Changes in seasonal climate outpace compensatory density-dependence in eastern brook trout
Ronald D. Bassar, Benjamin H. Letcher, Keith H. Nislow, Andrew R. Whiteley
2016, Global Change Biology (22) 577-593
Understanding how multiple extrinsic (density-independent) factors and intrinsic (density-dependent) mechanisms influence population dynamics has become increasingly urgent in the face of rapidly changing climates. It is particularly unclear how multiple extrinsic factors with contrasting effects among seasons are related to declines in population numbers and changes in mean body size...
geoknife: Reproducible web-processing of large gridded datasets
Jordan S. Read, Jordan I. Walker, Alison P. Appling, David L. Blodgett, Emily K. Read, Luke A. Winslow
2016, Ecography (39) 354-360
Geoprocessing of large gridded data according to overlap with irregular landscape features is common to many large-scale ecological analyses. The geoknife R package was created to facilitate reproducible analyses of gridded datasets found on the U.S. Geological Survey Geo Data Portal web application or elsewhere, using a web-enabled workflow that...
Sustainable groundwater management in California
Steven P. Phillips, Laurel Lynn Rogers, Claudia C. Faunt
2016, Fact Sheet 2015-3084
The U.S. Geological Survey (USGS) uses data collection, modeling tools, and scientific analysis to help water managers plan for, and assess, hydrologic issues that can cause “undesirable results” associated with groundwater use. This information helps managers understand trends and investigate and predict effects of different groundwater-management strategies....
Conservation genomics reveals multiple evolutionary units within Bell’s Vireo (Vireo bellii).
Luke B. Klicka, Barbara E. Kus, Pascal O. Title, Kevin J. Burns
2016, Conservation Genetics (17) 455-471
The Bell’s Vireo (Vireo bellii) is a widespread North American species of bird that has declined since the mid-1960s primarily due to habitat modification. Throughout its range, Bell’s Vireo populations are regulated under varying degrees of protection; however, the species has never been characterized genetically. Therefore, the current...
Urban effects on regional climate: a case study in the Phoenix and Tucson ‘sun’ corridor
Zhao Yang, Francina Dominguez, Hoshin Gupta, Xubin Zeng, Laura M. Norman
2016, Earth Interactions (20)
Land use and land cover change (LULCC) due to urban expansion alter the surface albedo, heat capacity, and thermal conductivity of the surface. Consequently, the energy balance in urban regions is different from that of natural surfaces. To evaluate the changes in regional climate that could arise due to projected...
Detection rates of geckos in visual surveys: Turning confounding variables into useful knowledge
Bjorn Lardner, Gordon H. Rodda, Amy A. Yackel Adams, Julie A. Savidge, Robert N. Reed
2016, Journal of Herpetology (49) 522-532
Transect surveys without some means of estimating detection probabilities generate population size indices prone to bias because survey conditions differ in time and space. Knowing what causes such bias can help guide the collection of relevant survey covariates, correct the survey data, anticipate situations where bias might be unacceptably large,...
A simple web-based tool to compare freshwater fish data collected using AFS standard methods
Scott A. Bonar, Norman Mercado-Silva, Matt Rahr, Yuta T. Torrey, Averill Cate Jr.
2016, Fisheries (40) 580-589
The American Fisheries Society (AFS) recently published Standard Methods for Sampling North American Freshwater Fishes. Enlisting the expertise of 284 scientists from 107 organizations throughout Canada, Mexico, and the United States, this text was developed to facilitate comparisons of fish data across regions or time. Here we describe a user-friendly web tool...
A framework to assess biogeochemical response to ecosystem disturbance using nutrient partitioning ratios
J. Marty Kranabetter, Kendra K. McLauchlan, Sara K. Enders, Jennifer M. Fraterrigo, Philip E. Higuera, Jesse L. Morris, Edward B. Rastetter, Rebecca Barnes, Brian Buma, Daniel G. Gavin, Laci M. Gerhart, Lindsey Gillson, Peter Hietz, Michelle C. Mack, Brenden McNeil, Steven S. Perakis
2016, Ecosystems (19) 387-395
Disturbances affect almost all terrestrial ecosystems, but it has been difficult to identify general principles regarding these influences. To improve our understanding of the long-term consequences of disturbance on terrestrial ecosystems, we present a conceptual framework that analyzes disturbances by their biogeochemical impacts. We posit that the ratio of soil...
Complex mixtures, complex responses: Assessing pharmaceutical mixtures using field and laboratory approaches
Heiko L. Schoenfuss, Edward T. Furlong, Patrick J. Phillips, Tia-Marie Scott, Dana W. Kolpin, Marina Cetkovic-Cvrlje, Kelsey E. Lesteberg, Daniel C. Rearick
2016, Environmental Toxicology and Chemistry (35) 953-965
Pharmaceuticals are present in low concentrations (<100 ng/L) in most municipal wastewater effluents but may be elevated locally because of factors such as input from pharmaceutical formulation facilities. Using existing concentration data, the authors assessed pharmaceuticals in laboratory exposures of fathead minnows (Pimephales promelas) and added environmental complexity through effluent exposures....
Effect of antecedent-hydrological conditions on rainfall triggering of debris flows in ash-fall pyroclastic mantled slopes of Campania (southern Italy)
E. Napolitano, F Fusco, Rex L. Baum, Jonathan W. Godt, P. De Vita
2016, Landslides (13) 967-983
Mountainous areas surrounding the Campanian Plain and the Somma-Vesuvius volcano (southern Italy) are among the most risky areas of Italy due to the repeated occurrence of rainfallinduced debris flows along ash-fall pyroclastic soil-mantled slopes. In this geomorphological framework, rainfall patterns, hydrological processes taking place within multi-layered ash-fall pyroclastic deposits and...
Flexible risk metrics for identifying and monitoring conservation-priority species
Jessica C. Stanton, Brice X. Semmens, Patrick C. McKann, Tom Will, Wayne E. Thogmartin
2016, Ecological Indicators (61) 683-692
Region-specific conservation programs should have objective, reliable metrics for species prioritization and progress evaluation that are customizable to the goals of a program, easy to comprehend and communicate, and standardized across time. Regional programs may have vastly different goals, spatial coverage, or management agendas, and one-size-fits-all schemes may not always...
Density dependence, whitebark pine, and vital rates of grizzly bears
Frank T. van Manen, Mark A. Haroldson, Daniel D. Bjornlie, Michael R. Ebinger, Daniel J. Thompson, Cecily M. Costello, Gary C. White
2016, Journal of Wildlife Management (80) 300-313
Understanding factors influencing changes in population trajectory is important for effective wildlife management, particularly for populations of conservation concern. Annual population growth of the grizzly bear (Ursus arctos) population in the Greater Yellowstone Ecosystem, USA has slowed from 4.2–7.6% during 1983–2001 to 0.3–2.2% during 2002–2011. Substantial changes in availability of...
Profiles of reservoir properties of oil-bearing plays for selected petroleum provinces in the United States
Philip A. Freeman, Emil D. Attanasi
2016, Open-File Report 2015-1195
Profiles of reservoir properties of oil-bearing plays for selected petroleum provinces in the United States were developed to characterize the database to be used for a potential assessment by the U.S. Geological Survey (USGS) of oil that would be technically recoverable by the application of enhanced oil recovery methods using...
A quantitative framework for estimating risk of collision between marine mammals and boats
Julien Martin, Quentin Sabatier, Timothy A. Gowan, Christophe Giraud, Eliezer Gurarie, Scott Calleson, Joel G. Ortega-Ortiz, Charles J. Deutsch, Athena Rycyk, Stacie M. Koslovsky
2016, Methods in Ecology and Evolution (7) 42-50
Speed regulations of watercraft in protected areas are designed to reduce lethal collisions with wildlife but can have economic consequences. We present a quantitative framework for investigating the risk of deadly collisions between boats and wildlife. We apply encounter rate theory to demonstrate how marine mammal-boat encounter rate can be used...
Fluid spatial dynamics of West Nile virus in the USA: Rapid spread in a permissive host environment
Francesca Di Giallonardo, Jemma L. Geoghegan, Douglas E. Docherty, Robert G. McLean, Michael C. Zody, James Qu, Xiao Yang, Bruce W. Birren, Christine M. Malboeuf, R. Newman, S. Ip, Edward C. Holmes
2016, Journal of Virology (90) 862-872
The introduction of West Nile virus (WNV) into North America in 1999 is a classical example of viral emergence in a new environment, with its subsequent dispersion across the continent having a major impact on local bird populations. Despite the importance of this epizootic, the pattern, dynamics and determinants of...
Prototypic automated continuous recreational water quality monitoring of nine Chicago beaches
Dawn Shively, Meredith Nevers, Cathy Breitenbach, Mantha S. Phanikumar, Kasia Przybyla-Kelly, Ashley M. Spoljaric, Richard L. Whitman
2016, Journal of Environmental Management (166) 285-293
Predictive empirical modeling is used in many locations worldwide as a rapid, alternative recreational water quality management tool to eliminate delayed notifications associated with traditional fecal indicator bacteria (FIB) culturing (referred to as the persistence model, PM) and to prevent errors in releasing swimming advisories. The goal of this study...
Integrating spatially explicit indices of abundance and habitat quality: an applied example for greater sage-grouse management
Peter S. Coates, Michael L. Casazza, Mark A. Ricca, Brianne E. Brussee, Erik J. Blomberg, K. Benjamin Gustafson, Cory T. Overton, Dawn M. Davis, Lara E. Niell, Shawn P. Espinosa, Scott C. Gardner, David J. Delehanty
2016, Journal of Applied Ecology (53) 83-95
Predictive species distributional models are a cornerstone of wildlife conservation planning. Constructing such models requires robust underpinning science that integrates formerly disparate data types to achieve effective species management. Greater sage-grouse Centrocercus urophasianus, hereafter “sage-grouse” populations are declining throughout sagebrush-steppe ecosystems in North America, particularly within the Great Basin, which...
Engagement with indigenous peoples and honoring traditional knowledge systems
Julie Maldonado, Bull Bennett, Karletta Chief, Patricia Cochran, Karen Cozetto, Bob Gough, Margaret M. Hiza-Redsteer, Kathy Lynn, Nancy Maynard, Garrit Voggesser
2016, Climatic Change (135) 111-126
The organizers of the 2014 US National Climate Assessment (NCA) made a concerted effort to reach out to and collaborate with Indigenous peoples, resulting in the most comprehensive information to date on climate change impacts to Indigenous peoples in a US national assessment. Yet, there is still much...
A dynamic population model to investigate effects of climate and climate-independent factors on the lifecycle of the tick Amblyomma americanum (Acari: Ixodidae)
Antoinette Ludwig, Howard S. Ginsberg, Graham J. Hickling, Nicholas H. Ogden
2016, Journal of Medical Entomology (53) 99-115
The lone star tick, Amblyomma americanum, is a disease vector of significance for human and animal health throughout much of the eastern United States. To model the potential effects of climate change on this tick, a better understanding is needed of the relative roles of temperature-dependent and temperature-independent (day-length-dependent behavioral...
Population trends, bend use relative to available habitat and within-river-bend habitat use of eight indicator species of Missouri and Lower Kansas River benthic fishes: 15 years after baseline assessment
Mark L. Wildhaber, Wen-Hsi Yang, Ali Arab
2016, River Research and Applications (32) 36-65
A baseline assessment of the Missouri River fish community and species-specific habitat use patterns conducted from 1996 to 1998 provided the first comprehensive analysis of Missouri River benthic fish population trends and habitat use in the Missouri and Lower Yellowstone rivers, exclusive of reservoirs, and provided the foundation for the...
Mycobacterial infection in Northern snakehead (Channa argus) from the Potomac River catchment
Christine L. Densmore, Luke R. Iwanowicz, Anne Henderson, Deborah D. Iwanowicz, J.S. Odenkirk
2016, Journal of Fish Diseases (39) 771-775
The Northern snakehead, Channa argus (Cantor), is a non-native predatory fish that has become established regionally in some temperate freshwater habitats within the United States. Over the past decade, Northern snakehead populations have developed within aquatic ecosystems throughout the eastern USA, including the Potomac River system within Virginia, Maryland and Washington, D.C....
Relating mesocarnivore relative abundance to anthropogenic land-use with a hierarchical spatial count model
Shawn M. Crimmins, Liza R. Walleser, Dan R. Hertel, Patrick C. McKann, Jason J. Rohweder, Wayne E. Thogmartin
2016, Ecography (39) 524-532
There is growing need to develop models of spatial patterns in animal abundance, yet comparatively few examples of such models exist. This is especially true in situations where the abundance of one species may inhibit that of another, such as the intensively-farmed landscape of the Prairie Pothole Region (PPR) of...
Environmental controls on spatial patterns in the long-term persistence of giant kelp in central California
Mary Alida Young, Kyle C. Cavanaugh, Tom W. Bell, Peter T. Raimondi, Christopher A. Edwards, Patrick T. Drake, Li H. Erikson, Curt D. Storlazzi
2016, Ecology (86) 45-60
As marine management is moving towards the practice of protecting static areas, it is 44 important to make sure protected areas capture and protect persistent populations. Rocky reefs in 45 many temperate areas worldwide serve as habitat for canopy forming macroalgae and these 46 structure forming species of kelps (order...
The Iquique earthquake sequence of April 2014: Bayesian modeling accounting for prediction uncertainty
Zacharie Duputel, Junle Jiang, Romain Jolivet, Mark Simons, Luis Rivera, Jean-Paul Ampuero, Bryan Riel, Susan E Owen, Angelyn W Moore, Sergey V Samsonov, Francisco Ortega Culaciati, Sarah E. Minson
2016, Geophysical Research Letters (42) 7949-7957
The subduction zone in northern Chile is a well-identified seismic gap that last ruptured in 1877. On 1 April 2014, this region was struck by a large earthquake following a two week long series of foreshocks. This study combines a wide range of observations, including geodetic, tsunami, and...
Assessing accuracy and precision for field and laboratory data: a perspective in ecosystem restoration
Martin A. Stapanian, Timothy E Lewis, Craig J. Palmer, Molly Middlebrook Amos
2016, Restoration Ecology (24) 18-26
Unlike most laboratory studies, rigorous quality assurance/quality control (QA/QC) procedures may be lacking in ecosystem restoration (“ecorestoration”) projects, despite legislative mandates in the United States. This is due, in part, to ecorestoration specialists making the false assumption that some types of data (e.g. discrete variables such as species identification and...