A direct-gradient multivariate index of biotic condition
Leandro E. Miranda, J.N. Aycock, K. J. Killgore
2012, Transactions of the American Fisheries Society (141) 1637-1648
Multimetric indexes constructed by summing metric scores have been criticized despite many of their merits. A leading criticism is the potential for investigator bias involved in metric selection and scoring. Often there is a large number of competing metrics equally well correlated with environmental stressors, requiring a judgment call by...
Linear complementarity formulation for 3D frictional sliding problems
J. Ole Kaven, Stephen H. Hickman, Nicholas C. Davatzes, Ovunc Mutlu
2012, Computational Geosciences (16) 613-624
Frictional sliding on quasi-statically deforming faults and fractures can be modeled efficiently using a linear complementarity formulation. We review the formulation in two dimensions and expand the formulation to three-dimensional problems including problems of orthotropic friction. This formulation accurately reproduces analytical solutions to static Coulomb friction sliding problems. The formulation...
Guidelines for collecting and maintaining archives for genetic monitoring
Jennifer A. Jackson, Linda Laikre, C. Scott Baker, Katherine C. Kendall, The Genetic Monitoring Working Group
2012, Conservation Genetics Resources (4) 527-536
Rapid advances in molecular genetic techniques and the statistical analysis of genetic data have revolutionized the way that populations of animals, plants and microorganisms can be monitored. Genetic monitoring is the practice of using molecular genetic markers to track changes in the abundance, diversity or distribution of populations, species or...
Estimations of evapotranspiration and water balance with uncertainty over the Yukon River Basin
Wenping Yuan, Shuguang Liu, Shunlin Liang, Zhengxi Tan, Heping Liu, Claudia Young
2012, Water Resources Management (26) 2147-2157
In this study, the revised Remote Sensing-Penman Monteith model (RS-PM) was used to scale up evapotranspiration (ET) over the entire Yukon River Basin (YRB) from three eddy covariance (EC) towers covering major vegetation types. We determined model parameters and uncertainty using a Bayesian-based method in the three EC sites. The...
Correlation of clayey gouge in a surface exposure of the San Andreas fault with gouge at depth from SAFOD: Implications for the role of serpentinite in fault mechanics
Diane E. Moore, Michael J. Rymer
2012, Journal of Structural Geology (38) 51-60
Magnesium-rich clayey gouge similar to that comprising the two actively creeping strands of the San Andreas Fault in drill core from the San Andreas Fault Observatory at Depth (SAFOD) has been identified in a nearby outcrop of serpentinite within the fault zone at Nelson Creek. Each occurrence of the gouge...
Uplift history of the Sila Massif, southern Italy, deciphered from cosmogenic 10Be erosion rates and river longitudinal profile analysis
Valerio Olivetti, Andrew J. Cyr, Paola Molin, Claudio Faccenna, Darryl E. Granger
2012, Tectonics (31)
The Sila Massif in the Calabrian Arc (southern Italy) is a key site to study the response of a landscape to rock uplift. Here an uplift rate of ∼1 mm/yr has imparted a deep imprint on the Sila landscape recorded by a high-standing low-relief surface on top of the massif,...
Modeling radium distribution in coastal aquifers during sea level changes: The Dead Sea case
Yael Kiro, Yoseph Yechieli, Clifford I. Voss, Abraham Starinsky, Yishai Weinstein
2012, Geochimica et Cosmochimica Acta (88) 237-254
We present a new approach to studying the behavior of radium isotopes in a coastal aquifer. In order to simulate radium isotope distributions in the dynamic flow field of the Dead Sea aquifer, a multi-species density dependent flow model (SUTRA-MS) was used. Field data show that the activity of 226Ra...
Microbial transformations of arsenic: Mobilization from glauconitic sediments to water
Adam C. Mumford, Julia L. Barringer, William Benzel, Pamela A. Reilly, L.Y. Young
2012, Water Research (46) 2859-2868
In the Inner Coastal Plain of New Jersey, arsenic (As) is released from glauconitic sediment to carbon- and nutrient-rich shallow groundwater. This As-rich groundwater discharges to a major area stream. We hypothesize that microbes play an active role in the mobilization of As from glauconitic subsurface sediments into groundwater in...
Metals in sediments and fish from Sea Lots and Point Lisas harbors, Trinidad and Tobago
Azad Mohammed, Thomas May, Kathy Echols, Mike Walther, Anton Manoo, Dexter Maraj, John Agard, Carl Orazio
2012, Marine Pollution Bulletin (64) 169-173
Concentrations of heavy metals were determined in nearshore marine sediments and fish tissue from Sea Lots area on the west coast, at Caroni Lagoon National Park, and in the Point Lisas harbor, Trinidad. The most dominant metals found in sediments were Al, Fe and Zn...
Mercury and other element exposure in tree swallows nesting at low pH and neutral pH lakes in northern Wisconsin USA
Thomas W. Custer, Christine M. Custer, Wayne E. Thogmartin, Paul M. Dummer, Ronald Rossmann, Kevin P. Kenow, Michael W. Meyer
2012, Environmental Pollution (163) 68-76
The primary objective of this study was to determine whether tree swallows (Tachycineta bicolor) demonstrate similar responses to lake pH and mercury (Hg) contamination in northern Wisconsin as do common loons (Gavia immer). Similar to common loons, Hg concentrations in the blood of tree swallow nestlings were higher, Hg concentrations...
Use of real-time PCR to detect canine parvovirus in feces of free-ranging wolves
L. David Mech, Emily S. Almberg, Douglas Smith, Sagar Goyal, Randall S. Singer
2012, Journal of Wildlife Diseases (48) 473-476
Using real-time PCR, we tested 15 wolf (Canis lupus) feces from the Superior National Forest (SNF), Minnesota, USA, and 191 from Yellowstone National Park (YNP), USA, collected during summer and 13 during winter for canine parvovirus (CPV)-2 DNA. We also tested 20 dog feces for CPV-2 DNA. The PCR assay...
Mapping socio-environmentally vulnerable populations access and exposure to ecosystem services at the U.S.-Mexico borderlands
Laura M. Norman, Miguel L. Villarreal, Francisco Lara-Valencia, Yongping Yuan, Wenming Nie, Sylvia Wilson, Gladys Amaya, Rachel Sleeter
2012, Applied Geography (34) 413-424
Socio-environmental vulnerable populations are often unrepresented in land-use planning yet have great potential for loss when exposed to changes in ecosystem services. Administrative boundaries, cultural differences, and language barriers increase the disassociation between land-use management and marginalized populations living in the U.S.–Mexico borderlands. This paper describes the development of a...
Preferential flow occurs in unsaturated conditions
John R. Nimmo
2012, Hydrological Processes (26) 786-789
Because it commonly generates high-speed, high-volume flow with minimal exposure to solid earth materials, preferential flow in the unsaturated zone is a dominant influence in many problems of infiltration, recharge, contaminant transport, and ecohydrology. By definition, preferential flow occurs in a portion of a medium – that is, a preferred...
Deposition and accumulation of airborne organic contaminants in Yosemite National Park, Calfornia
Alisa M. Mast, David A. Alvarez, Steven D. Zaugg
2012, Environmental Toxicology and Chemistry (31) 524-533
Deposition and accumulation of airborne organic contaminants in Yosemite National Park were examined by sampling atmospheric deposition, lichen, zooplankton, and lake sediment at different elevations. Passive samplers were deployed in high‐elevation lakes to estimate surface‐water concentrations. Detected compounds included current‐use pesticides chlorpyrifos, dacthal, and endosulfans and legacy compounds chlordane, dichlorodiphenyltrichloroethane‐related...
Development and evaluation of a boat-mounted RFID antenna for monitoring freshwater mussels
Jesse R. Fischer, Travis E. Neebling, Michael C. Quist
2012, Freshwater Science (31) 148-153
Development of radio frequency identification (RFID) technology and passive integrated transponder (PIT) tags has substantially increased the ability of researchers and managers to monitor populations of aquatic organisms. However, use of transportable RFID antenna systems (i.e., backpack-mounted) is currently limited to wadeable aquatic environments (<1.4 m water depth). We describe...
Introduction to geospatial semantics and technology workshop handbook
Dalia E. Varanka
2012, Open-File Report 2012-1109
The workshop is a tutorial on introductory geospatial semantics with hands-on exercises using standard Web browsers. The workshop is divided into two sections, general semantics on the Web and specific examples of geospatial semantics using data from The National Map of the U.S. Geological Survey and the Open Ontology Repository....
Monitoring of stream restoration habitat on the main stem of the Methow River, Washington, during the pre-treatment phase (October 2008-May 2012) with a progress report for activities from March 2011 to November 2011
Wesley T. Tibbits, Kyle D. Martens, Patrick J. Connolly
2012, Open-File Report 2012-1108
Introduction The U.S. Geological Survey (USGS) received a request from the Bureau of Reclamation (Reclamation) to provide monitoring and an evaluation of the effectiveness of habitat actions that Reclamation plans to implement in the Upper Columbia River basin, which includes the Methow River. This monitoring and evaluation program...
Invertebrate response to changes in streamflow hydraulics in two urban areas in the United States
Rodney R. Knight, Thomas F. Cuffney
2012, Scientific Investigations Report 2012-5035
Stream hydrology is foundational to aquatic ecosystems and has been shown to be a structuring element for fish and invertebrates. The relations among urbanization, hydraulics, and invertebrate communities were investigated by the U.S. Geological Survey, National Water-Quality Assessment Program by using measures of stream hydraulics in two areas of the...
Biological assessment of environmental flows for Oklahoma
William L. Fisher, Titus S. Seilheimer, Jason M. Taylor
2012, Open-File Report 2012-1114
Large-scale patterns in fish assemblage structure and functional groups are influenced by alterations in streamflow regime. In this study, we defined an objective threshold for alteration for Oklahoma streams using a combination of the expected range of 27 flow indices and a discriminant analysis to predict flow regime group. We...
Spatial and temporal dynamics of cyanotoxins and their relation to other water quality variables in Upper Klamath Lake, Oregon, 2007-09
Sara L. Caldwell Eldridge, Tamara M. Wood, Kathy R. Echols
2012, Scientific Investigations Report 2012-5069
Phytoplankton blooms dominated by cyanobacteria that occur annually in hypereutrophic Upper Klamath Lake, Oregon, produce microcystins at concentrations that may contribute to the decline in populations of endangered Lost River (Deltistes luxatus) and shortnose (Chasmistes brevirostris) suckers. During 2007–09, water samples were collected from Upper Klamath Lake to determine the...
Dissolved oxygen analysis, TMDL model comparison, and particulate matter shunting—Preliminary results from three model scenarios for the Klamath River upstream of Keno Dam, Oregon
Annett B. Sullivan, Stewart A. Rounds, Michael L. Deas, I. Ertugrul Sogutlugil
2012, Open-File Report 2012-1101
Efforts are underway to identify actions that would improve water quality in the Link River to Keno Dam reach of the Upper Klamath River in south-central Oregon. To provide further insight into water-quality improvement options, three scenarios were developed, run, and analyzed using previously calibrated CE-QUAL-W2 hydrodynamic and water-quality models....
Aquatic organism passage at road-stream crossings—synthesis and guidelines for effectiveness monitoring
Robert L. Hoffman, Jason B. Dunham, Bruce P. Hansen
2012, Open-File Report 2012-1090
Restoration and maintenance of passage for aquatic organisms at road-stream crossings represents a major management priority, involving an investment of hundreds of millions of dollars (for example, U.S. Government Accounting Office, 2001). In recent years, passage at hundreds of crossings has been restored, primarily by replacing barrier road culverts with...
Representation of regional urban development conditions using a watershed-based gradient study design
Silvia Terziotti, Gerard McMahon, Amanda H. Bell
2012, Scientific Investigations Report 2012-5070
As part of the U.S. Geological Survey National Water-Quality Assessment Program, the effects of urbanization on stream ecosystems (EUSE) have been intensively investigated in nine metropolitan areas in the United States, including Boston, Massachusetts; Atlanta, Georgia; Birmingham, Alabama; Raleigh, North Carolina; Salt Lake City, Utah; Denver, Colorado; Dallas–Fort Worth, Texas;...
Reconnaissance of land-use sources of pesticides in drinking water, McKenzie River, Oregon
Valerie J. Kelly, Chauncey W. Anderson, Karl Morgenstern
2012, Scientific Investigations Report 2012-5091
The Eugene Water and Electric Board (EWEB) provides water and electricity to the City of Eugene, Oregon, from the McKenzie River. In the spring of 2002, EWEB initiated a pesticide monitoring program in cooperation with the U.S. Geological Survey as part of their Drinking Water Source Protection Plan. Approximately twice...
Sound data management as a foundation for natural resources management and science
Thomas E. Burley
2012, Fact Sheet 2011-3038
Effective decision making is closely related to the quality and completeness of available data and information. Data management helps to ensure data quality in any discipline and supports decision making. Managing data as a long-term scientific asset helps to ensure that data will be usable beyond the original intended application....