Parallelization of a hydrological model using the message passing interface
Yiping Wu, Tiejian Li, Liqun Sun, Ji Chen
2013, Environmental Modelling and Software (43) 124-132
With the increasing knowledge about the natural processes, hydrological models such as the Soil and Water Assessment Tool (SWAT) are becoming larger and more complex with increasing computation time. Additionally, other procedures such as model calibration, which may require thousands of model iterations, can increase running time and thus further...
Investigating the effects of point source and nonpoint source pollution on the water quality of the East River (Dongjiang) in South China
Yiping Wu, Ji Chen
2013, Ecological Indicators (32) 294-304
Understanding the physical processes of point source (PS) and nonpoint source (NPS) pollution is critical to evaluate river water quality and identify major pollutant sources in a watershed. In this study, we used the physically-based hydrological/water quality model, Soil and Water Assessment Tool, to investigate the influence of PS and...
Analyzing the water budget and hydrological characteristics and responses to land use in a monsoonal climate river basin in South China
Yiping Wu, Ji Chen
2013, Environmental Management (51) 1174-1186
Hydrological models have been increasingly used by hydrologists and water resource managers to understand natural processes and human activities that affect watersheds. In this study, we use the physically based model, Soil and Water Assessment Tool (SWAT), to investigate the hydrological processes in the East River Basin in South China,...
Continuous real-time water-quality monitoring and regression analysis to compute constituent concentrations and loads in the North Fork Ninnescah River upstream from Cheney Reservoir, south-central Kansas, 1999–2012
Mandy L. Stone, Jennifer L. Graham, Jackline W. Gatotho
2013, Scientific Investigations Report 2013-5071
Cheney Reservoir, located in south-central Kansas, is the primary water supply for the city of Wichita. The U.S. Geological Survey has operated a continuous real-time water-quality monitoring station since 1998 on the North Fork Ninnescah River, the main source of inflow to Cheney Reservoir. Continuously measured water-quality physical properties include...
Water-quality, bed-sediment, and biological data (October 2010 through September 2011) and statistical summaries of data for streams in the Clark Fork basin, Montana
Kent A. Dodge, Michelle I. Hornberger, Jessica Dyke
2013, Open-File Report 2013-1017
Water, bed sediment, and biota were sampled in streams from Butte to near Missoula, Montana, as part of a monitoring program in the upper Clark Fork basin of western Montana; additional water samples were collected from near Galen to near Missoula at select sites as part of a supplemental sampling...
Reconciling resource utilization and resource selection functions
Mevin Hooten, Ephraim M. Hanks, Devin S. Johnson, Mat W. Alldredge
2013, Journal of Animal Ecology (52) 1146-1154
Summary: 1. Analyses based on utilization distributions (UDs) have been ubiquitous in animal space use studies, largely because they are computationally straightforward and relatively easy to employ. Conventional applications of resource utilization functions (RUFs) suggest that estimates of UDs can be used as response variables in a regression involving spatial...
Microhabitat use of the diamond darter
Stuart A. Welsh, Dustin M. Smith, Nate D. Taylor
2013, Ecology of Freshwater Fish (22) 587-595
The only known extant population of the diamond darter (Crystallaria cincotta) exists in the lower 37 km of Elk River, WV, USA. Our understanding of diamond darter habitat use was previously limited, because few individuals have been observed during sampling with conventional gears. We quantified microhabitat use of diamond darters based...
Effects of food availability on yolk androgen deposition in the black-legged kittiwake (Rissa tridactyla), a seabird with facultative brood reduction
Z.M. Benowitz-Fredericks, Alexander S. Kitaysky, Jorg Welcker, Scott A. Hatch
2013, PLoS ONE (8)
In birds with facultative brood reduction, survival of the junior chick is thought to be regulated primarily by food availability. In black-legged kittiwakes (Rissa tridactyla) where parents and chicks are provided with unlimited access to supplemental food during the breeding season, brood reduction still occurs and varies interannually. Survival of...
Local-area-enhanced, 2.5-meter resolution natural-color and color-infrared satellite-image mosaics of the Herat mineral district in Afghanistan: Chapter T in Local-area-enhanced, high-resolution natural-color and color-infrared satellite-image mosaics of mineral districts in Afghanistan
Philip A. Davis, Scott A. Arko, Michelle L. Harbin
2013, Data Series 709-T
The U.S. Geological Survey (USGS), in cooperation with the U.S. Department of Defense Task Force for Business and Stability Operations, prepared databases for mineral-resource target areas in Afghanistan. The purpose of the databases is to (1) provide useful data to ground-survey crews for use in performing detailed assessments of the...
Mercury and water-quality data from Rink Creek, Salmon River, and Good River, Glacier Bay National Park and Preserve, Alaska, November 2009-October 2011
Sonia A. Nagorski, Edward G. Neal, Timothy P. Brabets
2013, Open-File Report 2013-1097
Glacier Bay National Park and Preserve (GBNPP), Alaska, like many pristine high latitude areas, is exposed to atmospherically deposited contaminants such as mercury (Hg). Although the harmful effects of Hg are well established, information on this contaminant in southeast Alaska is scarce. Here, we assess the level of this contaminant...
Salamander colonization of Chase Lake, Stutsman County, North Dakota
David M. Mushet, Kyle I. McLean, Craig A. Stockwell
2013, The Prairie Naturalist (45) 106-108
Salt concentrations in lakes are dynamic. In the western United States, water diversions have caused significant declines in lake levels resulting in increased salinity, placing many aquatic species at risk (Galat and Robinson 1983, Beutel et al. 2001). Severe droughts can have similar effects on salt concentrations and aquatic communities...
Floral ecology and insect visitation in riparian Tamarix sp. (saltcedar)
D.C. Andersen, S. M. Nelson
2013, Journal of Arid Environments (94) 1-5-112
Climate change projections for semiarid and arid North America include reductions in stream discharge that could adversely affect riparian plant species dependent on stream-derived ground water. In order to better understand this potential impact, we used a space-for-time substitution to test the hypotheses that increasing depth-to-groundwater (DGW) is inversely related...
Plankton communities and summertime declines in algal abundance associated with low dissolved oxygen in the Tualatin River, Oregon
Kurt D. Carpenter, Stewart A. Rounds
2013, Scientific Investigations Report 2013-5037
Phytoplankton populations in the Tualatin River in northwestern Oregon are an important component of the dissolved oxygen (DO) budget of the river and are critical for maintaining DO levels in summer. During the low-flow summer period, sufficient nutrients and a long residence time typically combine with ample sunshine and warm...
Classifications for Coastal Wetlands Planning, Protection and Restoration Act (CWPPRA) site-specific projects: 2010
William R. Jones, Adrienne Garber
2013, Data Series 745
The Coastal Wetlands Planning, Protection and Restoration Act (CWPPRA) funds over 100 wetland restoration projects across Louisiana. Integral to the success of CWPPRA is its long-term monitoring program, which enables State and Federal agencies to determine the effectiveness of each restoration effort. One component of this monitoring program is the...
Use of general purpose graphics processing units with MODFLOW
Joseph D. Hughes, Jeremy T. White
2013, Ground Water
To evaluate the use of general-purpose graphics processing units (GPGPUs) to improve the performance of MODFLOW, an unstructured preconditioned conjugate gradient (UPCG) solver has been developed. The UPCG solver uses a compressed sparse row storage scheme and includes Jacobi, zero fill-in incomplete, and modified-incomplete lower-upper (LU) factorization, and generalized least-squares...
MODFLOW–USG version 1: An unstructured grid version of MODFLOW for simulating groundwater flow and tightly coupled processes using a control volume finite-difference formulation
Sorab Panday, Christian D. Langevin, Richard G. Niswonger, Motomu Ibaraki, Joseph D. Hughes
2013, Techniques and Methods 6-A45
A new version of MODFLOW, called MODFLOW–USG (for UnStructured Grid), was developed to support a wide variety of structured and unstructured grid types, including nested grids and grids based on prismatic triangles, rectangles, hexagons, and other cell shapes. Flexibility in grid design can be used to focus resolution along rivers...
Benthic substrate classification map: Gulf Islands National Seashore
Dawn Lavoie, James Flocks, Dave Twichell, Kate Rose
2013, Open-File Report 2012-1051
The 2005 hurricane season was devastating for the Mississippi Gulf Coast. Hurricane Katrina caused significant degradation of the barrier islands that compose the Gulf Islands National Seashore (GUIS). Because of the ability of coastal barrier islands to help mitigate hurricane damage to the mainland, restoring these habitats prior to the...
Groundwater conditions in Georgia, 2010–2011
Michael F. Peck, Debbie W. Gordon, Jaime A. Painter
2013, Scientific Investigations Report 2013-5084
The U.S. Geological Survey collects groundwater data and conducts studies to monitor hydrologic conditions, better define groundwater resources, and address problems related to water supply, water use, and water quality. In Georgia, water levels were monitored continuously at 186 wells during calendar year 2010 and at 181 wells during calendar...
Type specimens of Crotalus scutulatus (Chordata: Reptilia: Squamata: Viperidae) re-examined, with new evidence after more than a century of confusion
Michael D. Cardwell, Steve W. Gotte, Roy W. McDiarmid, Ned Gilmore, James A. Poindexter
2013, Proceedings of the Biological Society of Washington (126) 11-16
The original description of Crotalus scutulatus (Chordata: Reptilia: Squamata: Viperidae) was published in 1861 by Robert Kennicott, who did not identify a type specimen or a type locality. We review the history of specimens purported to be the type(s) and various designations of type locality. We provide evidence that ANSP...
A collaborative user-producer assessment of earthquake-response products
Joan Gomberg, Allen Jakobitz
2013, Open-File Report 2013-1103
The U.S. Geological Survey (USGS) and the Washington State Emergency Management Division assessed how well USGS earthquake-response products met the needs of emergency managers at county and local levels. Focus-group responses guided development of new products for testing in a regional-scale earthquake exercise. The assessment showed that (1) emergency responders...
Spatial capture-recapture models for jointly estimating population density and landscape connectivity
J. Andrew Royle, Richard B. Chandler, Kimberly D. Gazenski, Tabitha A. Graves
2013, Ecology (94) 287-294
Population size and landscape connectivity are key determinants of population viability, yet no methods exist for simultaneously estimating density and connectivity parameters. Recently developed spatial capture–recapture (SCR) models provide a framework for estimating density of animal populations but thus far have not been used to study connectivity. Rather, all applications...
Presence-only modeling using MAXENT: when can we trust the inferences?
Charles B. Yackulic, Richard Chandler, Elise F. Zipkin, J. Andrew Royle, James D. Nichols, Evan H. Campbell Grant, Sophie Veran
2013, Methods in Ecology and Evolution (4) 236-243
1. Recently, interest in species distribution modelling has increased following the development of new methods for the analysis of presence-only data and the deployment of these methods in user-friendly and powerful computer programs. However, reliable inference from these powerful tools requires that several assumptions be met, including the assumptions that...
Iron mineralogy and bioaccessibility of dust generated from soils as determined by reflectance spectroscopy and magnetic and chemical properties--Nellis Dunes recreational area, Nevada
Harland L. Goldstein, Richard L. Reynolds, Suzette A. Morman, Bruce Moskowitz, Raymond F. Kokaly, Dirk Goossens, Brenda J. Buck, Cody Flagg, Jessica Till, Kimberly Yauk, Thelma S. Berquo
2013, Scientific Investigations Report 2013-5054
Atmospheric mineral dust exerts many important effects on the Earth system, such as atmospheric temperatures, marine productivity, and melting of snow and ice. Mineral dust also can have detrimental effects on human health through respiration of very small particles and the leaching of metals in various organs. These effects can...
Extending airborne electromagnetic surveys for regional active layer and permafrost mapping with remote sensing and ancillary data, Yukon Flats ecoregion, central Alaska
Neal J. Pastick, M. Torre Jorgenson, Bruce K. Wylie, Burke J. Minsley, Lei Ji, Michelle Ann Walvoord, Bruce D. Smith, Jared D. Abraham, Joshua R. Rose
2013, Permafrost and Periglacial Processes (24) 184-199
Machine-learning regression tree models were used to extrapolate airborne electromagnetic resistivity data collected along flight lines in the Yukon Flats Ecoregion, central Alaska, for regional mapping of permafrost. This method of extrapolation (r = 0.86) used subsurface resistivity, Landsat Thematic Mapper (TM) at-sensor reflectance, thermal, TM-derived spectral indices, digital elevation models and...
Spatial consistency of chinook salmon redd distribution within and among years in the Cowlitz River, Washington
Katherine J.C. Klett, Christian E. Torgersen, Julie A. Henning, Christopher J. Murray
2013, North American Journal of Fisheries Management (33) 508-518
We investigated the spawning patterns of Chinook Salmon Oncorhynchus tshawytscha on the lower Cowlitz River, Washington, using a unique set of fine- and coarse-scale temporal and spatial data collected during biweekly aerial surveys conducted in 1991–2009 (500 m to 28 km resolution) and 2008–2009 (100–500 m resolution). Redd locations were...