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Not all publications have extents, not all extents are completely accurate
Integrating sequence capture and restriction-site associated DNA sequencing to resolve recent radiations of pelagic seabirds
Joan Ferrer Obiol, Helen F. James, R. Terry Chesser, Vincent Bretagnolle, Jacob Gonzalez-Solis, Julio Rozas, Marta Riutort, Andreanna J. Welch
2021, Systematic Biology (70) 976-996
The diversification of modern birds has been shaped by a number of radiations. Rapid diversification events make reconstructing the evolutionary relationships among taxa challenging due to the convoluted effects of incomplete lineage sorting (ILS) and introgression. Phylogenomic data sets have the potential to detect patterns of phylogenetic incongruence, and to...
A regional spatio-temporal analysis of large magnitude snow avalanches using tree rings
Erich H. Peitzsch, Jordy Hendrikx, Daniel Kent Stahle, Gregory T. Pederson, Karl W. Birkeland, Daniel B. Fagre
2021, Natural Hazards and Earth System Sciences (21) 533-557
Snow avalanches affect transportation corridors and settlements worldwide. In many mountainous regions, robust records of avalanche frequency and magnitude are sparse or non-existent. However, dendrochronological methods can be used to fill this gap and infer historical avalanche patterns. In this study, we developed a tree-ring-based avalanche chronology for large magnitude...
Ground‐penetrating radar, electromagnetic induction, terrain, and vegetation observations coupled with machine learning to map permafrost distribution at Twelvemile Lake, Alaska
S. Campbell, Martin A. Briggs, S.P. Roy, T. A. Douglas, S. Saari
2021, Permafrost and Periglacial Processes (32) 407-426
We collected ground‐penetrating radar (GPR) and frequency‐domain electromagnetic induction (FDEM) profiles in 2011 and 2012 to identify the extent of permafrost relative to surface biomass and solar insolation around Twelvemile Lake near Fort Yukon, Alaska. We compared a Landsat‐derived biomass estimate and modeled solar insolation from...
Can modeling the geologic record contribute to constraining the tectonic source of the AD 1755 Great Lisbon earthquake?
Francisco Dourado, Pedro JM Costa, SeanPaul La Selle, Caesar Andrade, Ivana Bosnic, Guy R. Gelfenbaum
2021, Earth and Space Science (8)
The precise location of the seismic source of 1755 CE Great Lisbon earthquake is still uncertain. The aim of this work is to use an onland sedimentary record in southern Portugal to test and validate seismic sources for the earthquake. To achieve this, tsunami deposit thicknesses from...
Stream classification and gravel-bar inventory for Buffalo National River and Ozark National Scenic Riverways
Susannah O. Erwin, Robert B. Jacobson, Jabari C. Jones
2021, Scientific Investigations Report 2020-5122
The data summarized in this report provide a baseline characterization of the physical attributes of the riverine ecosystems in two landscapes managed by the National Park Service—Ozark National Scenic Riverways, Missouri, and Buffalo National River, Arkansas—to inform understanding and management of aquatic habitat. The study utilized a basin-scale approach and...
Multi-region assessment of chemical mixture exposures and predicted cumulative effects in USA wadeable urban/agriculture-gradient streams
Paul M. Bradley, Celeste A. Journey, Kristin M. Romanok, Sara E. Breitmeyer, Daniel T. Button, Daren M. Carlisle, Bradley Huffman, Barbara Mahler, Lisa H. Nowell, Sharon L. Qi, Kelly L. Smalling, Ian R. Waite, Peter C. Van Metre
2021, Science of the Total Environment (773)
Chemical-contaminant mixtures are widely reported in large stream reaches in urban/agriculture-developed watersheds, but mixture compositions and aggregate biological effects are less well understood in corresponding smaller headwaters, which comprise most of stream length, riparian connectivity, and spatial biodiversity. During 2014–2017, the U.S. Geological Survey (USGS) measured 389 unique organic analytes (pharmaceutical,...
Hydrologic and hydraulic analyses of the Grand River, Red Cedar River, and Sycamore Creek near Lansing, Michigan
Matthew T. Whitehead, Chad J. Ostheimer
2021, Scientific Investigations Report 2020-5144
The U.S. Geological Survey (USGS) completed hydrologic and hydraulic analyses for selected reaches of the Grand River, Red Cedar River, and Sycamore Creek near Lansing, Michigan, in cooperation with the city of Lansing. The study comprised a 3.1-mile reach of the Grand River, a 30.3-mile reach of the Red Cedar...
Biotic and abiotic determinants of finescale dace distribution at the southern edge of their range
Evan C. J. Booher, Annika W. Walters
2021, Diversity and Distributions (27) 696-709
AimThe factors that set range limits for animal populations can inform management plans aimed at maintaining regional biodiversity. We examine abiotic and biotic drivers of the distribution of finescale dace (Chrosomus neogaeus) in two Great Plains basins to identify limiting factors for a threatened freshwater fish population...
Waterfowl use of wetland habitats informs wetland restoration designs for multi‐species benefits
Michael L. Casazza, Fiona McDuie, Scott Jones, Austen Lorenz, Cory T. Overton, Julie L. Yee, Cliff L. Feldheim, Joshua T. Ackerman, Karen M. Thorne
2021, Journal of Applied Ecology (58) 1910-1920
Extensive global estuarine wetland losses have prompted intensive focus on restoration of these habitats. In California, substantial tracts of freshwater, brackish and tidal wetlands have been lost. Given the anthropogenic footprint of development and urbanization in this region, wetland restoration must rely on conversion of existing habitat types rather...
Summary of available data from the monarch overwintering colonies in central Mexico, 1976–1991
Erin R Zylstra, Wayne E. Thogmartin, M. Isabel Ramirez, Elise F. Zipkin
2021, Open-File Report 2020-1150
Historical estimates of the area occupied by overwintering Danaus plexippus (monarchs) in central Mexico (between winters of 1976 and 1991) were published in García-Serrano and others (2004) and more recently in Mawdsley and others (2020). Our primary objectives were to identify the specific data that informed those estimates and, importantly,...
Retention of passive integrated transponder tags in a small-bodied catfish
Timothy W. D’Amico, Dana L. Winkelman, Tyler R. Swarr, Christopher A. Myrick
2021, North American Journal of Fisheries Management (41) 187-195
Members of the freshwater catfishes (order Siluriformes) are capable of transintestinal expulsion of foreign bodies, including internally implanted tags, which can bias movement and survival estimates. We evaluated long-term (120-week) retention rates of passive integrated transponder (PIT) tags in a laboratory setting to assess potential tag loss in Stonecat Noturus...
In-situ monitoring of infiltration-induced instability of I-70 embankment west of the Eisenhower-Johnson Memorial Tunnels, phase III
Alexandra Wayllace, Ning Lu, Benjamin B. Mirus
2021, Colorado Department of Transportation Report 2021-08
A new methodology that uses recent advances in unsaturated soil mechanics and hydrology was developed and tested. The approach consists of using soil suction and moisture content field information in the prediction of the likelihood of landslide movement. The testing ground was an active landslide on I-70 west of the...
Effectiveness of a distance sampling from roads program for white-tailed deer in the National Capital Region parks
Nicholas S. Green, Mark L. Wildhaber, Janice L. Albers
2021, Natural Resource Report 2021/2224
We evaluated the effectiveness of a distance sampling from roads program for estimating population sizes of white-tailed deer (Odocoileus virginianus) from 2001 to 2015 in parks of the National Capital Region (NCR), National Parks Service. Distance sampling is a method for estimating the density of organisms using a distribution of...
Sex-specific behaviors of hunted mule deer during rifle season
Patrick A. Rodgers, Hall Sawyer, Tony W. Mong, Sam Stephens, Matthew J. Kauffman
2021, Journal of Wildlife Management (85) 215-227
Animal populations face increased threats to mobility and access to critical habitat from a variety of human disturbances including roads, residential development, agriculture, and energy development. Disturbance from human hunting is known to alter habitat use in ungulates, but recent work suggests that hunting may also trigger the onset of...
Sap flow evidence of chilling injury and recovery in mangroves following a spring cold spell
Xiaoxuan Gu, Chen Yang, Hewei Zhao, Naxu Hu, Ken Krauss, Chuanyuan Deng, Luzhen Chen
2021, Trees: Structure and Function (35) 907-917
Mangroves are periodically influenced in negative ways by non-freezing temperatures across their global sub-tropical range. However, physiological and morphological evidence of chilling influences to non-freezing chilling events has not been measured in field settings. In this study, we measured sap flow (Js) during such a chilling (but non-freezing) event in...
Evidence for maternal style among adult female dolphins when sharing pectoral fin contacts with their calves
Kathleen M. Dudzinski, Christine Ribic, Heather M. Manitzas-Hill, Teresa T. Bolton
2021, Animal Behavior and Cognition (8) 52-68
Adult bottlenose dolphins share pectoral fin contacts (PFC) to manage their social relationships but less is known about how mothers share PFC with their calves. Using a dataset collected over 16 years, we analyzed how 10 matrilines, including three second generation female dolphins in a maternal role, used PFC with...
Learning augmented methods for matching: Improving invasive species management and urban mobility
Johan Bjorck, Qinru Shi, Carrie Brown-Lima, Jennifer Dean, Angela K. Fuller, Carla Gomes
2021, Conference Paper, Proceedings of the AAAI conference on artificial intelligence
With the success of machine learning, integrating learned models into real-world systems has become a critical chal- lenge. Naively applying predictions to combinatorial opti- mization problems can incur high costs, which has motivated researchers to consider learning augmented algorithms that can make use of faulty or incomplete predictions. Inspired by...
Applications of bistatic radar to volcano topography – A review of 10 years of TanDEM-X
Julia Kubanek, Michael Poland, Juliet Biggs
2021, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing (14) 3282-3302
The TanDEM-X satellite mission has revolutionized DEM generation from spaceborne synthetic aperture radar. In addition to the primary objective of generating a consistent digital elevation model with global coverage and unprecedented accuracy, the mission has acquired time series of topographic data over several volcanoes, providing an excellent opportunity to test...
Extrinsically reinforced hybrid speciation within Holarctic ermine (Mustela spp.) produces an insular endemic
Jocelyn P. Colella, Lindsey Frederick, Sandra L. Talbot, Joe Cook
2021, Diversity and Distributions (27) 747-762
AimRefugial isolation during glaciation is an established driver of speciation; however, the opposing role of interglacial population expansion, secondary contact, and gene flow on the diversification process remains less understood. The consequences of glacial cycling on diversity are complex and especially so for archipelago species, which experience...
Time since burning and rainfall characteristics impact post-fire debris flow initiation and magnitude
Luke A. McGuire, Francis K. Rengers, Nina S. Oakley, Jason W. Kean, Dennis M. Staley, Hui Tang, Marian de Orla-Barile, Ann M. Youberg
2021, Environmental Engineering and Geology (27) 43-56
The extreme heat from wildfire alters soil properties and incinerates vegetation, leading to changes in infiltration capacity, ground cover, soil erodibility, and rainfall interception. These changes promote elevated rates of runoff and sediment transport that increase the likelihood of runoff-generated debris flows. Debris flows are...
Beware of spatial autocorrelation when applying machine learning algorithms to borehole geophysical logs
Neil C. Terry, Carole D. Johnson, Frederick Day-Lewis, Beth L. Parker, Lee D. Slater
2021, Groundwater (59) 315-319
Although many of the algorithms now considered to be machine learning algorithms (MLAs) have existed for nearly a century (e.g., Rosenblatt 1958), interest in MLAs has recently increased exponentially for solving data-driven problems across a variety of fields due to the expanded availability of large, complex datasets that may be difficult...
Evaluation of a satellite-based cyanobacteria bloom detection algorithm using field-measured microcystin data
Sachidananda Mishra, Richard P. Stumpf, Blake Schaeffer, P. Jeremy Werdell, Keith A. Loftin, Andrew Meredith
2021, Science for the Total Environment (774)
Widespread occurrence of cyanobacterial harmful algal blooms (CyanoHABs) and the associated health effects from potential cyanotoxin exposure has led to a need for systematic and frequent screening and monitoring of lakes that are used as recreational and drinking water sources. Remote sensing-based methods are often used for synoptic and frequent...
Estimates of county-level nitrogen and phosphorus from fertilizer and manure from 1950 through 2017 in the conterminous United States
James A. Falcone
2021, Open-File Report 2020-1153
This report and associated dataset provide tabular county-level estimates of kilograms of nitrogen and phosphorus generated from two sources: (a) fertilizer from commercial sources and (b) livestock-based manure, for the period 1950 through 2017 for the conterminous United States. Datasets collected during this time span are for intervals of approximately...
Characterization of groundwater quality and discharge with emphasis on selenium in an irrigated agricultural drainage near Delta, Colorado, 2017–19
M. Alisa Mast
2021, Scientific Investigations Report 2020-5132
Selenium is a water-quality constituent of concern for aquatic ecosystems in the lower Gunnison River Basin. Selenium is derived from bedrock of the Mancos Shale and is mobilized and transported to groundwater and surface water by application of irrigation water. Although it is recognized that groundwater contributes an appreciable amount...
Piloting urban ecosystem accounting for the United States
Mehdi Heris, Kenneth J. Bagstad, Charles Rhodes, Austin Troy, Ariane Middel, Kristina G. Hopkins, John Matuszak
2021, Ecosystem Services (48)
In this study, we develop urban ecosystem accounts in the U.S., using the System of Environmental-Economic Accounting Experimental Ecosystem Accounting (SEEA EEA) framework. Most ecosystem accounts focus on regional and national scales, which are appropriate for many ecosystem services. However, ecosystems provide substantial services in cities, improving quality of life...