MODFLOW-NWT – Robust handling of dry cells using a Newton Formulation of MODFLOW-2005
Randal J. Hunt, Daniel T. Feinstein
2012, Ground Water (50) 659-663
The first versions of the widely used groundwater flow model MODFLOW (McDonald and Harbaugh 1988) had a sure but inflexible way of handling unconfined finite-difference aquifer cells where the water table dropped below the bottom of the cell—these "dry cells" were turned inactive for the remainder of the simulation. Problems...
North slope of Alaska
Jonathan Bart, Stephen Brown, Brad Andres, Robert Platte, Ann Manning
Jonathan Bart, Victoria Johnston, editor(s)
2012, Book chapter, Arctic shorebirds in North America: A decade of monitoring
No abstract available....
KINEROS2/AGWA: Model use, calibration and validation
D.C. Goodrich, I.S. Burns, C.L. Unkrich, Darius J. Semmens, D.P. Guertin, M. Hernandez, S. Yatheendradas, Jeffrey R. Kennedy, Lainie R. Levick
2012, Transactions of the ASABE (55) 1561-1574
KINEROS (KINematic runoff and EROSion) originated in the 1960s as a distributed event-based model that conceptualizes a watershed as a cascade of overland flow model elements that flow into trapezoidal channel model elements. KINEROS was one of the first widely available watershed models that interactively coupled a finite difference approximation...
Humic acid facilitates the transport of ARS-labeled hydroxyapatite nanoparticles in iron oxyhydroxide-coated sand
Dengjun Wang, Scott A. Bradford, Ronald W. Harvey, Bin Gao, Long Cang, Dongmei Zhou
2012, Environmental Science & Technology (46) 2738-2745
Hydroxyapatite nanoparticles (nHAP) have been widely used to remediate soil and wastewater contaminated with metals and radionuclides. However, our understanding of nHAP transport and fate is limited in natural environments that exhibit significant variability in solid and solution chemistry. The transport and retention kinetics of Alizarin red S (ARS)-labeled nHAP...
Nekton density patterns and hurricane recovery in submerged aquatic vegetation, and along non-vegetated natural and created edge habitats
Megan La Peyre, J. Gordon
2012, Estuarine, Coastal and Shelf Science (98) 108-118
We compared nekton habitat value of submerged aquatic vegetation, flooded non-vegetated natural and man-made edge habitats in mesohaline interior marsh areas in southwest Louisiana using a 1-m2 throw trap and 3-mm bag seine. When present, SAV habitats supported close to 4 times greater densities and higher species richness of nekton as compared to either natural or man-made...
Use of occupancy models to evaluate expert knowledge-based species-habitat relationships
Monica N. Iglecia, Jaime A. Collazo, Alexa McKerrow
2012, Avian Conservation and Ecology (7) 1-13
Expert knowledge-based species-habitat relationships are used extensively to guide conservation planning, particularly when data are scarce. Purported relationships describe the initial state of knowledge, but are rarely tested. We assessed support in the data for suitability rankings of vegetation types based on expert knowledge for three terrestrial avian species in...
Science summary in support of Manatee Protection Area (MPA) design in Puerto Rico
C. Ashton Drew, Louise B. Alexander-Vaughn, Jaime A. Collazo
2012, Cooperator Science Series FWS/CSS-101-2012
The Antillean manatee (Trichechus manatus manatus), a subspecies of the West Indian manatee, is listed as endangered by the US Department of Interior. In accordance with its listing, the U.S. Fish and Wildlife Service’s Caribbean Field Office (USFWS) is mandated to create one or more Manatee Protection Areas (MPAs) for...
Fluvial transport and surface enrichment of arsenic in semi-arid mining regions: examples from the Mojave Desert, California
Christopher S. Kim, David H. Slack, James J. Rytuba
2012, Journal of Environmental Monitoring (14) 1798-1813
As a result of extensive gold and silver mining in the Mojave Desert, southern California, mine wastes and tailings containing highly elevated arsenic (As) concentrations remain exposed at a number of former mining sites. Decades of weathering and erosion have contributed to the mobilization of As-enriched tailings, which now contaminate...
Expert knowledge as a foundation for the management of secretive species and their habitat
C. Ashton Drew, Jaime Collazo
2012, Book chapter, Expert knowledge and its application in landscape ecology
In this chapter, we share lessons learned during the elicitation and application of expert knowledge in the form of a belief network model for the habitat of a waterbird, the King Rail (Rallus elegans). A belief network is a statistical framework used to graphically represent and evaluate hypothesized...
Three-dimensional sensitivity distribution and sample volume of low-induction-number electromagnetic-induction instruments
James B. Callegary, T.P.A. Ferre, R.W. Groom
2012, Soil Science Society of America Journal (76) 85-91
There is an ongoing effort to improve the understanding of the correlation of soil properties with apparent soil electrical conductivity as measured by low‐induction‐number electromagnetic‐induction (LIN FEM) instruments. At a minimum, the dimensions of LIN FEM instruments' sample volume, the spatial distribution of sensitivity within that volume, and implications for...
Target loads of atmospheric sulfur and nitrogen deposition for protection of acid sensitive aquatic resources in the Adirondack Mountains, New York
T.J. Sullivan, B.J. Cosby, C. T. Driscoll, T.C. McDonnell, A.T. Herlihy, Douglas A. Burns
2012, Water Resources Research (48)
The dynamic watershed acid-base chemistry model of acidification of groundwater in catchments (MAGIC) was used to calculate target loads (TLs) of atmospheric sulfur and nitrogen deposition expected to be protective of aquatic health in lakes in the Adirondack ecoregion of New York. The TLs were calculated for two future dates...
Assessing freshwater habitat of adult anadromous alewives using multiple approaches
Martha E. Mather, Holly J. Frank, Joseph M. Smith, Roxann D. Cormier, Robert M. Muth, John T. Finn
2012, Marine and Coastal Fisheries: Dynamics, Management, and Ecosystem Science (4) 188-200
After centuries of disturbance, environmental professionals now recognize the need to restore coastal watersheds for native fish and protect the larger ecosystems on which fish and other aquatic biota depend. Anadromous fish species are an important component of coastal ecosystems that are often adversely affected by human activities. Restoring native...
An experimental test and models of drift and dispersal processes of pallid sturgeon (Scaphirhynchus albus) free embryos in the Missouri River
P.J. Braaten, D.B. Fuller, R.D. Lott, M.P. Ruggles, T.F. Brandt, R.G. Legare, R.J. Holm
2012, Environmental Biology of Fishes (93) 377-392
Free embryos of wild pallid sturgeon Scaphirhynchus albus were released in the Missouri River and captured at downstream sites through a 180-km reach of the river to examine ontogenetic drift and dispersal processes. Free embryos drifted primarily in the fastest portion of the river channel, and initial drift velocities for...
Species traits and environmental conditions govern the relationship between biodiversity effects across trophic levels
D.E. Spooner, C.C. Vaughn, H.S. Galbraith
2012, Oecologia (168) 533-548
Changing environments can have divergent effects on biodiversity–ecosystem function relationships at alternating trophic levels. Freshwater mussels fertilize stream foodwebs through nutrient excretion, and mussel species-specific excretion rates depend on environmental conditions. We asked how differences in mussel diversity in varying environments influence the dynamics between primary producers and consumers. We...
Post-fledging brood and care division in the roseate tern (Sterna dougallii)
M.J. Watson, J. A. Spendelow, J.J. Hatch
2012, Journal of Ethology (30) 29-34
Extended post-fledging parental care is an important aspect of parental care in birds, although little studied due to logistic difficulties. Commonly, the brood is split physically (brood division) and/or preferential care is given to a subset of the brood by one parent or the other (care division). Among gulls and...
Hierarchy in factors affecting fish biodiversity in floodplain lakes of the Mississippi Alluvial Valley
D.J. Dembkowski, L.E. Miranda
2012, Environmental Biology of Fishes (93) 357-368
River-floodplain ecosystems offer some of the most diverse and dynamic environments in the world. Accordingly, floodplain habitats harbor diverse fish assemblages. Fish biodiversity in floodplain lakes may be influenced by multiple variables operating on disparate scales, and these variables may exhibit a hierarchical organization depending on whether one variable governs...
Monitoring biodegradation of ethene and bioremediation of chlorinated ethenes at a contaminated site using compound-specific isotope analysis (CSIA)
S.O.C. Mundle, T. Johnson, G. Lacrampe-Couloume, A. Perez-De-Mora, M. Duhamel, E.A. Edwards, M.L. McMaster, E. Cox, K. Revesz, B. Sherwood Lollar
2012, Environmental Science & Technology (46) 1731-1738
Chlorinated ethenes are commonly found in contaminated groundwater. Remediation strategies focus on transformation processes that will ultimately lead to nontoxic products. A major concern with these strategies is the possibility of incomplete dechlorination and accumulation of toxic daughter products (cis-1,2-dichloroethene (cDCE), vinyl chloride (VC)). Ethene mass balance can be used...
Tidally driven export of dissolved organic carbon, total mercury, and methylmercury from a mangrove-dominated estuary
Brian A. Bergamaschi, D. P. Krabbenhoft, George Aiken, Eduardo Patino, D.G. Rumbold, William H. Orem
2012, Environmental Science & Technology (46) 1371-1378
The flux of dissolved organic carbon (DOC) from mangrove swamps accounts for 10% of the global terrestrial flux of DOC to coastal oceans. Recent findings of high concentrations of mercury (Hg) and methylmercury (MeHg) in mangroves, in conjunction with the common co-occurrence of DOC and Hg species, have raised concerns...
Modeling aeolian transport in response to succession, disturbance and future climate: Dynamic long-term risk assessment for contaminant redistribution
D.D. Breshears, T.B. Kirchner, J.J. Whicker, J.P. Field, Craig D. Allen
2012, Aeolian Research (3) 445-457
Aeolian sediment transport is a fundamental process redistributing sediment, nutrients, and contaminants in dryland ecosystems. Over time frames of centuries or longer, horizontal sediment fluxes and associated rates of contaminant transport are likely to be influenced by succession, disturbances, and changes in climate, yet models of horizontal sediment transport that...
A preliminary assessment of the spatial sources of contemporary suspended sediment in the Ohio River basin, United States, using water quality data from the NASQAN programme in a source tracing procedure
Y.-S. Zhang, A.L. Collins, Arthur J. Horowitz
2012, Hydrological Processes (26) 326-334
Reliable information on catchment scale suspended sediment sources is required to inform the design of management strategies for helping abate the numerous environmental issues associated with enhanced sediment mobilization and off‐site loadings. Since sediment fingerprinting techniques avoid many of the logistical constraints associated with using more traditional indirect measurement methods...
Analogues of doxanthrine reveal differences between the dopamine D1 receptor binding properties of chromanoisoquinolines and hexahydrobenzo[a]phenanthridines
J.P. Cueva, Benjamin R. Chemel, J.I. Juncosa Jr., M.A. Lill, V.J. Watts, D.E. Nichols
2012, European Journal of Medicinal Chemistry (48) 97-107
Efforts to develop selective agonists for dopamine D1-like receptors led to the discovery of dihydrexidine and doxanthrine, two bioisosteric β-phenyldopamine-type full agonist ligands that display selectivity and potency at D1-like receptors. We report herein an improved methodology for the synthesis of substituted chromanoisoquinolines (doxanthrine derivatives) and the evaluation of several new compounds for their...
Field experiment provides ground truth for surface nuclear magnetic resonance measurement
R. Knight, E. Grunewald, T. Irons, K. Dlubac, Y. Song, H.N. Bachman, B. Grau, D. Walsh, J.D. Abraham, J. Cannia
2012, Geophysical Research Letters (39) 1-7
The need for sustainable management of fresh water resources is one of the great challenges of the 21st century. Since most of the planet's liquid fresh water exists as groundwater, it is essential to develop non-invasive geophysical techniques to characterize groundwater aquifers. A field experiment was conducted in the High...
Patterns of natural mortality in stream-living brown trout (Salmo trutta)
J. Lobon-Cervia, P. Budy, E. Mortensen
2012, Freshwater Biology (57) 575-588
1. We tested the hypothesis that lifetime mortality patterns and their corresponding rates and causal factors differ among populations of stream‐living salmonids. To this end, we examined the lifetime mortality patterns of several successive cohorts of two stream‐living brown trout (Salmo trutta) populations in Spain and Denmark.2. In the southern...
SYBR green-based real-time reverse transcription-PCR for typing and subtyping of all hemagglutinin and neuraminidase genes of avian influenza viruses and comparison to standard serological subtyping tests
K. Tsukamoto, P.C. Javier, M. Shishido, D. Noguchi, John M. Pearce, H.-M. Kang, O.M. Jeong, Y.-J. Lee, K. Nakanishi, T. Ashizawa
2012, Journal of Clinical Microbiology (50) 37-45
Continuing outbreaks of H5N1 highly pathogenic (HP) avian influenza virus (AIV) infections of wild birds and poultry worldwide emphasize the need for global surveillance of wild birds. To support the future surveillance activities, we developed a SYBR green-based, real-time reverse transcriptase PCR (rRT-PCR) for detecting nucleoprotein (NP) genes and subtyping...
Discovery and characterization of secretory IgD in rainbow trout: secretory IgD is produced through a novel splicing mechanism
F. Ramirez-Gomez, W. Greene, K. Rego, J.D. Hansen, G. Costa, P. Kataria, E.S. Bromage
2012, Journal of Immunology (188) 1341-1349
The gene encoding IgH δ has been found in all species of teleosts studied to date. However, catfish (Ictalurus punctatus) is the only species of fish in which a secretory form of IgD has been characterized, and it occurs through the use of a dedicated δ-secretory exon, which is absent...