Continuous water-quality and suspended-sediment transport monitoring in the San Francisco Bay, California, water years 2014–15
Paul A. Buchanan, Maureen A. Downing-Kunz, David H. Schoellhamer, Daniel N. Livsey
2018, Fact Sheet 2018-3013
The U.S. Geological Survey (USGS) monitors water quality and suspended-sediment transport in the San Francisco Bay (bay) as part of a multi-agency effort to address management, water supply, and ecological concerns. The San Francisco Bay area is home to millions of people, and the bay teems both with resident and...
Estimates of nitrate loads and yields from groundwater to streams in the Chesapeake Bay watershed based on land use and geology
Silvia Terziotti, Paul D. Capel, Anthony J. Tesoriero, Jessica A. Hopple, Scott C. Kronholm
2018, Scientific Investigations Report 2017-5160
The water quality of the Chesapeake Bay may be adversely affected by dissolved nitrate carried in groundwater discharge to streams. To estimate the concentrations, loads, and yields of nitrate from groundwater to streams for the Chesapeake Bay watershed, a regression model was developed based on measured nitrate concentrations from 156...
SWToolbox: A surface-water tool-box for statistical analysis of streamflow time series
Julie E. Kiang, Kate Flynn, Tong Zhai, Paul Hummel, Gregory E. Granato
2018, Techniques and Methods 4-A11
This report is a user guide for the low-flow analysis methods provided with version 1.0 of the Surface Water Toolbox (SWToolbox) computer program. The software combines functionality from two software programs—U.S. Geological Survey (USGS) SWSTAT and U.S. Environmental Protection Agency (EPA) DFLOW. Both of these programs have been used primarily...
Human Bacteroides and total coliforms as indicators of recent combined sewer overflows and rain events in urban creeks
Shannon McGinnis, Susan K. Spencer, Aaron D. Firnstahl, Joel P. Stokdyk, Mark A. Borchardt, David McCarthy, Heather Murphy
2018, Science of the Total Environment (630) 967-976
Combined sewer overflows (CSOs) are a known source of human fecal pollution and human pathogens in urban water bodies, which may present a significant public health threat. To monitor human fecal contamination in water, bacterial fecal indicator organisms (FIOs) are traditionally used. However, because FIOs are not specific to human...
Changes in freshwater mussel communities linked to legacy pollution in the Lower Delaware River
Carrie J. Blakeslee, Erik L. Silldorff, Heather S. Galbraith
2018, Northeastern Naturalist (25) 101-116
Freshwater mussels are among the most-imperiled organisms worldwide, although they provide a variety of important functions in the streams and rivers they inhabit. Among Atlantic-slope rivers, the Delaware River is known for its freshwater mussel diversity and biomass; however, limited data are available on the freshwater mussel fauna in the...
Environmental conditions synchronize waterbird mortality events in the Great Lakes
Karine Prince, Jennifer G. Chipault, C. LeAnn White, Benjamin Zuckerberg
2018, Journal of Applied Ecology (55) 1327-1338
Since the 1960s, periodic outbreaks of avian botulism type E have contributed to large-scale die-offs of thousands of waterbirds throughout the Great Lakes of the United States. In recent years, these events have become more common and widespread. Occurring during the summer and autumn months, the prevalence...
Metamodeling and mapping of nitrate flux in the unsaturated zone and groundwater, Wisconsin, USA
Bernard T. Nolan, Christopher T. Green, Paul F. Juckem, Lixia Liao, James E. Reddy
2018, Journal of Hydrology (559) 428-441
Nitrate contamination of groundwater in agricultural areas poses a major challenge to the sustainability of water resources. Aquifer vulnerability models are useful tools that can help resource managers identify areas of concern, but quantifying nitrogen (N) inputs in such models is challenging, especially at large spatial scales. We sought to...
Comparability of river suspended-sediment sampling and laboratory analysis methods
Joel T. Groten, Gregory D. Johnson
2018, Scientific Investigations Report 2018-5023
Accurate measurements of suspended sediment, a leading water-quality impairment in many Minnesota rivers, are important for managing and protecting water resources; however, water-quality standards for suspended sediment in Minnesota are based on grab field sampling and total suspended solids (TSS) laboratory analysis methods that have underrepresented concentrations of suspended sediment...
Groundwater-level analysis of selected wells in the Hoosic River Valley near Hoosick Falls, New York, for aquifer framework and properties
John H. Williams, Paul M. Heisig
2018, Open-File Report 2018-1015
The U.S. Geological Survey, in cooperation with the New York State Department of Environmental Conservation, analyzed groundwater levels, drilling record logs, and field water-quality data from selected wells, and the surficial geology in the Hoosic River valley south of the village of Hoosick Falls, New York, to provide information about...
Long-term nutrient reductions lead to the unprecedented recovery of a temperate coastal region
Jonathan S. Lefcheck, Robert J. Orth, William C. Dennison, Dave J Wilcox, Rebecca R. Murphy, Jennifer L. Keisman, Cassie Gurbisz, Michael P. Hannam, J. Brooke Landry, Kenneth A. Moore, Christopher J. Patrick, Jeremy Testa, Donald E. Weller, Richard A. Batiuk
2018, PNAS (115) 3658-3662
Human actions, including nutrient pollution, are causing the widespread degradation of coastal habitats, and efforts to restore these valuable ecosystems have been largely unsuccessful or of limited scope. We provide an example of successful restoration linking effective management of nutrients to the successful recovery of submersed aquatic vegetation along thousands...
Collection methods and quality assessment for Escherichia coli, water quality, and microbial source tracking data within Tumacácori National Historical Park and the upper Santa Cruz River, Arizona, 2015-16
Nicholas V. Paretti, Alissa L. Coes, Christopher M. Kephart, Justine P. Mayo
2018, Scientific Investigations Report 2017-5139
Tumacácori National Historical Park protects the culturally important Mission, San José de Tumacácori, while also managing a portion of the ecologically diverse riparian corridor of the Santa Cruz River. This report describes the methods and quality assurance procedures used in the collection of water samples for the analysis of Escherichia coli (E....
Performance metrics for the assessment of satellite data products: An ocean color case study
Bridget N. Seegers, Richard P. Stumpf, Blake A. Schaeffer, Keith A. Loftin, P. Jeremy Werdell
2018, Optics Express (26) 7404-7422
Performance assessment of ocean color satellite data has generally relied on statistical metrics chosen for their common usage and the rationale for selecting certain metrics is infrequently explained. Commonly reported statistics based on mean squared errors, such as the coefficient of determination (r2), root mean square error, and regression slopes,...
Modeling intrinsic potential for beaver (Castor canadensis) habitat to inform restoration and climate change adaptation
Benjamin J. Dittbrenner, Michael M. Pollack, Jason W. Schilling, Julian D. Olden, Joshua J. Lawler, Christian E. Torgersen
2018, PLoS ONE (13)
Through their dam-building activities and subsequent water storage, beaver have the potential to restore riparian ecosystems and offset some of the predicted effects of climate change by modulating streamflow. Thus, it is not surprising that reintroducing beaver to watersheds from which they have been extirpated is an often-used restoration and...
Volcanic ash deposition, eelgrass beds, and inshore habitat loss from the 1920s to the 1990s at Chignik, Alaska
Mark Zimmermann, Gregory T. Ruggerone, Jeffrey T. Freymueller, Nicole Kinsman, David H. Ward, Kyle R. Hogrefe
2018, Estuarine, Coastal and Shelf Science (202) 69-86
We quantified the shallowing of the seafloor in five of six bays examined in the Chignik region of the Alaska Peninsula, confirming National Ocean Service observations that 1990s hydrographic surveys were shallower than previous surveys from the 1920s. Castle Bay, Chignik Lagoon, Hook Bay, Kujulik Bay and Mud Bay lost volume as calculated from...
Carbon budget of tidal wetlands, estuaries, and shelf waters of eastern North America
R.G. Najjar, M. Herrmann, Richard B. Alexander, E.W. Boyer, D. J. Burdige, D. Butman, W.-J. Cai, E.A. Canuel, R.F. Chen, M. A. M. Friedrichs, R.A. Feagin, P. C. Griffith, A.L. Hinson, J.R. Holmquist, X. Hu, W.M. Kemp, Kevin D. Kroeger, A. Mannino, S.L. McCallister, W.R. McGillis, M.R. Mulholland, C. H. Pilskaln, J. Salisbury, S. R. Signorini, P. St. Laurent, H. Tian, M Tzortziou, P. Vlahos, Zhanming Wan, R. C. Zimmerman
2018, Global Biogeochemical Cycles (32) 389-416
Carbon cycling in the coastal zone affects global carbon budgets and is critical for understanding the urgent issues of hypoxia, acidification, and tidal wetland loss. However, there are no regional carbon budgets spanning the three main ecosystems in coastal waters: tidal wetlands, estuaries, and shelf waters. Here we construct such...
Fish response to contemporary timber harvest practices in a second-growth forest from the central Coast Range of Oregon
Douglas S. Bateman, Robert E. Gresswell, Dana Warren, David Hockman-Wert, David W. Leer, Jeffrey T. Light, John D. Stednick
2018, Forest Ecology and Management (411) 142-157
We used a paired-watershed approach to investigate the effects of contemporary logging practices on headwater populations of coastal cutthroat trout (Oncorhynchus clarkii clarkii) and juvenile coho salmon (Oncorhynchus kisutch) in a second-growth Douglas-fir forested catchment in Oregon. Stream habitat and fish population characteristics, including biomass, abundance, growth, size, and movement,...
Sensitivity of Na+/K+-ATPase isoforms to acid and aluminum explains differential effects on Atlantic salmon osmoregulation in fresh water and seawater
Amy M. Regish, John T. Kelly, Michael F. O'Dea, Stephen D. McCormick
2018, Canadian Journal of Fisheries and Aquatic Sciences (75) 1319-1328
Atlantic salmon (Salmo salar) smolts are sensitive to acid rain and associated increases in dissolved inorganic aluminum (Al) resulting in decreased seawater tolerance at this critical life stage. Salmon have two major isoforms of the catalytic alpha subunit of Na+/K+-ATPase (NKA), with NKAα1a being the major freshwater (FW) isoform and...
Convergence of marine megafauna movement patterns in coastal and open oceans
A. M. M. Sequeira, J.P. Rodriguez, V. M. Eguíluz, R. Harcourt, M. Hindell, D.W. Sims, C.M. Duarte, D.P. Costa, J. Fernandez-Gracia, L.C. Ferreira, G.C. Hays, M. R. Heupel, M.G. Meekan, A. Aven, F. Bailleul, A. M. M. Baylis, M. L. Berumen, C. D. Braun, J. Burns, M.J. Caley, R. Campbell, R.H. Carmichael, E. Clua, L. D. Einoder, Ari Friedlaender, M. E. Goebel, S.D. Goldsworthy, C. Guinet, J. Gunn, D. Hamer, N. Hammerschlag, M. Hammill, L.A. Hückstädt, N.E. Humphries, M.-A. Lea, A. Lowther, A. Mackay, E. McHuron, J. Mckenzie, L. McLeay, C.R. McMahon, K. Mengersen, M. M. C. Muelbert, Anthony M. Pagano, B. Page, N. Queiroz, P. W. Robinson, S. A. Shaffer, M. Shivji, G. B. Skomal, S. Thorrold, S. Villegas-Amtmann, M. Weise, R. Wells, B. Wetherbee, A. Wiebkin, B. Wienecke, M. Thums
2018, Proceedings of the National Academy of Sciences (115) 3072-3077
The extent of increasing anthropogenic impacts on large marine vertebrates partly depends on the animals’ movement patterns. Effective conservation requires identification of the key drivers of movement including intrinsic properties and extrinsic constraints associated with the dynamic nature of the environments the animals inhabit. However, the relative importance of intrinsic...
ModelArchiver—A program for facilitating the creation of groundwater model archives
Richard B. Winston
2018, Open-File Report 2017-1149
ModelArchiver is a program designed to facilitate the creation of groundwater model archives that meet the requirements of the U.S. Geological Survey (USGS) policy (Office of Groundwater Technical Memorandum 2016.02, https://water.usgs.gov/admin/memo/GW/gw2016.02.pdf, https://water.usgs.gov/ogw/policy/gw-model/). ModelArchiver version 1.0 leads the user step-by-step through the process of creating a USGS...
Environmental, anthropogenic, and dietary influences on fine-scale movement patterns of Atlantic salmon through challenging waters
Andrew B. Harbicht, Theodore R. Castro-Santos, Dimitry Gorsky, D.M. Hand, D.J. Fraser, W.R. Ardren
2018, Canadian Journal of Fisheries and Aquatic Sciences (75) 2198-2210
Partial barriers to migration can affect migratory fish population dynamics and be influenced by many biotic, abiotic, and anthropogenic factors, including nutritional deficiencies. We investigated how such variables (including a thiamine deficiency) impact fine-scale movement of landlocked Atlantic salmon (Salmo salar) by treating returning spawners with thiamine and observing their...
Monitoring Least Bitterns (Ixobrychis exilis) in Vermont: Detection probability and occupancy modeling
Aswini Cherukuri, Allan Strong, Therese M. Donovan
2018, Northeastern Naturalist (25) 56-71
Ixobrychus exillis (Least Bittern) is listed as a species of high concern in the North American Waterbird Conservation Plan and is a US Fish and Wildlife Service migratory bird species of conservation concern in the Northeast. Little is known about the population of Least Bitterns in the Northeast because of their...
Drivers of variability in public‐supply water use across the contiguous United States
Scott C. Worland, Scott Steinschneider, George M. Hornberger
2018, Water Resources Research (54) 1868-1889
This study explores the relationship between municipal water use and an array of climate, economic, behavioral, and policy variables across the contiguous U.S. The relationship is explored using Bayesian‐hierarchical regression models for over 2,500 counties, 18 covariates, and three higher‐level grouping variables. Additionally, a second analysis is included for 83...
Technical note: False low turbidity readings from optical probes during high suspended-sediment concentrations
Nicholas Voichick, David J. Topping, Ronald E. Griffiths
2018, Hydrology and Earth System Sciences (22) 1767-1773
Turbidity, a measure of water clarity, is monitored for a variety of purposes including (1) to help determine whether water is safe to drink, (2) to establish background conditions of lakes and rivers and detect pollution caused by construction projects and stormwater discharge, (3) to study sediment transport in rivers and erosion in catchments, (4) to...
Evidence for regional nitrogen stress on chlorophyll a in lakes across large landscape and climate gradients
Christopher T. Filstrup, Tyler Wagner, Samantha K. Oliver, Craig A. Stow, Katherine E. Webster, Emily H. Stanley, John A. Downing
2018, Limnology and Oceanography (63) S324-S339
Nitrogen (N) and phosphorus (P) commonly stimulate phytoplankton production in lakes, but recent observations from lakes from an agricultural region suggest that nitrate may have a subsidy‐stress effect on chlorophyll a (Chl a). It is unclear, however, how generalizable this effect might be. Here, we analyzed a large water quality dataset of 2385...
Ecological drought: Accounting for the non-human impacts of water shortage in the Upper Missouri Headwaters Basin, Montana, USA
Jamie McEvoy, Deborah J. Bathke, Nina Burkardt, Amanda E. Cravens, Tonya Haigh, Kimberly R. Hall, Michael J. Hayes, Theresa Jedd, Marketa Podebradska, Elliot Wickham
2018, Resources (7) 1-16
Water laws and drought plans are used to prioritize and allocate scarce water resources. Both have historically been human-centric, failing to account for non-human water needs. In this paper, we examine the development of instream flow legislation and the evolution of drought planning to highlight the growing concern for the...
