Thresholds for protecting Pacific Northwest ecosystems from atmospheric deposition of nitrogen: state of knowledge report
Tonnie Cummings, Tamara Blett, Ellen Porter, Linda Geiser, Rick Graw, Jill McMurray, Steven S. Perakis, Regina Rochefort
2014, Natural Resource Report NPS/PWRO/NRR--2014/823
The National Park Service and U.S. Forest Service manage areas in the states of Idaho, Oregon, and Washington – collectively referred to in this report as the Pacific Northwest - that contain significant natural resources and provide many recreational opportunities. The agencies are mandated to protect the air quality...
Barcodes are a useful tool for labeling and tracking ecological samples
Adam J. Copp, Theodore A. Kennedy, Jeffrey D. Muehlbauer
2014, Bulletin of the Ecological Society of America (95) 293-300
Barcodes are used to label and track just about everything these days. Look around your office, in your medicine cabinet, at the package you just received in the mail, or on the shelves of any shop in town, and you will immediately grasp the ubiquity of their use. Interestingly, railroads...
Importance of biogeomorphic and spatial properties in assessing a tidal salt marsh vulnerability to sea-level rise
Karen M. Thorne, Deborah L. Elliott-Fisk, Glenn D. Wylie, William M. Perry, John Y. Takekawa
2014, Estuaries and Coasts (37) 941-951
We evaluated the biogeomorphic processes of a large (309 ha) tidal salt marsh and examined factors that influence its ability to keep pace with relative sea-level rise (SLR). Detailed elevation data from 1995 and 2008 were compared with digital elevation models (DEMs) to assess marsh surface elevation change during this...
Methylmercury-induced changes in gene transcription associated with neuroendocrine disruption in largemouth bass (Micropterus salmoides)
Catherine A. Richter, Christopher J. Martyniuk, Mandy L. Annis, William G. Brumbaugh, Lia C. Chasar, Nancy D. Denslow, Donald E. Tillitt
2014, General and Comparative Endocrinology (203) 215-224
Methyl-mercury (MeHg) is a potent neuroendocrine disruptor that impairs reproductive processes in fish. The objectives of this study were to (1) characterize transcriptomic changes induced by MeHg exposure in the female largemouth bass (LMB) hypothalamus under controlled laboratory conditions, (2) investigate the health and reproductive impacts of MeHg exposure on...
Reply to Efford on ‘Integrating resource selection information with spatial capture-recapture’
J. Andrew Royle, Richard Chandler, Catherine C. Sun, Angela K. Fuller
2014, Methods in Ecology and Evolution (5) 603-605
1. We proposed (Methods in Ecology and Evolution, 2013, 4) a model for combining telemetry data with spatial capture–recapture (SCR) data that was vigorously criticized by Efford (Methods in Ecology and Evolution, 2014, 000, 000). Efford's main claim was that our encounter probability model was incorrect, and therefore our R...
Sediment concentrations, flow conditions, and downstream evolution of two turbidity currents, Monterey Canyon, USA
Jingping Xu, Octavio E. Sequeiros, Marlene A. Noble
2014, Deep-Sea Research Part I: Oceanographic Research Papers (89) 11-34
The capacity of turbidity currents to carry sand and coarser sediment from shallow to deep regions in the submarine environment has attracted the attention of researchers from different disciplines. Yet not only are field measurements of oceanic turbidity currents a rare achievement, but also the data that have been collected...
Pyroclast textural variation as an indicator of eruption column steadiness in andesitic Plinian eruptions at Mt. Ruapehu
Natalia Pardo, Shane J. Cronin, Heather M. Wright, C. Ian Schipper, Ian Smith, Bob Stewart
2014, Bulletin of Volcanology (76)
Between 27 and 11 cal. ka BP, a transition is observed in Plinian eruptions at Mt. Ruapehu, indicating evolution from non-collapsing (steady and oscillatory) eruption columns to partially collapsing columns (both wet and dry). To determine the causes of these variations over this eruptive interval, we examined lapilli fall deposits...
Geologic history of Siletzia, a large igneous province in the Oregon and Washington Coast Range: Correlation to the geomagnetic polarity time scale and implications for a long-lived Yellowstone hotspot
Ray Wells, David Bukry, Richard Friedman, Douglas Pyle, Robert Duncan, Peter J. Haeussler, Joe Wooden
2014, Geosphere (10) 692-719
Siletzia is a basaltic Paleocene and Eocene large igneous province in coastal Oregon, Washington, and southern Vancouver Island that was accreted to North America in the early Eocene. New U-Pb magmatic, detrital zircon, and 40Ar/39Ar ages constrained by detailed field mapping, global nannoplankton zones, and magnetic polarities allow correlation of...
Regional mapping of hydrothermally altered igneous rocks along the Urumieh-Dokhtar, Chagai, and Alborz Belts of western Asia using Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) data and Interactive Data Language (IDL) logical operators: a tool for porphyry copper exploration and assessment
John L. Mars
M. L. Zientek, J. M. Hammarstrom, K. M. Johnson, F. W. Pierce, editor(s)
2014, Scientific Investigations Report 2010-5090-O
Regional maps of phyllic and argillic hydrothermal alteration were compiled using Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) data and logical operator algorithms. The area mapped extends from northwestern Iran to southeastern Pakistan and includes volcanic and magmatic arcs that make up the Urumieh-Dokhtar volcanic belt (UDVB), the Chagai...
The economics of roadside bear viewing
Leslie Richardson, Tatjana Rosen, Kerry Gunther, Chuck Schwartz
2014, Journal of Environmental Management (140) 102-110
Viewing bears along roadside habitats is a popular recreational activity in certain national parks throughout the United States. However, safely managing visitors during traffic jams that result from this activity often requires the use of limited park resources. Using unique visitor survey data, this study quantifies economic values associated with...
Development of eighteen microsatellite loci in walleye (Sander vitreus)
D. Katharine Coykendall, Cheryl L. Morrison, Wendylee Stott, Marcus J. Springmann
2014, Conservation Genetics Resources (6) 1019-1021
A suite of tri- and tetra-nucleotide microsatellite loci were developed for walleye (Sander vitreus) from 454 pyrosequencing data. Eighteen of the 50 primer sets tested amplified consistently in 35 walleye from two lakes on Isle Royale, Lake Superior: Chickenbone Lake and Whittlesey Lake. The loci displayed moderate levels...
Experimental design and quality assurance: in situ fluorescence instrumentation
Robyn N. Conmy, Carlos E. Del Castillo, Bryan D. Downing, Robert F. Chen
2014, Book chapter, Aquatic organic matter fluorescence
Both instrument design and capabilities of fluorescence spectroscopy have greatly advanced over the last several decades. Advancements include solid-state excitation sources, integration of fiber optic technology, highly sensitive multichannel detectors, rapid-scan monochromators, sensitive spectral correction techniques, and improve data manipulation software (Christian et al., 1981, Lochmuller and Saavedra, 1986; Cabniss...
Monitoring rationale, strategy, issues, and methods: UMRR-EMP LTRMP fish component
Brian S. Ickes, Jennifer S. Sauer, James T. Rogala
2014, Report
The Long Term Resource Monitoring Program (LTRMP), an element of the multiagency partnership Upper Mississippi River Restoration-Environmental Management Program, has been monitoring fishes in the Upper Mississippi River System (UMRS) for over two decades, using scientific and highly standardized methods. Today, the LTRMP’s data assets represent one of the world’s...
Statistical analysis of the water-quality monitoring program, Upper Klamath Lake, Oregon, and optimization of the program for 2013 and beyond
Sara L. Caldwell Eldridge, Susan A. Wherry, Tamara M. Wood
2014, Open-File Report 2014-1009
Upper Klamath Lake in south-central Oregon has become increasingly eutrophic over the past century and now experiences seasonal cyanobacteria-dominated and potentially toxic phytoplankton blooms. Growth and decline of these blooms create poor water-quality conditions that can be detrimental to fish, including two resident endangered sucker species. Upper Klamath Lake is...
Effects of environmental amenities and locational disamenities on home values in the Santa Cruz watershed: a hedonic analysis using census data
Gaurav Arora, George Frisvold, Laura Norman
2014, Book, Santa Cruz River Researchers� Day 2012
For this study, we used the hedonic pricing method to measure the effects of natural amenities on home prices in the U.S-side of the Santa Cruz Watershed. We employed multivariate spatial regression techniques to estimate how difference factors affect median home values in 613 census block groups of the...
U.S. Geological Survey's ShakeCast: A cloud-based future
David J. Wald, Kuo-Wan Lin, Loren Turner, Nebi Bekiri
2014, Conference Paper
When an earthquake occurs, the U. S. Geological Survey (USGS) ShakeMap portrays the extent of potentially damaging shaking. In turn, the ShakeCast system, a freely-available, post-earthquake situational awareness application, automatically retrieves earthquake shaking data from ShakeMap, compares intensity measures against users’ facilities, sends notifications of potential damage to responsible parties,...
Oxygen isotope systematics in the aragonite-CO2-H2O-NaCl system up to 0.7 mol/kg ionic strength at 25 °C
Sang-Tae Kim, Christa Klein Gebbinck, Alfonso Mucci, Tyler B. Coplen
2014, Geochimica et Cosmochimica Acta (137) 147-158
To investigate the oxygen isotope systematics in the aragonite-CO2-H2O-NaCl system, witherite (BaCO3) was precipitated quasi-instantaneously and quantitatively from Na-Cl-Ba-CO2 solutions of seawater-like ionic strength (I = 0.7 mol/kg) at two pH values (~7.9 and ~10.6) at 25 °C. The oxygen isotope composition of the witherite and the dissolved inorganic carbon...
Avian response to timber harvesting applied experimentally to manage Cerulean Warbler breeding populations
James Sheehan, Petra Bohall Wood, David A. Buehler, Patrick D. Keyser, Jeffrey L. Larkin, Amanda D. Rodewald, T. Bently Wigley, Than J. Boves, Gregory A. George, Marja H. Bakermans, Tiffany A. Beachy, Andrea Evans, Molly E. McDermott, Felicity L. Newell, Kelly A. Perkins, Matthew White
2014, Forest Ecology and Management (321) 5-18
Timber harvesting has been proposed as a management tool to enhance breeding habitat for the Cerulean Warbler (Setophaga cerulea), a declining Neotropical–Nearctic migratory songbird that nests in the canopy of mature eastern deciduous forests. To evaluate how this single-species management focus might fit within an ecologically based management approach for...
Low-frequency earthquakes reveal punctuated slow slip on the deep extent of the Alpine Fault, New Zealand
Calum J. Chamberlain, David R. Shelly, John Townend, T.A. Stern
2014, Geochemistry, Geophysics, Geosystems (15) 2984-2999
We present the first evidence of low-frequency earthquakes (LFEs) associated with the deep extension of the transpressional Alpine Fault beneath the central Southern Alps of New Zealand. Our database comprises a temporally continuous 36 month-long catalog of 8760 LFEs within 14 families. To generate this catalog, we first identify 14...
Implications of next generation attenuation ground motion prediction equations for site coefficients used in earthquake resistant design
Roger D. Borcherdt
2014, Earthquake Engineering and Structural Dynamics (43) 1343-1360
Proposals are developed to update Tables 11.4-1 and 11.4-2 of Minimum Design Loads for Buildings and Other Structures published as American Society of Civil Engineers Structural Engineering Institute standard 7-10 (ASCE/SEI 7–10). The updates are mean next generation attenuation (NGA) site coefficients inferred directly from the four NGA...
Using passive integrated transponder (PIT) systems for terrestrial detection of blue-spotted salamanders (Ambystoma laterale) in situ
Kevin J. Ryan, Joseph D. Zydlewski, Aram J.K. Calhoun
2014, Herpetological Conservation and Biology (9) 97-105
Pure-diploid Blue-spotted Salamanders (Ambystoma laterale) are the smallest members of the family Ambystomatidae which makes tracking with radio-transmitters difficult because of small battery capacity. Passive integrated transponder (PIT) tags provide another tracking approach for small fossorial animals such as salamanders. We evaluated the use of portable PIT tag readers (PIT...
Slip rates and spatially variable creep on faults of the northern San Andreas system inferred through Bayesian inversion of Global Positioning System data
Jessica R. Murray, Sarah E. Minson, Jerry L. Svarc
2014, Journal of Geophysical Research B: Solid Earth (119) 6023-6047
Fault creep, depending on its rate and spatial extent, is thought to reduce earthquake hazard by releasing tectonic strain aseismically. We use Bayesian inversion and a newly expanded GPS data set to infer the deep slip rates below assigned locking depths on the San Andreas, Maacama, and Bartlett Springs Faults...
Scenario earthquake hazards for the Long Valley Caldera-Mono Lake area, east-central California (ver. 2.0, January 2018)
Rui Chen, David M. Branum, Chris J. Wills, David P. Hill
2014, Open-File Report 2014-1045
As part of the U.S. Geological Survey’s (USGS) multi-hazards project in the Long Valley Caldera-Mono Lake area, the California Geological Survey (CGS) developed several earthquake scenarios and evaluated potential seismic hazards, including ground shaking, surface fault rupture, liquefaction, and landslide hazards associated with these earthquake scenarios. The results of these...
Seismicity of the Earth 1900-2012 Java and vicinity
Eric S. Jones, Gavin P. Hayes, Melissa Bernardino, Fransiska K. Dannemann, Kevin P. Furlong, Harley M. Benz, Antonio Villaseñor
2014, Open-File Report 2010-1083-N
The Sunda convergent margin extends for 5,600 km from the Bay of Bengal and the Andaman Sea, both located northwest of the map area, towards the island of Sumba in the southeast, and then continues eastward as the Banda arc system. This tectonically active margin is a result of the...
Sampling little fish in big rivers: Larval fish detection probabilities in two Lake Erie tributaries and implications for sampling effort and abundance indices
Jeremy J. Pritt, Mark R. DuFour, Christine M. Mayer, Edward F. Roseman, Robin L. DeBruyne
2014, Transactions of the American Fisheries Society (143) 1011-1027
Larval fish are frequently sampled in coastal tributaries to determine factors affecting recruitment, evaluate spawning success, and estimate production from spawning habitats. Imperfect detection of larvae is common, because larval fish are small and unevenly distributed in space and time, and coastal tributaries are often large and heterogeneous. We estimated...