. Wood, Andrew R. Thompson, Mark Fisher, Cameron W. Barrows, Tyler J. Grant
2016, Diversity and Distributions (22) 344-357
Aim The frequency and severity of habitat alterations and disturbance are predicted to increase in upcoming decades, and understanding how disturbance affects population integrity is paramount for adaptive management. Although rarely is population genetic sampling conducted at multiple time points, pre- and post-disturbance comparisons may provide one of...
Moisture and temperature controls on nitrification differ among ammonia oxidizer communities from three alpine soil habitats
Brooke B. Osborne, Jill Baron, Matthew D. Wallenstein
2016, Frontiers of Earth Science (10) 1-12
Climate change is altering the timing and magnitude of biogeochemical fluxes in many high elevation ecosystems. The consequent changes in alpine nitrification rates have the potential to influence ecosystem scale responses. In order to better understand how changing temperature and moisture conditions may influence ammonia oxidizers and nitrification activity, we...
Application of a fluidized bed reactor charged with aragonite for control of alkalinity, pH and carbon dioxide in marine recirculating aquaculture systems
Paul S Wills, Timothy Pfeiffer, Richard Baptiste, Barnaby J. Watten
2016, Aquacultural Engineering (70) 81-85
Control of alkalinity, dissolved carbon dioxide (dCO2), and pH are critical in marine recirculating aquaculture systems (RAS) in order to maintain health and maximize growth. A small-scale prototype aragonite sand filled fluidized bed reactor was tested under varying conditions of alkalinity and dCO2 to develop and model the response of dCO2 across...
Egg laying sequence influences egg mercury concentrations and egg size in three bird species: Implications for contaminant monitoring programs
Joshua T. Ackerman, Collin A. Eagles-Smith, Mark P. Herzog, Julie L. Yee, C. Alex Hartman
2016, Environmental Toxicology and Chemistry (35) 1458-1469
Bird eggs are commonly used in contaminant monitoring programs and toxicological risk assessments, but intra-clutch variation and sampling methodology could influence interpretability. We examined the influence of egg laying sequence on egg mercury concentrations and burdens in American avocets, black-necked stilts, and Forster's terns. The average decline in mercury concentrations...