Assessing accuracy and precision for field and laboratory data: a perspective in ecosystem restoration
Martin A. Stapanian, Timothy E Lewis, Craig J. Palmer, Molly Middlebrook Amos
2016, Restoration Ecology (24) 18-26
Unlike most laboratory studies, rigorous quality assurance/quality control (QA/QC) procedures may be lacking in ecosystem restoration (“ecorestoration”) projects, despite legislative mandates in the United States. This is due, in part, to ecorestoration specialists making the false assumption that some types of data (e.g. discrete variables such as species identification and...
An evaluation of unsupervised and supervised learning algorithms for clustering landscape types in the United States
Jochen Wendel, Barbara P. Buttenfield, Larry V. Stanislawski
2016, Cartography and Geographic Information Science (43) 233-249
Knowledge of landscape type can inform cartographic generalization of hydrographic features, because landscape characteristics provide an important geographic context that affects variation in channel geometry, flow pattern, and network configuration. Landscape types are characterized by expansive spatial gradients, lacking abrupt changes between adjacent classes; and as having a limited number...
Animal movement constraints improve resource selection inference in the presence of telemetry error
Brian M. Brost, Mevin Hooten, Ephraim M. Hanks, Robert J. Small
2016, Ecology (96) 2590-2597
Multiple factors complicate the analysis of animal telemetry location data. Recent advancements address issues such as temporal autocorrelation and telemetry measurement error, but additional challenges remain. Difficulties introduced by complicated error structures or barriers to animal movement can weaken inference. We propose an approach for obtaining resource selection inference from...
Blind identification of the Millikan Library from earthquake data considering soil–structure interaction
S. F. Ghahari, F. Abazarsa, O. Avci, Mehmet Çelebi, E. Taciroglu
2016, Structural Control and Health Monitoring (23) 684-706
The Robert A. Millikan Library is a reinforced concrete building with a basement level and nine stories above the ground. Located on the campus of California Institute of Technology (Caltech) in Pasadena California, it is among the most densely instrumented buildings in the U.S. From the early dates of its...
Seasonal temperature and precipitation regulate brook trout young-of-the-year abundance and population dynamics
Yoichiro Kanno, Kasey C. Pregler, Nathaniel P. Hitt, Benjamin Letcher, Daniel Hocking, John E. B. Wofford
2016, Freshwater Biology (61) 88-99
Abundance of the young‐of‐the‐year (YOY) fish can vary greatly among years and it may be driven by several key biological processes (i.e. adult spawning, egg survival and fry survival) that span several months. However, the relative influence of seasonal weather patterns on YOY abundance is poorly understood.We assessed the...
Bayesian data analysis in population ecology: motivations, methods, and benefits
Robert Dorazio
2016, Population Ecology (58) 31-44
During the 20th century ecologists largely relied on the frequentist system of inference for the analysis of their data. However, in the past few decades ecologists have become increasingly interested in the use of Bayesian methods of data analysis. In this article I provide guidance to ecologists who would like...
Multi‐season occupancy models identify biotic and abiotic factors influencing a recovering Arctic Peregrine Falcon Falco peregrinus tundrius population
Jason E. Bruggeman, Ted Swem, David E. Andersen, Patricia L. Kennedy, Debora Nigro
2016, Ibis (158) 61-74
Critical information for evaluating the effectiveness of management strategies for species of concern include distinguishing seldom occupied (or low‐quality) habitat from habitat that is frequently occupied and thus contributes substantially to population trends. Using multi‐season models that account for imperfect detection and a long‐term (1981–2002) dataset on migratory Arctic Peregrine...
Assessing the robustness of quantitative fatty acid signature analysis to assumption violations
Jeffrey F. Bromaghin, Suzanne M. Budge, Gregory W. Thiemann, Karyn D. Rode
2016, Methods in Ecology and Evolution (7) 51-59
Knowledge of animal diets can provide important insights into life history and ecology, relationships among species in a community and potential response to ecosystem change or perturbation. Quantitative fatty acid signature analysis (QFASA) is a method of estimating diets from data on the composition, or signature, of fatty acids stored...
Detecting significant change in stream benthic macroinvertebrate communities in wilderness areas
Alexander M. Milner, Andrea Woodward, Jerome E. Freilich, Robert W. Black, Vincent H. Resh
2016, Ecological Indicators (60) 524-537
A major challenge in the biological monitoring of stream ecosystems in protected wilderness areas is discerning whether temporal changes in community structure are significantly outside of a reference condition that represents natural or acceptable annual variation in population cycles. Otherwise sites could erroneously be classified as impaired. Long-term datasets...
Chemical considerations for an updated National assessment of brackish groundwater resources
Peter B. McMahon, John Karl Bohlke, Katharine Dahm, David L. Parkhurst, David W. Anning, Jennifer S. Stanton
2016, Groundwater (54) 464-475
Brackish groundwater (BGW) is increasingly used for water supplies where fresh water is scarce, but the distribution and availability of such resources have not been characterized at the national scale in the United States since the 1960s. Apart from its distribution and accessibility, BGW usability is a function of the...
The Upper Mississippi River floodscape: spatial patterns of flood inundation and associated plant community distributions
Nathan R. De Jager, Jason J. Rohweder, Yao Yin, Erin E. Hoy
2016, Applied Vegetation Science (19) 164-172
Questions How is the distribution of different plant communities associated with patterns of flood inundation across a large floodplain landscape? Location Thirty-eight thousand nine hundred and seventy hectare of floodplain, spanning 320 km of the Upper Mississippi River (UMR). Methods High-resolution elevation data (Lidar) and 30 yr of daily river...
Anticipating environmental and environmental-health implications of extreme storms: ARkStorm scenario
Geoffrey S. Plumlee, Charles N. Alpers, Suzette A. Morman, Carma A. San Juan
2016, Natural Hazards Review (17)
The ARkStorm Scenario predicts that a prolonged winter storm event across California would cause extreme precipitation, flooding, winds, physical damages, and economic impacts. This study uses a literature review and geographic information system-based analysis of national and state databases to infer how and where ARkStorm could cause environmental damages, release...
Imaging pathways in fractured rock using three-dimensional electrical resistivity tomography
Judith Robinson, Lee Slater, Timothy B. Johnson, Allen M. Shapiro, Claire R. Tiedeman, Dimitrios Ntlargiannis, Carole D. Johnson, Frederick D. Day-Lewis, Pierre Lacombe, Thomas E. Imbrigiotta, John W. Lane Jr.
2016, Groundwater (54) 186-201
Major challenges exist in delineating bedrock fracture zones because these cause abrupt changes in geological and hydrogeological properties over small distances. Borehole observations cannot sufficiently capture heterogeneity in these systems. Geophysical techniques offer the potential to image properties and processes in between boreholes. We used three-dimensional cross borehole electrical resistivity...
Movement analysis of free-grazing domestic ducks in Poyang Lake, China: A disease connection
Diann J. Prosser, Eric C. Palm, John Y. Takekawa, Delong Zhao, Xiangming Xiao, Peng Li, Ying Liu, Scott H. Newman
2016, International Journal of Geographical Information Science (30) 869-880
Previous work suggests domestic poultry are important contributors to the emergence and transmission of highly pathogenic avian influenza throughout Asia. In Poyang Lake, China, domestic duck production cycles are synchronized with arrival and departure of thousands of migratory wild birds in the area. During these periods, high densities of juvenile...
Geostatistical borehole image-based mapping of karst-carbonate aquifer pores
Michael Sukop, Kevin J. Cunningham
2016, Groundwater (54) 202-213
Quantification of the character and spatial distribution of porosity in carbonate aquifers is important as input into computer models used in the calculation of intrinsic permeability and for next-generation, high-resolution groundwater flow simulations. Digital, optical, borehole-wall image data from three closely spaced boreholes in the karst-carbonate Biscayne aquifer in southeastern...
Marine geophysical data collected in a shallow back-barrier estuary, Barnegat Bay, New Jersey
Brian D. Andrews, Jennifer L. Miselis, William W. Danforth, Barry J. Irwin, Charles R. Worley, Emile M. Bergeron, Dann S. Blackwood
2016, Data Series 937
In 2011, the U.S. Geological Survey, in cooperation with the New Jersey Department of Environmental Protection, began a multidisciplinary research project to better understand the water quality in Barnegat Bay, New Jersey. This back-barrier estuary is experiencing degraded water quality, algal blooms, loss of seagrass, and increases in oxygen stress,...
Morphological identification and COI barcodes of adult flies help determine species identities of chironomid larvae (Diptera, Chironomidae)
Andrew Joseph Failla, Adrian Amelio Vasquez, Patrick L. Hudson, Masanori Fujimoto, Jeffrey L. Ram
2016, Bulletin of Entomological Research (106) 34-46
Establishing reliable methods for the identification of benthic chironomid communities is important due to their significant contribution to biomass, ecology and the aquatic food web. Immature larval specimens are more difficult to identify to species level by traditional morphological methods than their fully developed adult counterparts, and few keys are...
Modeling habitat connectivity to inform reintroductions: a case study with the Chiricahua Leopard Frog
Christopher J. Jarchow, Blake R. Hossack, Brent H. Sigafus, Cecil R. Schwalbe, Erin L. Muths
2016, Journal of Herpetology (50) 63-69
Managing species with intensive tools such as reintroduction may focus on single sites or entire landscapes. For vagile species, long-term persistence will require colonization and establishment in neighboring habitats. Therefore, both suitable colonization sites and suitable dispersal corridors between sites are required. Assessment of landscapes for both requirements can contribute...
Hurricane Sandy beach response and recovery at Fire Island, New York: Shoreline and beach profile data, October 2012 to October 2014
Rachel E. Hehre Henderson, Cheryl J. Hapke, Owen T. Brenner, Billy J. Reynolds
2016, Data Series 931
In response to the forecasted impact of Hurricane Sandy, which made landfall on October 29, 2012, the U.S. Geological Survey (USGS) began a substantial data-collection effort to assess the morphological impacts to the beach and dune system at Fire Island, New York. Global positioning system (GPS) field surveys of the...
Variations in water temperature and implications for trout populations in the Upper Schoharie Creek and West Kill, New York, USA
Scott D. George, Barry P. Baldigo, Martyn J. Smith, Donald M Mckeown, Jason Faulringer
2016, Journal of Freshwater Ecology (31) 93-108
Water temperature is a key component of aquatic ecosystems because it plays a pivotal role in determining the suitability of stream and river habitat to most freshwater fish species. Continuous temperature loggers and airborne thermal infrared (TIR) remote sensing were used to assess temporal and spatial temperature patterns on the...
Habitat suitability criteria via parametric distributions: estimation, model selection and uncertainty
Nicholas A. Som, Damon H. Goodman, Russell W. Perry, Thomas B. Hardy
2016, River Research and Applications (32) 1128-1137
Previous methods for constructing univariate habitat suitability criteria (HSC) curves have ranged from professional judgement to kernel-smoothed density functions or combinations thereof. We present a new method of generating HSC curves that applies probability density functions as the mathematical representation of the curves. Compared with previous approaches, benefits of our...
Synergistic and singular effects of river discharge and lunar illumination on dam passage of upstream migrant yellow-phase American eels
Stuart A. Welsh, Joni L. Aldinger, Melissa A. Braham, Jennifer L. Zimmerman
2016, ICES Journal of Marine Science (73) 33-42
Monitoring of dam passage can be useful for management and conservation assessments of American eel, particularly if passage counts can be examined over multiple years. During a 7-year study (2007–2013) of upstream migration of American eels within the lower Shenandoah River (Potomac River drainage), we counted and measured...
Collaborative Studies for Mercury Characterization in Coal and Coal Combustion Products, Republic of South Africa
Allan Kolker, Constance L. Senior, Chris van Alphen
2016, Open-File Report 2014-1153
Mercury (Hg) analyses were obtained for 42 samples of feed coal provided by Eskom, the national electric utility of South Africa, representing all 13 coal-fired power stations operated by Eskom in South Africa. This sampling includes results for three older power stations returned to service starting in the late 2000s....
The 3D Elevation Program: summary for Hawaii
William J. Carswell Jr.
2016, Fact Sheet 2014-3079
Elevation data are essential to a broad range of applications, including forest resources management, wildlife and habitat management, national security, recreation, and many others. For the State of Hawaii, elevation data are critical for infrastructure and construction management, flood risk management, geologic resource assessment and hazard mitigation, natural resources conservation,...
A hierarchical community occurrence model for North Carolina stream fish
S.R. Midway, Tyler Wagner, B.H. Tracy
2016, Transactions of the American Fisheries Society (143) 1348-1357
The southeastern USA is home to one of the richest—and most imperiled and threatened—freshwater fish assemblages in North America. For many of these rare and threatened species, conservation efforts are often limited by a lack of data. Drawing on a unique and extensive data set spanning over 20 years, we modeled...