Resurgence of specialized shade coffee cultivation: Effects on pollination services and quality of coffee production
Sara Guiti Prado, Jaime A. Collazo, R. E. Irwin
2018, Agriculture, Ecosystems and Environment (265) 567-575
Since the early 2000s, there has been a resurgence in shade coffee production on the island of Puerto Rico. The newly restored specialized shade canopy consists of four native tree species, three of which are nitrogen fixers, and is intended to provide 30% shade cover once the trees are matured....
Temporal evaluation of estrogenic endocrine disruption markers in smallmouth bass (Micropterus dolomieu) reveals seasonal variability in intersex
Luke R. Iwanowicz, A.E. Pinkney, C.P. Guy, A.M. Major, K. Munney, Vicki S. Blazer, David Alvarez, Heather L. Walsh, Adam J. Sperry, Lakyn R. Sanders, D. R. Smith
2018, Science of the Total Environment (646) 245-256
A reconnaissance project completed in 2009 identified intersex and elevated plasma vitellogenin in male smallmouth bass inhabiting the Missisquoi River, VT. In an attempt to identify the presence and seasonality of putative endocrine disrupting chemicals or other factors associated with these observations, a comprehensive reevaluation was conducted between September 2012...
KG²B, a collaborative benchmarking exercise for estimating the permeability of the Grimsel granodiorite - Part 2: modeling, microstructures and complementary data
Christian David, J. Wassermann, F. Amann, J.M. Klaver, C. Davy, J. Sarout, L. Esteban, E.H. Rutter, Q. Hu, L. Louis, P. Delage, David A. Lockner, A.P.S. Selvadurai, T Vanorio, A. Amann Hildenbrand, P.G. Meredith, J. Browning, T.M. Mitchell, C. Madonna, J. Billiotte, T. Reuschle, D. Lasseux, J. Fortin, R. Lenormand, D. Loggia, F. Nono, G. Boitnott, E. Jahns, Fleury. M., G. Berthe, P. Braun, D. Gregoire, L. Perrier, P. Polito, Y. Jannot, A. Sommier, B. Krooss, R. Fink, A. Clark
2018, Geophysical Journal International (215) 825-843
Measuring and modelling the permeability of tight rocks remains a challenging task. In addition to the traditional sources of errors that affect more permeable formations (e.g. sample selection, non-representative specimens, disturbance introduced during sample acquisition and preparation), tight rocks can be particularly prone to solid–fluid interactions and thus more sensitive...
Lactation and resource limitation affect stress responses, thyroid hormones, immune function, and antioxidant capacity of sea otters (Enhydra lutris)
Sarah M. Chinn, Daniel Monson, M. Tim Tinker, Michelle M. Staedler, Daniel E. Crocker
2018, Ecology and Evolution (8) 8433-8447
Lactation is the most energetically demanding stage of reproduction in female mammals. Increased energetic allocation toward current reproduction may result in fitness costs, although the mechanisms underlying these trade‐offs are not well understood. Trade‐offs during lactation may include reduced energetic allocation to cellular maintenance, immune response, and survival and may...
Caldera life-cycles of the Yellowstone hotspot track: Death and rebirth of the Heise Caldera
Marlon M. Jean, Eric H. Christiansen, Duane E. Champion, Scott K. Vetter, William M. Phillips, Stephan Schuth, John W. Shervais
2018, Journal of Petrology (59) 1643-1670
As one of the most geochemically unique drill cores recovered within the Yellowstone–Snake River Plain (YSRP) province, the Sugar City geothermal test well was drilled into intra-caldera rhyolite lavas and tuffs erupted during the middle to late Pliocene and the resurgent basaltic volcanism erupted during the Pleistocene. This sequence...
Geochemistry and microbiology of groundwater and solids from extraction and monitoring wells and their relation to well efficiency at a Federally operated confined disposal facility, East Chicago, Indiana
Randall E. Bayless, Travis R. Cole, David C. Lampe, R.E. Travis, Marjorie S. Schulz, Paul M. Buszka
2018, Scientific Investigations Report 2018-5073
In cooperation with the U.S. Army Corps of Engineers, Chicago District, the U.S. Geological Survey investigated the processes affecting water quality, geochemistry, and microbiology in representative extraction and monitoring wells at a confined disposal facility (CDF) in East Chicago, Indiana. The CDF is a 140-acre Federally-managed facility that was the...
Decomposing leftovers: Event, path, and site residuals for a small magnitude ANZA region GMPE
Valerie Jean Sahakian, Annemarie S. Baltay Sundstrom, Thomas C. Hanks, Janine S. Buehler, Frank L. Vernon, Deborah L. Kilb
2018, Bulletin of the Seismological Society of America (108) 2478-2492
Ground‐motion prediction equations (GMPEs) are critical elements of probabilistic seismic hazard analysis (PSHA), as well as for other applications of ground motions. To isolate the path component for the purpose of building nonergodic GMPEs, we compute a regional GMPE using a large dataset of peak ground accelerations (PGAs) from small‐magnitude...
BioTIME: A database of biodiversity time series for the Anthropocene
Maria Dornelas, Laura H. Antao, Faye Moyes, Amanda E. Bates, Anne E. Magurran, Dusan Adam, Asem A. Akhmetzhanova, Ward Appeltans, Jose Manuel Arcos, Haley Arnold, Narayanan Ayyappan, Gal Badihi, Andrew H. Baird, Miguel Barbosa, Tiago Egydio Barreto, Claus Bassler, Alecia Bellgrove, Jonathan Belmaker, Lisandro Benedetti-Cecchi, Brian J. Bett, Anne D. Bjorkman, Magdalena Blazewicz, Shane Blowes, Christopher P. Bloch, Timothy C. Bonebrake, Susan Boyd, Matt Bradford, Andrew J. Brooks, James H. Brown, Helge Bruelheide, Phaedra E. Budy, Fernando Carvalho, Edward Castaneda-Moya, Chaolun Allen Chen, John F. Chamblee, Tory J. Chase, Laura Siegwart Collier, Sharon K. Collinge, Richard Condit, Elisabeth J. Cooper, J. Hans C. Cornelissen, Unai Cotano, Shannan Kyle Crow, Gabriella Damasceno, Claire H. Davies, Robert A. Davis, Frank P. Day, Steven Degraer, Tim S. Doherty, Timothy E. Dunn, Giselda Durigan, J. Emmett Duffy, Dor Edelist, Graham Edgar, Robin Elahi, Sarah C. Elmendorf, Anders Enemar, S. K. Morgan Ernest, Reuben Escribano, Marc Estiarte, Brian S. Evans, Tung-Yung Fan, Fabiano Turini Farah, Luiz Loureiro Fernandes, Fabio Z. Farneda, Alessandra Fidelis, Robert Fitt, Anna Maria Fosaa, Geraldo Antonio Daher Correa Franco, Grace E. Frank, William R. Fraser, Hernando Garcia, Roberto Cazzolla Gatti, Or Givan, Elizabeth Gorgone-Barbosa, William A. Gould, Corrina Gries, Gary D. Grossman, Julio R. Gutierrez, Stephen Hale, Mark E Harmon, John Harte, Gary Haskins, Henshaw Donald L., Luise Hermanutz, Pamela Hidalgo, Pedro Higuchi, Andrew Hoey, Gert Van Hoey, Annika Hofgaard, Kristen T. Holeck, Robert D. Hollister, Richard Holmes, Mia Hoogenboom, Chih-hao Hsieh, Steven P. Hubbell, Falk Huettmann, Christine L. Huffard, Allen H. Hurlbert, Natalia Macedo Ivanauskas, David Janik, Ute Jandt, Anna Jazdzewska, Tore Johannessen, Jill F. Johnstone, Julia Jones, Faith A. M. Jones, Jungwon Kang, Tasrif Kartawijaya, Erin C. Keeley, Douglas A. Kelt, Rebecca Kinnear, Kari Klanderud, Halvor Knutsen, Christopher C. Koenig, Alessandra R. Kortz, Kamil Kral, Linda A. Kuhnz, Chao-Yang Kuo, David J. Kushner, Claire Laguionie-Marchais, Lesley T. Lancaster, Cheol Min Lee, Jonathan S. Lefcheck, Esther Levesque, David A. Lightfoot, Francisco Lloret, John D. Lloyd, Adria Lopez-Baucells, Maite Louzao, Joshua S. Madin, Borgbor Magnusson, Shahar Malamud, Iain Matthews, Kent P. McFarland, Brian J. McGill, Diane M. McKnight, William O. McLarney, Jason Meador, Peter L. Meserve, Daniel J. Metcalfe, Christoph F. J. Meyer, Anders Michelsen, Nataliya Milchakova, Tom Moens, Even Moland, Jon A. Moore, Carolina Mathias Moreira, Jorg Muller, Grace Murphy, Isla H. Myers-Smith, Randall W. Myster, Andrew Naumov, Francis Neat, James A. Nelson, Michael Paul Nelson, Stephen F. Newton, Natalia Norden, Jeffrey C. Oliver, Esben M. Olsen, Vladimir G. Onipchenko, Krzysztof Pabis, Robert J. Pabst, Alain Paquette, Sinta Pardede, David M. Paterson, Raphael Pelissier, Josep Penuelas, Alejandro Perez-Matus, Oscar Pizarro, Pomati. Francesco, Eric Post, Herbert H.T. Prins, John C. Priscu, Pieter Provoost, Kathleen L. Prudic, Erkki Pulliainen, B. R. Ramesh, Olivia Mendivil Ramos, Andrew Rassweiler, Jose Eduardo Rebelo, Daniel C. Reed, Peter B. Reich, Suzanne M. Remillard, Anthony J. Richardson, J. Paul Richardson, Itai van Rijn, Ricardo Rocha, Victor H. Rivera-Monroy, Christian Rixen, Kevin P. Robinson, Ricardo Ribeiro Rodrigues, Denise de Cerqueira Rossa-Feres, Lars G. Rudstam, Henry Ruhl, Catalina S. Ruz, Erica M. Sampaio, Nancy B. Rybicki, Andrew L. Rypel, Sofia Sal, Beatriz Salgado, Flavio A. M. Santos, Ana Paula Savassi-Coutinho, Sara E. Scanga, Jochen Schmidt, Robert L. Schooley, Fakhrizal Setiawan, Kwang-Tsao Shao, Gaius R. Shaver, Sally Sherman, Thomas W. Sherry, Jacek Sicinski, Caya Sievers, Ana Carolina da Silva, Fernando Rodrigues da Silva, Fabio L. Silveira, Jasper Slingsby, Tracey Smart, Sara J. Snell, Nadejda A. Soudzilovskaia, Gabriel B. G. Souza, Flaviana Maluf Souza, Vinicius Castro Souza, Christopher D. Stallings, Rowan Stanforth, Emily H. Stanley, Jose Mauro Sterza, Maarten Stevens, Rick D. Stuart-Smith, Yzel Rondon Suarez, Sarah Supp, Jorge Yoshio Tamashiro, Sukmaraharja Tarigan, Gary P. Thiede, Simon Thorn, Anne Tolvanen, Maria Theresa Zugliani Toniato, Orjan Totland, Robert R. Twilley, Gediminas Vaitkus, Nelson Valdivia, Martha Isabel Vallejo, Thomas J. Valone, Carl Van Colen, Jan Vanaverbeke, Fabio Venturoli, Hans M. Verheye, Marcelo Vianna, Rui P. Vieira, Tomas Vrska, Con Quang Vu, Lien Van Vu, Robert B. Waide, Conor Waldock, Dave Watts, Sara Webb, Tomasz Wesolowski, Ethan P. White, Claire E. Widdicombe, Dustin Wilgers, Richard S. Williams, Stefan B. Williams, Mark Williamson, Michael R. Willig, Trevor J. Willis, Sonja Wipf, Kerry D. Woods, Eric J. Woehler, Kyle Zawada, Michael L. Zettler
2018, Global Ecology and Biogeography (27) 760-786
MotivationThe BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community-led open-source database of biodiversity...
Groundwater discharge characteristics for selected streams within the Loup River Basin, Nebraska, 2014–16
Christopher M. Hobza, Aaron R. Schepers
2018, Scientific Investigations Report 2018-5093
Streams in the Loup River Basin are sensitive to groundwater withdrawals because of the close hydrologic connection between groundwater and surface water. Groundwater discharge is the primary component of streamflow in the Loup River Basin and constitutes more than 90 percent of streamflow in the central part of the Sand...
Preliminary groundwater salinity mapping near selected oil fields using historical water-sample data, central and southern California
Loren F. Metzger, Matthew K. Landon
2018, Scientific Investigations Report 2018-5082
The distribution of groundwater salinity was mapped for 31 oil fields and adjacent aquifers and summarized by 8 subregions across major oil-producing areas of central and southern California. The objectives of this study were to describe the distribution of groundwater near oil fields having total dissolved solids less than 10,000...
Survival, travel time, and utilization of Yolo Bypass, California, by outmigrating acoustic-tagged late-fall Chinook salmon
Adam C. Pope, Russell W. Perry, Dalton J. Hance, Hal C. Hansel
2018, Open-File Report 2018-1118
Juvenile Chinook salmon (Oncorhynchus tshawytscha) migrating through California's Sacramento-San Joaquin River Delta toward the Pacific Ocean face numerous challenges to their survival. The Yolo Bypass is a broad floodplain of the Sacramento River that floods in about 70 percent of years in response to large, uncontrolled runoff events. As...
Evaluation of sockeye salmon after passage through an innovative upstream fish-passage system at Cle Elum Dam, Washington, 2017
Tobias J. Kock, Scott D. Evans, Amy C. Hansen, Russell W. Perry, Hal C. Hansel, Philip V. Haner, Ryan G. Tomka
2018, Open-File Report 2018-1116
Executive SummaryThe Bureau of Reclamation (Reclamation) and the Washington State Department of Ecology (Ecology), working with the Yakima River Basin Water Enhancement Project Workgroup (composed of representatives of the Yakama Nation; Federal, State, county, and city governments; environmental organizations; and irrigation districts), developed the Yakima Basin Integrated Plan (Integrated...
Monitoring breeding and migration of neotropical migratory birds at Naval Base Coronado, Remote Training Site, Warner Springs, San Diego County, California, 5-year summary, 2013–17
Suellen Lynn, Katie A. Hall, Melanie C. Madden, Barbara E. Kus
2018, Open-File Report 2018-1112
We operated a bird banding station on the Naval Base Coronado, Remote Training Site, Warner Springs (RTSWS), in northeastern San Diego County, California, during the bird breeding season (spring/summer) from 2013 to 2017 and during migration (fall) from 2013 to 2016. The station was established in spring 2013 as...
Refinement of a regression-based method for prediction of flow-duration curves of daily streamflow in the conterminous United States
Thomas M. Over, William H. Farmer, Amy M. Russell
2018, Scientific Investigations Report 2018-5072
Regional regression is a common tool used to estimate daily flow-duration curves (FDCs) at ungaged locations. In this report, several refinements to a particular implementation of the regional regression method for estimating FDCs are evaluated by consideration of different methodological options through a leave-one-out cross-validation procedure in the 19 major...
The Holbrook Lineaments: The geophysical boundary zone between the Proterozoic Mazatzal and Yavapai Provinces, southwest USA
Mark E. Gettings
2018, Book chapter, Horizons in earth science research
A horizontal gradient analysis of the isostatic gravity and aeromagnetic anomaly grids of the NewMexico-Arizona-southernCalifornia area was carried out, focused on eastern Arizona and western New Mexico, to define the transitional boundary between the Proterozoic Yavapai province to the west and the Mazatzal province to the east. The two provinces...
Subseasonal variations in marine reservoir age from pre-bomb Donax obesulus and Protothaca asperrima shell carbonate
Miguel F. Etayo-Cadavid, C. Fred T. Andrus, Kevin B. Jones, Gregory W. L. Hodgins
2018, Chemical Geology (526) 110-116
Two Donax obesulus and two Protothaca asperrima shells collected prior to the nuclear testing of the 1950's were micromilled at sub-seasonal resolution to yield new reservoir effect (ΔR) estimates for the coast of Peru. Shells from northern (4°40′S to 8°14′S) and central (13°52′S) Peru produced ΔR values of 123 ± 50 and 110 ± 49 years respectively. We found...
U.S. Geological Survey response to white-nose syndrome in bats
M. Camille Hopkins, Suzanna C. Soileau
2018, Fact Sheet 2018-3020
OverviewSince its discovery in 2007, the fungal disease known as white-nose syndrome (WNS) has killed more than six million bats. Ten of 47 bat species have been affected by WNS across 32 States and 5 Canadian Provinces. The cold-growing fungus (Pseudogymnoascus destructans) that causes WNS infects skin covering the muzzle,...
Prevalence of seismic rate anomalies preceding volcanic eruptions in Alaska
Jeremy D. Pesicek, John Wellik, Stephanie Prejean, Sarah E. Ogburn
2018, Frontiers in Earth Science (6)
Seismic rate increases often precede eruptions at volcanoes worldwide. However, many eruptions occur without such precursors. Additionally, identifying seismic rate increases near volcanoes with high levels of background seismicity is non-trivial and many periods of elevated seismicity occur without ensuing eruptions, limiting their usefulness for forecasting in some cases. Although...
The influence of different deep-sea coral habitats on sediment macrofaunal community structure and function
Jill R. Bourque, Amanda W.J. Demopoulos
2018, PeerJ (6) 1-32
Deep-sea corals can create a highly complex, three-dimensional structure that facilitates sediment accumulation and influences adjacent sediment environments through altered hydrodynamic regimes. Infaunal communities adjacent to different coral types, including reef-building scleractinian corals and individual colonies of octocorals, are known to exhibit higher macrofaunal densities and distinct community structure when...
Discontinuities and functional resilience of large river fish assemblages
Kristen L. Bouska
2018, Ecological Applications (9)
Functional composition of communities across scales is increasingly used to infer resilience of biotic communities to environmental change. To assess the relevance of these concepts to management of large rivers, analyses were applied to fish community data of the Upper Mississippi River. First, to evaluate whether...
Prioritization of oil and gas fields for regional groundwater monitoring based on a preliminary assessment of petroleum resource development and proximity to California’s groundwater resources
Tracy Davis, Matthew K. Landon, George L. V Bennett V
2018, Scientific Investigations Report 2018-5065
The California State Water Resources Control Board initiated a regional monitoring program in July 2015 to determine where and to what degree groundwater quality may be adversely impacted by oil and gas development activities. A key issue in the implementation of the regional groundwater monitoring program is that each year,...
Findings from a preliminary investigation of the effects of aquatic habitat (water) availability on giant gartersnake (Thamnophis gigas) demography in the Sacramento Valley, California, 2014–17
Jonathan P. Rose, Julia S. M. Ersan, Gabriel A. Reyes, K. Benjamin Gustafson, Alexandria M. Fulton, Kristen J. Fouts, Raymund F. Wack, Glenn D. Wylie, Michael L. Casazza, Brian J. Halstead
2018, Open-File Report 2018-1114
The giant gartersnake (Thamnophis gigas) is a semi-aquatic species of snake precinctive to the Central Valley of California. Because the Central Valley has experienced a substantial loss of wetland habitat, giant gartersnake populations are largely found in aquatic habitats associated with rice agriculture. In dry years, less water may be...
Quality-assurance plan for groundwater activities, U.S. Geological Survey Dakota Water Science Center
Joshua F. Valder, Janet M. Carter, Steven M. Robinson, Christopher D. Laveau, Joel A. Petersen
2018, Open-File Report 2018-1103
As the Nation’s principal earth-science information agency, the U.S. Geological Survey (USGS) is depended upon to collect accurate data and produce factual and impartial interpretive reports. Methods for data collection and analysis that were developed by the USGS have become standard techniques used by numerous Federal, State, and local agencies...
Coeur d’Alene Basin Environmental Monitoring Program, surface water, northern Idaho—Annual data summary, water year 2017
Lauren M. Zinsser
2018, Open-File Report 2018-1113
Streams within the Coeur d’Alene River drainage basin in northern Idaho have been extensively affected by historical mining activities and are subject to ongoing remedial actions as part of the Bunker Hill Mining & Metallurgical Complex Superfund Site. The U.S. Geological Survey (USGS) operates 12 real-time streamgages and collects...
Geoelectric hazard maps for the Pacific Northwest
Jeffrey J. Love, Greg M. Lucas, Anna Kelbert, Paul A. Bedrosian
2018, Space Weather (16) 1114-1127
Maps of extreme value, horizontal component geoelectric field amplitude are constructed for the Pacific Northwest United States (and parts of neighboring Canada). Multidecade long geoelectric field time series are calculated by convolving Earth surface impedance tensors from 71 discrete magnetotelluric survey sites across the region with historical 1‐min (2‐min Nyquist)...
