Advancing the science of microbial symbiosis to support invasive species management: a case study on Phragmites in the Great Lakes
Kurt P. Kowalski, Charles W. Bacon, Wesley A. Bickford, Heather A. Braun, Keith Clay, Michele Leduc-Lapierre, Elizabeth Lillard, Melissa K. McCormick, Eric Nelson, Monica Torres, James W. C. White, Douglas A. Wilcox
2015, Frontiers in Microbiology (6)
A growing body of literature supports microbial symbiosis as a foundational principle for the competitive success of invasive plant species. Further exploration of the relationships between invasive species and their associated microbiomes, as well as the interactions with the microbiomes of native species, can lead to key new insights into...
Mineral Resource of the Month: Antimony
David E. Guberman
2015, Earth Magazine (February 2015)
Antimony is a lustrous silvery-white semimetal or metalloid. Archaeological and historical studies indicate that antimony and its mineral sulfides have been used by humans for at least six millennia. The alchemist Basil Valentine is sometimes credited with “discovering” the element; he described the extraction of metallic antimony from stibnite in...
Variations in community exposure to lahar hazards from multiple volcanoes in Washington State (USA)
Angela K. Diefenbach, Nathan J. Wood, John W. Ewert
2015, Journal of Applied Volcanology (4)
Understanding how communities are vulnerable to lahar hazards provides critical input for effective design and implementation of volcano hazard preparedness and mitigation strategies. Past vulnerability assessments have focused largely on hazards posed by a single volcano, even though communities and officials in many parts of the world must plan for...
Differences between main-channel and off-channel food webs in the upper Mississippi River revealed by fatty acid profiles of consumers
James H. Larson, Michelle Bartsch, Steve Gutreuter, Brent C. Knights, Lynn Bartsch, William B. Richardson, Jonathan M. Vallazza, Michael T. Arts
2015, Inland Waters (5) 101-106
Large river systems are often thought to contain a mosaic of patches with different habitat characteristics driven by differences in flow and mixing environments. Off-channel habitats (e.g., backwater areas, secondary channels) can become semi-isolated from main-channel water inputs, leading to the development of distinct biogeochemical environments. Observations of adult bluegill...
Ground motion observations of the 2014 South Napa earthquake
Annemarie S. Baltay Sundstrom, John Boatwright
2015, Seismological Research Letters (86) 355-360
Ground motions of the South Napa earthquake (24 August 2014; M 6.0) were recorded at 19 stations within 20 km and 292 stations within 100 km of the rupture surface trace, generating peak ground motions in excess of 50%g and 50 cm/s in and near Napa Valley. This large dataset allows us to compare the...
Genomics and introgression: Discovery and mapping of thousands of species-diagnostic SNPs using RAD sequencing
Brian K. Hand, Tyler D Hether, Ryan P. Kovach, Clint C. Muhlfeld, Stephen J. Amish, Matthew C. Boyer, Sean M. O’Rourke, Michael R. Miller, Winsor H. Lowe, Paul A. Hohenlohe, Gordon Luikart
2015, Current Zoology (61) 146-154
Invasive hybridization and introgression pose a serious threat to the persistence of many native species. Understanding the effects of hybridization on native populations (e.g., fitness consequences) requires numerous species-diagnostic loci distributed genome-wide. Here we used RAD sequencing to discover thousands of single-nucleotide polymorphisms (SNPs) that are diagnostic between rainbow trout...
Vegetation burn severity mapping using Landsat-8 and WorldView-2
Zhuoting Wu, Barry R. Middleton, Robert Hetzler, John M. Vogel, Dennis G. Dye
2015, Photogrammetric Engineering and Remote Sensing (2) 143-154
We used remotely sensed data from the Landsat-8 and WorldView-2 satellites to estimate vegetation burn severity of the Creek Fire on the San Carlos Apache Reservation, where wildfire occurrences affect the Tribe's crucial livestock and logging industries. Accurate pre- and post-fire canopy maps at high (0.5-meter) resolution were created from...
Vegetation and non-native ungulate monitoring at the Big Island National Wildlife Refuge Complex 2010–2014.
Steven C. Hess, Christina R. Leopold, Steven J. Kendall
2015, Technical Report HCSU-062
The Hakalau Forest Unit (HFU) of Big Island National Wildlife Refuge Complex (BINWRC) has intensively managed feral cattle (Bos taurus) and pigs (Sus scrofa) and monitored non-native ungulate presence and distribution during surveys of all managed areas since 1988. We: 1) provide results from recent ungulate surveys at HFU to...
Time scales of porphyry Cu deposit formation: insights from titanium diffusion in quartz
Celestine N. Mercer, Mark H. Reed, Cameron M. Mercer
2015, Economic Geology (110) 587-602
Porphyry dikes and hydrothermal veins from the porphyry Cu-Mo deposit at Butte, Montana, contain multiple generations of quartz that are distinct in scanning electron microscope-cathodoluminescence (SEM-CL) images and in Ti concentrations. A comparison of microprobe trace element profiles and maps to SEM-CL images shows that the concentration of Ti in...
Temperature effects induced by climate change on the growth and consumption by salmonines in Lakes Michigan and Huron
Yu-Chun Kao, Charles P. Madenjian, David B. Bunnell, Brent M. Lofgren, Marjorie Perroud
2015, Environmental Biology of Fishes (98) 1089-1104
We used bioenergetics models to investigate temperature effects induced by climate change on the growth and consumption by Chinook salmon Oncorhynchus tshawytscha, lake trout Salvelinus namaycush, and steelhead O. mykiss in Lakes Michigan and Huron. We updated biological inputs to account for recent changes in the food webs and used temperature inputs in response...
Flow cytometric method for measuring chromatin fragmentation in fixed sperm from yellow perch (Perca flavescens)
Jill A. Jenkins, Rassa O. Draugelis-Dale, Alfred E. Pinkney, Luke R. Iwanowicz, Vicki Blazer
2015, Theriogenology (83) 920-931
Declining harvests of yellow perch, Perca flavescens, in urbanized watersheds of Chesapeake Bay have prompted investigations of their reproductive fitness. The purpose of this study was to establish a flow cytometric technique for DNA analysis of fixed samples sent from the field to provide reliable gamete quality measurements. Similar to the...
Microscopical characterization of carbon materials derived from coal and petroleum and their interaction phenomena in making steel electrodes, anodes and cathode blocks for the Microscopy of Carbon Materials Working Group of the ICCP
G. Predeanu, C. Panaitescu, M. Bălănescu, G. Bieg, A.G. Borrego, M. A. Diez, Paul C. Hackley, B. Kwiecinska, M. Marques, Maria Mastalerz, M. Misz-Kennan, S. Pusz, I. Suarez-Ruiz, S. Rodrigues, A. K. Singh, A. K. Varma, A. Zdravkov, D. Zivotić
2015, International Journal of Coal Geology (139) 63-79
This paper describes the evaluation of petrographic textures representing the structural organization of the organic matter derived from coal and petroleum and their interaction phenomena in the making of steel electrodes, anodes and cathode blocks.This work represents the results of the Microscopy of Carbon Materials Working Group in...
The aging of America's reservoirs: In-reservoir and downstream physical changes and habitat implications
Kyle E. Juracek
2015, Journal of the American Water Resources Association (51) 168-184
Reservoirs are important for various purposes including flood control, water supply, power generation, and recreation. The aging of America's reservoirs and progressive loss of water storage capacity resulting from ongoing sedimentation, coupled with increasing societal needs, will cause the social, economic, environmental, and political importance of reservoirs to continually increase....
Aquatic invertebrate food base for waterbirds at Wetland Reserve Program easements in the lower Mississippi Alluvial Valley
Jessica L. Tapp, Elisabeth B. Webb
2015, Wetlands (35) 183-192
Migratory waterbirds depend on invertebrates as a key source of dietary protein, but few studies have quantified aquatic invertebrates or their response to management on privately owned wetlands. Our objectives were to quantify the effects of wetland management provided through the Migratory Bird Habitat Initiative (MBHI) on invertebrate biomass, family...
Genetic diversity and host specificity varies across three genera of blood parasites in ducks of the Pacific Americas Flyway
Andrew B. Reeves, Matthew M. Smith, Brandt W. Meixell, Joseph P. Fleskes, Andrew M. Ramey
2015, PLoS ONE (10)
Birds of the order Anseriformes, commonly referred to as waterfowl, are frequently infected by Haemosporidia of the genera Haemoproteus, Plasmodium, and Leucocytozoon via dipteran vectors. We analyzed nucleotide sequences of the Cytochrome b (Cytb) gene from parasites of these genera detected in six species of ducks from Alaska and California,...
Inter-annual and spatial variability of Hamon potential evapotranspiration model coefficients
Gregory J. McCabe, Lauren E. Hay, Andy Bock, Steven L. Markstrom, R. Dwight Atkinson
2015, Journal of Hydrology (521) 389-394
Monthly calibrated values of the Hamon PET coefficient (C) are determined for 109,951 hydrologic response units (HRUs) across the conterminous United States (U.S.). The calibrated coefficient values are determined by matching calculated mean monthly Hamon PET to mean monthly free-water surface evaporation. For most locations and months the calibrated coefficients...
Preliminary evaluation of an in vivo fluorometer to quantify algal periphyton biomass and community composition
Theodore D. Harris, Jennifer L. Graham
2015, Lake and Reservoir Management (31) 127-133
The bbe-Moldaenke BenthoTorch (BT) is an in vivo fluorometer designed to quantify algal biomass and community composition in benthic environments. The BT quantifies total algal biomass via chlorophyll a (Chl-a) concentration and may differentiate among cyanobacteria, green algae, and diatoms based on pigment fluorescence. To evaluate how BT measurements of...
Do shrubs reduce the adverse effects of grazing on soil properties?
David J. Eldridge, Genevieve Beecham, James B. Grace
2015, Ecohydrology (8) 1503-1513
Increases in the density of woody plants are a global phenomenon in drylands, and large aggregations of shrubs, in particular, are regarded as being indicative of dysfunctional ecosystems. There is increasing evidence that overgrazing by livestock reduces ecosystem functions in shrublands, but that shrubs may buffer the negative effects of...
A method for estimating the diffuse attenuation coefficient (KdPAR)from paired temperature sensors
Jordan S. Read, Kevin C. Rose, Luke A. Winslow, Emily K. Read
2015, Limnology and Oceanography: Methods (13) 53-61
A new method for estimating the diffuse attenuation coefficient for photosynthetically active radiation (KdPAR) from paired temperature sensors was derived. We show that during cases where the attenuation of penetrating shortwave solar radiation is the dominant source of temperature changes, time series measurements of water temperatures at multiple depths (z1 and z2)...
Aeolian responses to climate variability during the past century on Mesquite Lake Playa, Mojave Desert
John W. Whitney, George N. Breit, S.E. Buckingham, Richard L. Reynolds, Rian C. Bogle, Lifeng Luo, Harland L. Goldstein, John M. Vogel
2015, Geomorphology (230) 13-25
The erosion and deposition of sediments by wind from 1901 to 2013 have created large changes in surface features of Mesquite Lake playa in the Mojave Desert. The decadal scale recurrence of sand-sheet development, migration, and merging with older dunes appears related to decadal climatic changes of drought and wetness...
Anomalous solute transport in saturated porous media: Relating transport model parameters to electrical and nuclear magnetic resonance properties
Ryan D Swanson, Andrew Binley, Kristina Keating, Samantha France, Gordon Osterman, Frederick D. Day-Lewis, Kamini Singha
2015, Water Resources Research (51) 1264-1283
The advection-dispersion equation (ADE) fails to describe commonly observed non-Fickian solute transport in saturated porous media, necessitating the use of other models such as the dual-domain mass-transfer (DDMT) model. DDMT model parameters are commonly calibrated via curve fitting, providing little insight into the relation between effective parameters and physical properties...
Sources of fine sediment stored in agricultural lowland streams, Midwest, USA
Jasmeet Lamba, Anita M. Thompson, K.G. Karthikeyan, Faith A. Fitzpatrick
2015, Geomorphology (236) 44-53
Agricultural activities can accelerate the offsite transport of productive soil from fields leading to stream water quality degradation. Identification of the nature and relative contribution of different sources to fine-grained sediment (e.g., silts, clays) in streams is important to effectively focus agricultural best management...
Hillslope run-off thresholds with shrink–swell clay soils
Ryan D. Stewart, Majdi R. Abou Najm, David E. Rupp, John W. Lane Jr., Hamil C. Uribe, Jose Luis Arumi, John S. Selker
2015, Hydrological Processes (29) 557-571
Irrigation experiments on 12 instrumented field plots were used to assess the impact of dynamic soil crack networks on infiltration and run-off. During applications of intensity similar to a heavy rainstorm, water was seen being preferentially delivered within the soil profile. However, run-off was not observed until soil water content...
Development of a new semi-analytical model for cross-borehole flow experiments in fractured media
Delphine Roubinet, James Irving, Frederick D. Day-Lewis
2015, Advances in Water Resources (76) 97-108
Analysis of borehole flow logs is a valuable technique for identifying the presence of fractures in the subsurface and estimating properties such as fracture connectivity, transmissivity and storativity. However, such estimation requires the development of analytical and/or numerical modeling tools that are well adapted to the complexity of the problem....
Petrologic testament to changes in shallow magma storage and transport during 30+ years of recharge and eruption at Kīlauea Volcano, Hawai‘i
Carl R. Thornber, Tim R. Orr, Christina Heliker, Richard P. Hoblitt
Rebecca Carey, Valerie Cayol, Michael P. Poland, Dominique Weis, editor(s)
2015, Geophysical Monograph 8
Petrologic monitoring of Kīlauea Volcano from January 1983 to October 2013 has yielded an extensive record of glass, phenocryst, melt inclusion, and bulk-lava chemistry from well-quenched lava. When correlated with 30+ years of geophysical and geologic monitoring, petrologic details testify to physical maturation of summit-to-rift magma plumbing associated with...
