Patterns of larval sucker emigration from the Sprague and lower Williamson Rivers of the Upper Klamath Basin, Oregon, after the removal of Chiloquin Dam - 2009-10 Annual Report
Craig M. Ellsworth, Barbara A. Martin
2012, Open-File Report 2012-1037
Executive Summary In 2009 and 2010, drift samples were collected from six sites on the lower Sprague and Williamson Rivers to assess drift patterns of larval Lost River suckers (Deltistes luxatus) (LRS) and shortnose suckers (Chasmistes brevirostris) (SNS). The objective of this study was to characterize the drift timing, relative abundance,...
Monitoring inland storm tide and flooding from Hurricane Irene along the Atlantic Coast of the United States, August 2011
Brian E. McCallum, Jaime A. Painter, Eric R. Frantz
2012, Open-File Report 2012-1022
The U.S. Geological Survey (USGS) deployed a temporary monitoring network of water-level sensors at 212 locations along the Atlantic coast from South Carolina to Maine during August 2011 to record the timing, areal extent, and magnitude of inland hurricane storm tide and coastal flooding generated by Hurricane Irene. Water-level sensor...
U.S. Department of the Interior Southeast Climate Science Center Science and Operational Plan
Sonya A. Jones, Melinda S. Dalton
2012, Open-File Report 2012-1034
Climate change challenges many of the basic assumptions routinely used by conservation planners and managers, including the identification and prioritization of areas for conservation based on current environmental conditions and the assumption those conditions could be controlled by management actions. Climate change will likely alter important ecosystem drivers (temperature, precipitation,...
Evaluation of long-term water-level declines in basalt aquifers near Mosier, Oregon
Erick R. Burns, David S. Morgan, Karl K. Lee, Jonathan V. Haynes, Terrence D. Conlon
2012, Scientific Investigations Report 2012-5002
The Mosier area lies along the Columbia River in northwestern Wasco County between the cities of Hood River and The Dalles, Oregon. Major water uses in the area are irrigation, municipal supply for the city of Mosier, and domestic supply for rural residents. The primary source of water is groundwater...
Numerical models of salt marsh evolution: ecological, geomorphic, and climatic factors
Sergio Fagherazzi, Matthew L. Kirwan, Simon M. Mudd, Glenn R. Guntenspergen, Stijn Temmerman, Andrea D’Alpaos, Johan van de Koppel, John Rybczyk, Enrique Reyes, Chris Craft, Jonathan Clough
2012, Reviews of Geophysics (50)
Salt marshes are delicate landforms at the boundary between the sea and land. These ecosystems support a diverse biota that modifies the erosive characteristics of the substrate and mediates sediment transport processes. Here we present a broad overview of recent numerical models that quantify the formation and evolution of salt...
Elevation uncertainty in coastal inundation hazard assessments
Dean B. Gesch
Sorin Cheval, editor(s)
2012, Book chapter, Natural Disasters
Coastal inundation has been identified as an important natural hazard that affects densely populated and built-up areas (Subcommittee on Disaster Reduction, 2008). Inundation, or coastal flooding, can result from various physical processes, including storm surges, tsunamis, intense precipitation events, and extreme high tides. Such events cause quickly rising water levels....
First description of autumn migration of Sooty Falcon Falco concolor from the United Arab Emirates to Madagascar using satellite telemetry
Sàlim Javed, David C. Douglas, Shahid Noor Khan, Junid Nazeer Shah, Abdullah Ali Al Hammadi
2012, Bird Conservation International (22) 106-119
The movement and migration pattern of the 'Near Threatened' Sooty Falcon Falco concolor is poorly known. Sooty Falcons breed on the islands of the Arabian Gulf after arriving from their non-breeding areas that are mainly in Madagascar. In the first satellite tracking of the species we fitted a 9.5 g...
Evidence of hypoxic foraging forays by yellow perch (Perca flavescens) and potential consequences for prey consumption
James J. Roberts, Paul A. Grecay, Stuart A. Ludsin, Steve A. Pothoven, Henry A. Vanderploeg, Tomas O. Hook
2012, Freshwater Biology (57) 922-937
Previous studies in a variety of ecosystems have shown that ecologically and economically important benthic and bentho-pelagic fishes avoid hypoxic (−1) habitats by moving vertically or horizontally to more oxygenated areas. While avoidance of hypoxic conditions generally leads to a complete shift away from preferred benthic prey,...
Can elevated CO2 modify regeneration from seed banks of floating freshwater marshes subjected to rising sea-level?
Beth A. Middleton, Karen L. McKee
2012, Hydrobiologia (683) 123-133
Higher atmospheric concentrations of CO2 can offset the negative effects of flooding or salinity on plant species, but previous studies have focused on mature, rather than regenerating vegetation. This study examined how interacting environments of CO2, water regime, and salinity affect seed germination and seedling biomass of floating freshwater marshes...
Shipboard magnetic field "noise" reveals shallow heavy mineral sediment concentrations in Chesapeake Bay
Anjana K. Shah, Peter R. Vogt, Joseph G. Rosenbaum, Wayne L. Newell, Thomas M. Cronin, Debra A. Willard, Rick A. Hagen, John Brozena, Albert Hofstra
2012, Marine Geology (303-306) 26-41
Shipboard magnetic field data collected over Chesapeake Bay exhibit low-amplitude, short-wavelength anomalies that most likely indicate shallow concentrations of heavy mineral sediments. Piston core layers and black sand beach samples exhibit enhanced magnetic susceptibilities and carry remanent magnetization, with mineralogical analyses indicating ilmenite and trace magnetite and/or maghemite and hematite....
Spatially variable stage-driven groundwater-surface water interaction inferred from time-frequency analysis of distributed temperature sensing data
Kisa Mwakanyamale, Lee Slater, Frederick D. Day-Lewis, Mehrez Elwaseif, Carole D. Johnson
2012, Geophysical Research Letters (39)
Characterization of groundwater-surface water exchange is essential for improving understanding of contaminant transport between aquifers and rivers. Fiber-optic distributed temperature sensing (FODTS) provides rich spatiotemporal datasets for quantitative and qualitative analysis of groundwater-surface water exchange. We demonstrate how time-frequency analysis of FODTS and synchronous river stage time series from the...
Cross-seasonal patterns of avian influenza virus in breeding and wintering migratory birds: a flyway perspective
Nichola J. Hill, John Y. Takekawa, Carol J. Cardona, Brandt W. Meixell, Joshua T. Ackerman, Jonathan A. Runstadler, Walter M. Boyce
2012, Vector-Borne and Zoonotic Diseases (12) 243-253
The spread of avian influenza viruses (AIV) in nature is intrinsically linked with the movements of wild birds. Wild birds are the reservoirs for the virus and their migration may facilitate the circulation of AIV between breeding and wintering areas. This cycle of dispersal has become widely accepted; however, there...
Hood River PIT-tag interrogation system efficiency study. Annual report of U.S. Geological Survey activities: November 2010-October 2011
Ian G. Jezorek, Patrick J. Connolly
2012, Report
Introduction During summer 2010, an agreement was made between the US Geological SurveyColumbia River Research Laboratory (USGS-CRRL) and the Confederated Tribes of the Warm Springs (CTWS) to operate an experimental Passive Integrated Transponder (PIT)-tag interrogation system (PTIS) near the mouth of the Hood River for a year and provide fishdetection efficiency...
Wind River watershed restoration: Annual report of U.S. Geological Survey activities November 2010 – October 2011
Ian G. Jezorek, Patrick J. Connolly, Carrie S. Munz
2012, Report
This report summarizes work completed by U.S. Geological Survey’s Columbia River Research Laboratory (USGS-CRRL) in the Wind River subbasin during November 2010 through October 2011 under Bonneville Power Administration (BPA) contract 40481. The primary focus of USGS activities during this contract was on tagging of juvenile steelhead Oncorhynchus mykiss with...
Concentration of organic contaminants in fish and their biological effects in a wastewater-dominated urban stream
Nuria Lozano, Clifford P. Rice, James Pagano, Larry Zintek, Larry B. Barber, Elizabeth W. Murphy, Todd G. Nettesheim, Thomas A. Minarik, Heiko L. Schoenfuss
2012, Science of the Total Environment (420) 191-201
Data are presented on the concentrations of alkylphenol and alkylphenol ethoxylates (APEs) and persistent organic compounds in largemouth bass collected from a waste-water dominated stream in downtown Chicago. The fish residue concentrations of APEs are compared to concentrations of the APEs in the water that were collected at weekly intervals...
Applying additive modeling and gradient boosting to assess the effects of watershed and reach characteristics on riverine assemblages
Kelly O. Maloney, Matthias Schmid, Donald E. Weller
2012, Methods in Ecology and Evolution (3) 116-128
Issues with ecological data (e.g. non-normality of errors, nonlinear relationships and autocorrelation of variables) and modelling (e.g. overfitting, variable selection and prediction) complicate regression analyses in ecology. Flexible models, such as generalized additive models (GAMs), can address data issues, and machine learning techniques (e.g. gradient boosting) can help resolve modelling...
Grain-size segregation and levee formation in geophysical mass flows
C.G. Johnson, B. P. Kokelaar, Richard M. Iverson, M. Logan, R.G. LaHusen, J.M.N.T. Gray
2012, Journal of Geophysical Research (117)
Data from large-scale debris-flow experiments are combined with modeling of particle-size segregation to explain the formation of lateral levees enriched in coarse grains. The experimental flows consisted of 10 m3 of water-saturated sand and gravel, which traveled ∼80 m down a steeply inclined flume before forming an elongated leveed deposit 10 m...
Wetland hydrodynamics and long-term use of spring migration areas by lesser scaup in eastern South Dakota
Sharon N. Kahara, Steven R. Chipps
2012, Great Plains Research (22) 69-78
Lesser scaup (Aythya affinis [Eyton]) populations remain below their long-term average despite improved habitat conditions along spring migration routes and at breeding grounds. Scaup are typically associated with large, semipermanent wetlands and exhibit regional preferences along migration routes. Identifying consistently used habitats for conservation and restoration is complicated by irregular wetland...
Geomorphic setting, aquatic habitat, and water-quality conditions of the Molalla River, Oregon, 2009-10
Kurt D. Carpenter, Christiana R. Czuba, Christopher S. Magiri, Mathieu D. Marineau, Steve Sobieszczyk, Jonathan A. Czuba, Mackenzie K. Keith
2012, Scientific Investigations Report 2012-5017
This report presents results from a 2009-10 assessment of the lower half of the Molalla River. The report describes the geomorphic setting and processes governing the physical layout of the river channel and evaluates changes in river geometry over the past several decades using analyses of aerial imagery and other...
Deep magmatic degassing versus scrubbing: Elevated CO2 emissions and C/S in the lead-up to the 2009 eruption of Redoubt Volcano, Alaska
Cynthia A. Werner, William C. Evans, Peter J. Kelly, Robert G. McGimsey, Melissa Pfeffer, Michael P. Doukas, Christina A. Neal
2012, Geochemistry, Geophysics, Geosystems (13)
We report CO2, SO2, and H2S emission rates and C/S ratios during the five months leading up to the 2009 eruption of Redoubt Volcano, Alaska. CO2emission rates up to 9018 t/d and C/S ratios ≥30 measured in the months prior to the eruption were critical for fully informed forecasting efforts. Observations...
Comparison of particle-tracking and lumped-parameter age-distribution models for evaluating vulnerability of production wells to contamination
S. M. Eberts, J.K. Böhlke, L. J. Kauffman, B.C. Jurgens
2012, Hydrogeology Journal (20) 263-282
Environmental age tracers have been used in various ways to help assess vulnerability of drinking-water production wells to contamination. The most appropriate approach will depend on the information that is available and that which is desired. To understand how the well will respond to changing nonpoint-source contaminant inputs at the...
On the relationship between sea level and Spartina alterniflora production
Matthew L. Kirwan, Robert R. Christian, Linda K. Blum, Mark M. Brinson
2012, Ecosystems (15) 140-147
A positive relationship between interannual sea level and plant growth is thought to stabilize many coastal landforms responding to accelerating rates of sea level rise. Numerical models of delta growth, tidal channel network evolution, and ecosystem resilience incorporate a hump-shaped relationship between inundation and plant primary production, where vegetation growth...
AquaPathogen X--A template database for tracking field isolates of aquatic pathogens
Evi Emmenegger, Gael Kurath
2012, Fact Sheet 2012-3015
AquaPathogen X is a template database for recording information on individual isolates of aquatic pathogens and is available for download from the U.S. Geological Survey (USGS) Western Fisheries Research Center (WFRC) website (http://wfrc.usgs.gov). This template database can accommodate the nucleotide sequence data generated in molecular epidemiological studies along with the...
Organic compounds assessed in Neuse River water used for public supply near Smithfield, North Carolina, 2002-2005
Michelle C. Moorman
2012, Fact Sheet 2012-3007
Organic compounds studied in a U.S. Geological Survey (USGS) assessment of water samples from the Neuse River and the public supply system for the Town of Smithfield, North Carolina, generally are manmade and include pesticides, gasoline hydrocarbons, solvents, personal-care and domestic-use products, disinfection by-products, and manufacturing additives. Of the 277...
Surficial geologic map of the Norton-Manomet-Westport-Sconticut Neck 23-quadrangle area in southeast Massachusetts
Byron D. Stone, Janet Radway Stone, Mary L. DiGiacomo-Cohen, Kevin A. Kincare
2012, Open-File Report 2006-1260-F
The surficial geologic map shows the distribution of nonlithified earth materials at land surface in an area of 23 7.5-minute quadrangles (919 mi2 total) in southeastern Massachusetts. Across Massachusetts, these materials range from a few feet to more than 500 ft in thickness. They overlie bedrock, which crops out in...