A reference genome assembly for the continentally distributed ring-necked snake, Diadophis punctatus
Erin P. Westeen, Merly Escalona, Eric Beraut, Mohan P. A. Marimuthu, Oanh Nguyen, Robert N. Fisher, Erin Toffelmier, H. Bradley Shaffer, Ian J. Wang
2023, Journal of Heredity (114) 690-697
Snakes in the family Colubridae include more than 2,000 currently recognized species, and comprise roughly 75% of the global snake species diversity on Earth. For such a spectacular radiation, colubrid snakes remain poorly understood ecologically and genetically. Two subfamilies, Colubrinae (788 species) and Dipsadinae (833 species), comprise the bulk...
a-positive: A robust estimator of the earthquake rate in incomplete or saturated catalogs
Nicholas van der Elst, Morgan T. Page
2023, JGR Solid Earth (128)
Detection thresholds in earthquake catalogs frequently change in time due to station coverage improvements and network saturation effects during active periods such as mainshock-aftershock cascades. This presents a challenge to seismicity-rate estimation; there is a tradeoff between using as low a minimum magnitude as possible to maximize...
Summary of the history and research of the U.S. Geological Survey gas hydrate properties laboratory in Menlo Park, California, active from 1993 to 2022
Laura A. Stern, Stephen H. Kirby
2023, Open-File Report 2023-1063
The U.S. Geological Survey (USGS) Clathrate Hydrate Properties Project, active from 1993 to 2022 in Menlo Park, California, stemmed from an earlier project on the properties of planetary ices supported by the National Aeronautics and Space Administration’s (NASA’s) Planetary Geology and Geophysics Program. We took a material science approach in...
Priority research needs to inform amphibian conservation in the Anthropocene
Evan H. Campbell Grant, Staci M. Amburgey, Brian Gratwicke, Victor Acosta Chaves, Anat M. Belasen, David Bickford, Carsten Brühl, Natalie E. Calatayud, Nick Clemann, Simon Clulow, Jelka Crnobrnja-Isailovic, Jeff Dawson, David A. De Angelis, C. Kenneth Dodd Jr., Annette Evans, Gentile Francesco Ficetola, Mattia Falaschi, Sergio González-Mollinedo, David M. Green, Roseanna Gamlen-Greene, Richard A. Griffiths, Brian J. Halstead, Craig Hassapakis, Geoffrey Heard, Catharina Karlsson, Tom Kirschey, Blake Klocke, Tiffany A. Kosch, Sophia Kusterko Novaes, Luke Linhoff, John C. Maerz, Brittany A. Mosher, Katherine M O'Donnell, Leticia M. Ochoa-Ochoa, Deanna H. Olson, Kristiina Ovaska, J. Dale Roberts, Aimee J. Silla, Tariq Stark, Jeanne Tarrant, R. Upton, Judit Vörös, Erin L. Muths
2023, Conservation Science and Practice (5)
The problem of global amphibian declines has prompted extensive research over the last three decades. Initially, the focus was on identifying and characterizing the extent of the problem, but more recently efforts have shifted to evidence-based research designed to identify best solutions and to improve conservation outcomes. Despite extensive accumulation...
Polar bear's range dynamics and survival in the Holocene
Heikki Seppä, Marit-Solveig Seidenkrantz, Beth Elaine Caissie, Marc Macias Fauria
2023, Quaternary Science Reviews (317)
Polar bear (Ursus maritimus) is the apex predator of the Arctic, largely dependent on sea-ice. The expected disappearance of the ice cover of the Arctic seas by the mid 21st century is predicted to cause a dramatic decrease in the global range and population size of the species. To place...
Local topography and streambed hydraulic conductivity influence riparian groundwater age and groundwater-surface water connection
Sara R. Warix, Alexis Navarre-Sitchler, Andrew H. Manning, Kamini Singha
2023, Water Resources Research (59)
The western U.S. is experiencing increasing rain to snow ratios due to climate change, and scientists are uncertain how changing recharge patterns will affect future groundwater-surface water connection. We examined how watershed topography and streambed hydraulic conductivity impact groundwater age and stream discharge at eight sites along a headwater stream...
Development of a volcanic risk management system at Mount St. Helens—1980 to present
Heather M. Wright, Carolyn L. Driedger, John S. Pallister, Christopher G. Newhall, Michael A. Clynne, John W. Ewert
2023, Bulletin of Volcanology (85)
Here, we review volcanic risk management at Mount St. Helens from the perspective of the US Geological Survey’s (USGS) experience over the four decades since its 18 May 1980 climactic eruption. Prior to 1980, volcano monitoring, multidisciplinary eruption forecasting, and interagency coordination for eruption response were...
Characterization of peak streamflows and flooding in select areas of Pennsylvania from the remnants of Hurricane Ida, September 1–2, 2021
Marla H. Stuckey, Matthew D. Conlon, Mitchell R. Weaver
2023, Scientific Investigations Report 2023-5086
Pennsylvania experienced heavy rainfall on September 1 and 2, 2021, as the remnants of Hurricane Ida swept over parts of the State. Much of eastern and south-central Pennsylvania received 5 to 10 inches of rain, and most of the rainfall fell within little more than 6 hours. Southeastern Pennsylvania experienced...
Mapping karst groundwater flow paths and delineating recharge areas for Fern Cave, Alabama, through the use of dye tracing
Benjamin Miller, Benjamin Tobin
2023, Scientific Investigations Map 3506
Fern Cave in Jackson County, Alabama, is a 15.6-mile-long (25.1-kilometer) cave system, managed by the U.S. Fish and Wildlife Service and Southeastern Cave Conservancy, that has the second highest biodiversity of any cave in the southeastern United States. Groundwater in karst ecosystems is known to be susceptible to impacts from...
Dead-end hollow fiber ultrafiltration capture of environmental DNA for freshwater mussel (Unionidae) species detection with metabarcoding
Anna M. McKee, Katy E. Klymus, Yer Lor, Marissa H Kaminski, Tariq Tajjioui, Nathan Johnson, Matthew Carroll, Christopher Goodson, Stephen Frank Spear
2023, Environmental DNA (5) 1148-1162
Insufficient water sample volumes can be a limiting factor for detecting species with environmental DNA (eDNA) from aquatic habitats. We compared detections of freshwater mussel (Unionidae) communities using large water sample volumes and dead-end hollow fiber ultrafiltration (D-HFUF or DEUF) with traditional eDNA filtration...
Leveraging multimission satellite data for spatiotemporally coherent cyanoHAB monitoring
Kate Colleen Fickas, Ryan O'Shea, Nima Pahlevan, Brandon Smith, Sarah Bartlett, Jennifer L. Wolny
2023, Frontiers in Remote Sensing (4)
Cyanobacteria harmful algal blooms (cyanoHABs) present a critical public health challenge for aquatic resource and public health managers. Satellite remote sensing is well-positioned to aid in the identification and mapping of cyanoHABs and their dynamics, giving freshwater resource managers a tool for both rapid and long-term protection of...
To remediate or not? Source identification in an acid mine drainage stream, Warden Gulch, Colorado
Matthew M. Jones, Robert L. Runkel, Diane M. McKnight
2023, Mine Water and the Environment (42) 383-398
A synoptic water quality study was implemented in Warden Gulch, a headwater stream affected by metals that are contributed by both natural and mining-impacted sources. Warden Gulch is a tributary to Peru Creek (Colorado, USA), where emplacement of a mine tunnel bulkhead and other remedial actions...
California State waters map series—Benthic habitat characterization in the region offshore of Morro Bay, California
Guy R. Cochrane, Rikk Kvitek, Aaron Cole, Meghan Sherrier, Alia Roca-Lezra, Sean Hallahan, Peter Dartnell
2023, Open-File Report 2023-1064
Coastal and Marine Ecological Classification Standard geoform, substrate, and biotic component geographic information system products were developed for the California State waters of south-central California in the region offshore of Morro Bay. The study was motivated by interest in development of offshore wind-energy capacity and infrastructure in Federal waters offshore....
U.S. Geological Survey science vision for native freshwater mussel research in the United States
Teresa J. Newton, Nathan A. Johnson, David H. Hu
2023, Circular 1511
Executive SummaryNorth America is a global center for native freshwater mussel (order Unionida, hereinafter “mussels”) diversity, with more than 350 species. Mussels are among the most imperiled fauna on the planet. Reasons for both local and widespread declines in mussels are mostly unknown, although the threats may include habitat loss...
3-D wave propagation simulations of Mw 6.5+ earthquakes on the Tacoma Fault, Washington state, considering the effects of topography, a geotechnical gradient, and a fault damage zone
Ian Patrick Stone, Erin Wirth, Alex R. R. Grant, Arthur Frankel
2023, Bulletin of the Seismological Society of America (113) 2519-2542
We simulate shaking in Tacoma, Washington, and surrounding areas from Mw 6.5 and 7.0 earthquakes on the Tacoma fault. Ground motions are directly modeled up to 2.5 Hz using kinematic, finite‐fault sources; a 3D seismic velocity model considering regional geology; and a model mesh with 30 m sampling at the ground surface....
2.d.7 Lake water levels
Benjamin M. Kraemer, Hilary A. Dugan, Sofia La Fuente, Michael Frederick Meyer
2023, Bulletin American Meteorological Society (104) S61-S63
No abstract available....
Upscaling wetland methane emissions from the FLUXNET-CH4 Eddy Covariance Network (UpCH4 v1.0): Model development, network assessment, and budget comparison
Gavin McNicol, Etienne Fluet-Chouinard, Zutao Ouyang, Sarah Knox, Zhang Zhen, Tuula Aalto, Sheel Bansal, Kuang-Yu Chang, Min Chen, Kyle Delwiche, Sarah Feron, Mathias Goeckede, Jinxun Liu, Avni Malhotra, Joe R. Melton, William Riley, Rodrigo Vargas, Kunxiaojia Yuan, Qing Yang, Qing Zhu, Pavel Alekseychik, Mika Aurela, David P. Billesbach, David I. Campbell, Jiquan Chen, Housen Chu, Ankur Desai, Eugenie Euskirchen, Jordan Goodrich, Timothy Griffis, Manuel Helbig, Takashi Hirano, Hiroki Iwata, Gerald Jurasinski, John King, Franziska Koebsch, Randall Kolka, Ken Krauss, Annalea Lohila, Ivan Mammarella, Mats Nilson, Asko Noormets, Walter Oechel, Matthias Peichl, Torsten Sachs, Ayaka Sakabe, Christopher Schulze, Oliver Sonnentag, Ryan C. Sullivan, Eeva-Stiina Tuittila, Masahito Ueyama, Timo Vesala, Eric Ward, Christian Wille, Guan Xhuan Wong, Donatella Zona, Lisamarie Windham-Myers, Benjamin Poulter, Robert B. Jackson
2023, AGU Advances (4)
Wetlands are responsible for 20%–31% of global methane (CH4) emissions and account for a large source of uncertainty in the global CH4 budget. Data-driven upscaling of CH4 fluxes from eddy covariance measurements can provide new and independent bottom-up estimates of wetland CH4 emissions. Here, we develop a six-predictor random forest upscaling model (UpCH4),...
Seasonal differences and grazing pressure alter the fate of gold nanoparticles in a microcosm experiment
Christina M. Bergemann, Astrid Avellan, Brittany G Perrotta, Emily S. Bernhardt, Marie Simonin
2023, Environmental Science & Technology (57) 13970-13979
Gold nanoparticles (AuNPs) are used as models to track and predict NP fates and effects in ecosystems. Previous work found that aquatic macrophytes and their associated biofilm primarily drove the fate of AuNPs within aquatic ecosystems and that seasonality was an important abiotic factor in the fate of AuNPs. Therefore,...
Contrasting mercury contamination scenarios and site susceptibilities confound fish mercury burdens in Suriname, South America
Arioené Vreedzaam, Paul Ouboter, Ashna D. Hindori-Mohangoo, Ryan F. Lepak, Samantha L. Rumschlag, Sarah E. Janssen, Gwen Landburg, Arti Shankar, Wilco Zijlmans, Maureen Y. Lichtveld, Jeffrey K. Wickliffe
2023, Environmental Pollution (336)
In Suriname, mercury (Hg) use has recently increased because of gold mining, which has put fish-reliant communities (e.g., Indigenous and Tribal) at risk of enhanced Hg exposure through the riverine fish these communities consume. To quantify how the magnitude of these risks change according to location and time, we measured...
Updates to CE-QUAL-W2 models for select U.S. Army Corps of Engineers reservoirs in the Willamette Valley Project and an inter-reservoir reach of the Middle Fork Willamette River, northwestern Oregon
Laurel E. Stratton Garvin, Norman L. Buccola, Stewart A. Rounds
2023, Scientific Investigations Report 2023-5085
Mechanistic models capable of simulating hydrodynamics and water temperature in rivers and reservoirs are valuable tools for investigating thermal conditions and their relation to dam operations and streamflow in river basins where upstream water storage and management decisions have an important influence on river reaches with threatened fish populations. In...
A nitrifier-enriched microbial community contributes to the degradation of environmental DNA
Rachelle Elaine Beattie, Caren C. Helbing, Jacob J. Imbery, Katy E. Klymus, Jonathan Lopez Duran, Cathy A. Richter, Anita A. Thambirajah, Nathan Thompson, Thea Margaret Edwards
2023, Environmental DNA (5) 1473-1483
Environmental DNA (eDNA) surveys are a promising alternative to traditional monitoring of invasive species, rare species, and biodiversity. Detecting organism-specific eDNA reduces the need to collect physical specimens for population estimates, and the high sensitivity of eDNA assays may improve detection of rare or cryptic species. However, correlating estimated concentrations...
Proximate factors affecting mortality and maternal abandonment of young free-roaming feral horse foals
Sarah R. B. King, Mary J. Cole, Christine Barton, Kathryn A. Schoenecker
2023, Journal of Veterinary Behavior (66)
The burgeoning population of feral horses in the American west is due to high population growth, resulting from low adult mortality and high foal survival. In two populations of feral horses in western Utah, USA only 15 foals died (5%; mean age <1 month) over a 4-year period. Seven additional...
Informing management of recovering predators and their prey with ecological diffusion models
Joseph Michael Eisaguirre, Perry J. Williams, Xinyi Lu, Michelle L. Kissling, Paul A Schutte, Benjamin P Weitzman, William S. Beatty, George G. Esslinger, Jamie N. Womble, Mevin B. Hooten
2023, Frontiers in Ecology and the Environment (21) 479-488
The reintroduction and recovery of predators can be ecologically beneficial as well as socially and economically controversial. However, the growth and expansion of predator populations, and thus their ecological, social, and economic impacts, are not static but rather they vary in space and time. We propose a spatiotemporal statistical modeling...
Prioritizing science efforts to inform decision making on public lands
Sarah K. Carter, Travis Haby, Jennifer K. Meineke, Alison C. Foster, Laine E. McCall, Leigh Espy, Megan Gilbert, Jeffrey E. Herrick, Karen Prentice
2023, Frontiers in Ecology and the Environment (21) 453-460
Public land management agencies in the US are committed to using science-informed decision making, but there has been little research on the types and topics of science that managers need most to inform their decisions. We used the National Environmental Policy Act to identify four types of science information needed...
Baiting and banding: Expert opinion on how bait trapping may influence the occurrence of highly pathogenic avian influenza (HPAI) among dabbling ducks
Jennifer F. Provencher, Alana A. E. Wilcox, Samantha E. J. Gibbs, Lesley-Anne Howes, Mark L. Mallory, Margo J. Pybus, Andrew M. Ramey, Eric T. Reed, Chris Sharp, Catherine Soos, Iga Stasiak, Jim O. Leafloor
2023, Journal of Wildlife Diseases (59) 590-600
A Eurasian lineage highly pathogenic avian influenza virus (HPAIV) of the clade 2.3.4.4b (Goose/Guangdong lineage) was detected in migratory bird populations in North America in December 2021, and it, along with its reassortants, have since caused wild and domestic bird outbreaks across the continent. Relative to previous outbreaks, HPAIV cases...
