Demographic modelling reveals a history of divergence with gene flow for a glacially tied stonefly in a changing post-Pleistocene landscape
Scott Hotaling, Clint C. Muhlfeld, J. Joseph Giersch, Omar Ali, Steve Jordan, Michael R. Miller, Gordon Luikart, David W. Weisrock
2018, Journal of Biogeography (45) 304-317
AimClimate warming is causing extensive loss of glaciers in mountainous regions, yet our understanding of how glacial recession influences evolutionary processes and genetic diversity is limited. Linking genetic structure with the influences shaping it can improve understanding of how species respond to environmental change. Here, we used genome-scale data and...
Shrubland carbon sink depends upon winter water availability in the warm deserts of North America
Joel A. Biederman, Russell L. Scott, John A. Arnone, Richard L. Jasoni, Marcy E. Litvak, Michael T. Moreo, Shirley A. Papuga, Guillermo E. Ponce-Campos, Adam P. Schreiner-McGraw, Enrique R. Vivoni
2018, Agricultural and Forest Meteorology (249) 407-419
Global-scale studies suggest that dryland ecosystems dominate an increasing trend in the magnitude and interannual variability of the land CO2 sink. However, such model-based analyses are poorly constrained by measured CO2 exchange in open shrublands, which is the most common global land cover type, covering ∼14% of Earth’s surface. Here we evaluate...
The impact of lidar elevation uncertainty on mapping intertidal habitats on barrier islands
Nicholas M. Enwright, Lei Wang, Sinéad M. Borchert, Richard H. Day, Laura C. Feher, Michael J. Osland
2018, Remote Sensing (10) 1-18
While airborne lidar data have revolutionized the spatial resolution that elevations can be realized, data limitations are often magnified in coastal settings. Researchers have found that airborne lidar can have a vertical error as high as 60 cm in densely vegetated intertidal areas. The uncertainty of digital elevation models is...
Accurate ocean bottom seismometer positioning method inspired by multilateration technique
Omar Benazzouz, Luis M. Pinheiro, Luis M. A. Matias, Alexandra Afilhado, Daniel Herold, Seth S. Haines
2018, Mathematical Geosciences (50) 569-584
The positioning of ocean bottom seismometers (OBS) is a key step in the processing flow of OBS data, especially in the case of self popup types of OBS instruments. The use of first arrivals from airgun shots, rather than relying on the acoustic transponders mounted in the OBS, is becoming...
Hypocenter relocation along the Sunda arc in Indonesia, using a 3D seismic velocity model
Andri Dian Nugraha, Hasbi A. Shiddiqi, Sri Widiyantoro, Clifford H. Thurber, Jeremy D. Pesicek, Haijiang Zhang, Samsul H. Wiyono, Mohamad Ramadhan, Wandano, Mahsyur Irsyam
2018, Seismological Research Letters (89) 603-612
The tectonics of the Sunda arc region is characterized by the junction of the Eurasian and Indo‐Australian tectonic plates, causing complex dynamics to take place. High‐seismicity rates in the Indonesian region occur due to the interaction between these tectonic plates. The availability of a denser network of seismometers after the...
Volcanic ash activates the NLRP3 inflammasome in murine and human macrophages
David Damby, Claire J. Horwell, Peter J. Baxter, Ulrich Kueppers, Max Schnurr, Donald B. Dingwell, Peter Duewell
2018, Frontiers in Immunology (8)
Volcanic ash is a heterogeneous mineral dust that is typically composed of a mixture of amorphous (glass) and crystalline (mineral) fragments. It commonly contains an abundance of the crystalline silica (SiO2) polymorph cristobalite. Inhalation of crystalline silica can induce inflammation by stimulating the NLRP3 inflammasome, a cytosolic receptor complex that...
Uptake and distribution of organo-iodine in deep-sea corals
Nancy G. Prouty, E. Brendan Roark, Leslye M. Mohon, Ching-Chih Chang
2018, Journal of Environmental Radioactivity (187) 122-132
Understanding iodine concentration, transport, and bioavailability is essential in evaluating iodine's impact to the environment and its effectiveness as an environmental biogeotracer. While iodine and its radionuclides have proven to be important tracers in geologic and biologic studies, little is known about transport of this element to the deep sea...
Floodplain trapping and cycling compared to streambank erosion of sediment and nutrients in an agricultural watershed
Jaimie Gillespie, Gregory E. Noe, Cliff R. Hupp, Allen C. Gellis, Edward R. Schenk
2018, Journal of the American Water Resources Association (54) 565-582
Floodplains and streambanks can positively and negatively influence downstream water quality through interacting geomorphic and biogeochemical processes. Few studies have measured those processes in agricultural watersheds. We measured inputs (floodplain sedimentation and dissolved inorganic loading), cycling (floodplain soil nitrogen [N] and phosphorus [P] mineralization), and losses (bank erosion) of sediment,...
Molecular testing of adult Pacific salmon and trout (Oncorhynchus spp.) for several RNA viruses demonstrates widespread distribution of piscine orthoreovirus in Alaska and Washington
Maureen K. Purcell, Rachel L. Thompson, Joy Evered, John Kerwin, Ted R. Meyers, Bruce Stewart, James Winton
2018, Journal of Fish Diseases (41) 347-355
This research was initiated in conjunction with a systematic, multiagency surveillance effort in the United States (U.S.) in response to reported findings of infectious salmon anaemia virus (ISAV) RNA in British Columbia, Canada. In the systematic surveillance study reported in a companion paper, tissues from various salmonids taken from Washington...
Virulence of a chimeric recombinant infectious haematopoietic necrosis virus expressing the spring viraemia of carp virus glycoprotein in salmonid and cyprinid fish
Eveline J. Emmenegger, Stephane Biacchesi, Emilie Merour, Jolene. A Glenn, Alexander D. Palmer, Michel Bremont, Gael Kurath
2018, Journal of Fish Diseases (41) 67-78
Infectious haematopoietic necrosis virus (IHNV) and spring viraemia of carp virus (SVCV) are both rhabdoviruses of fish, listed as notifiable disease agents by the World Organization for Animal Health. Recombinant rhabdoviruses with heterologous gene substitutions have been engineered to study genetic determinants and assess the potential of these recombinant viruses...
Macroecological patterns of sexual size dimorphism in turtles of the world
Mickey Agha, Joshua R. Ennen, A. Justin Nowakowski, Jeffrey E. Lovich, Sarah C. Sweat, Brian D. Todd
2018, Journal of Evolutionary Biology (31) 336-345
Sexual size dimorphism (SSD) is a well-documented phenomenon in both plants and animals; however, the ecological and evolutionary mechanisms that drive and maintain SSD patterns across geographic space at regional and global scales are understudied, especially for reptiles. Our goal was to examine geographic variation of turtle SSD and to...
Quaternary sea-level history and the origin of the northernmost coastal aeolianites in the Americas: Channel Islands National Park, California, USA
Daniel R. Muhs, Jeffrey S. Pigati, R. Randall Schumann, Gary L. Skipp, Naomi Porat, Stephen B. DeVogel
2018, Palaeogeography, Palaeoclimatology, Palaeoecology (491) 38-76
Along most of the Pacific Coast of North America, sand dunes are dominantly silicate-rich. On the California Channel Islands, however, dunes are carbonate-rich, due to high productivity offshore and a lack of dilution by silicate minerals. Older sands on the Channel Islands contain enough carbonate to be cemented into aeolianite....
Population genomic analysis suggests strong influence of river network on spatial distribution of genetic variation in invasive saltcedar across the southwestern United States
Soo-Rang Lee, Yeong-Seok Jo, Chan-Ho Park, Jonathan M. Friedman, Matthew S. Olson
2018, Molecular Ecology (27) 636-646
Understanding the complex influences of landscape and anthropogenic elements that shape the population genetic structure of invasive species provides insight into patterns of colonization and spread. The application of landscape genomics techniques to these questions may offer detailed, previously undocumented insights into factors influencing species invasions. We investigated the spatial...
Making ecological models adequate
Wayne M. Getz, Charles R. Marshall, Colin J. Carlson, Luca Giuggioli, Sadie J. Ryan, Stephanie S. Romanach, Carl Boettiger, Samuel D. Chamberlain, Laurel Larsen, Paolo D'Odorico, David O’Sullivan
2018, Ecology Letters (21) 153-166
Critical evaluation of the adequacy of ecological models is urgently needed to enhance their utility in developing theory and enabling environmental managers and policymakers to make informed decisions. Poorly supported management can have detrimental, costly or irreversible impacts on the environment and society. Here, we examine common issues in ecological...
Relationships between indicators of acid-base chemistry and fish assemblages in streams of the Great Smoky Mountains National Park
Barry P. Baldigo, Matt A. Kulp, John S. Schwartz
2018, Ecological Indicators (88) 465-484
The acidity of many streams in the Great Smoky Mountains National Park (GRSM) has increased significantly since pre-industrial (∼1850) times due to the effects of highly acidic atmospheric deposition in poorly buffered watersheds. Extensive stream-monitoring programs since 1993 have shown that fish and macroinvertebrate assemblages have been adversely affected in...
Year-round presence of neonicotinoid insecticides in tributaries to the Great Lakes, USA
Michelle L. Hladik, Steven R. Corsi, Dana W. Kolpin, Austin K. Baldwin, Brett R. Blackwell, Jenna E. Cavallin
2018, Environmental Pollution (235) 1022-1029
To better characterize the transport of neonicotinoid insecticides to the world's largest freshwater ecosystem, monthly samples (October 2015–September 2016) were collected from 10 major tributaries to the Great Lakes, USA. For the monthly tributary samples, neonicotinoids were detected in every month sampled and five of the six target neonicotinoids were...
Quarterly wildlife mortality report January 2018
Bryan J. Richards, Daniel A. Grear, Anne Ballmann, Robert J. Dusek, Robert Kaler, Kathy Kuletz
2018, Wildlife Disease Association Newsletter
No abstract available....
Juvenile coho salmon growth and health in streams across an urbanization gradient
Andrew R. Spanjer, Patrick W. Moran, Kimberly Larsen, Lisa Wetzel, Adam G. Hansen, David A. Beauchamp
2018, Science of the Total Environment (625) 1003-1012
Expanding human population and urbanization alters freshwater systems through structural changes to habitat, temperature effects from increased runoff and reduced canopy cover, altered flows, and increased toxicants. Current stream assessments stop short of measuring health or condition of species utilizing these freshwater habitats and fail to link specific stressors mechanistically...
Why large cells dominate estuarine phytoplankton
James E. Cloern
2018, Limnology and Oceanography (63) S392-S409
Surveys across the world oceans have shown that phytoplankton biomass and production are dominated by small cells (picoplankton) where nutrient concentrations are low, but large cells (microplankton) dominate when nutrient-rich deep water is mixed to the surface. I analyzed phytoplankton size structure in samples collected over 25 yr in San...
Wild-harvested venison yields and sharing by Michigan deer hunters
Amber D. Goguen, Shawn J. Riley, John F. Organ, Brent A. Rudolph
2018, Human Dimensions of Wildlife (23) 197-212
An increased societal focus on wildlife as food and recent policy deliberations regarding legal markets for wild-harvested meat are encouraging wildlife managers and researchers to examine the amount, use, and distribution of meat yielded through recreational hunting. We used responses to questions on the Michigan Deer Harvest Study to estimate...
Unraveling the dynamics of magmatic CO2 degassing at Mammoth Mountain, California
Loic Pfeiffer, Christoph Wanner, Jennifer L. Lewicki
2018, Earth and Planetary Science Letters (484) 318-328
The accumulation of magmatic CO2 beneath low-permeability barriers may lead to the formation of CO2-rich gas reservoirs within volcanic systems. Such accumulation is often evidenced by high surface CO2 emissions that fluctuate over time. The temporal variability in surface degassing is believed in part to reflect a complex interplay between deep magmatic...
The relative importance of intrinsic and extrinsic drivers to population growth vary among local populations of Greater Sage-Grouse: An integrated population modeling approach
Peter S. Coates, Brian G. Prochazka, Mark A. Ricca, Brian J. Halstead, Michael L. Casazza, Erik J. Blomberg, Brianne E. Brussee, Lief Wiechman, Joel Tebbenkamp, Scott C. Gardner, Kerry P. Reese
2018, The Auk (135) 240-261
Consideration of ecological scale is fundamental to understanding and managing avian population growth and decline. Empirically driven models for population dynamics and demographic processes across multiple spatial scales can be powerful tools to help guide conservation actions. Integrated population models (IPMs) provide a framework for better parameter estimation by unifying...
Snow sublimation in mountain environments and its sensitivity to forest disturbance and climate warming
Graham A. Sexstone, David W. Clow, Steven R. Fassnacht, Glen E. Liston, Christopher A. Hiemstra, John F. Knowles, Colin A. Penn
2018, Water Resources Research (54) 1191-1211
Snow sublimation is an important component of the snow mass balance, but the spatial and temporal variability of this process is not well understood in mountain environments. This study combines a process‐based snow model (SnowModel) with eddy covariance (EC) measurements to investigate (1) the spatio‐temporal variability of simulated snow sublimation...
Winter swarming behavior by the exotic cladoceran Daphnia lumholtzi Sars, 1885 in a Kentucky (USA) reservoir
John R. Beaver, Thomas R. Renicker, Claudia E. Tausz, Jade L. Young, Jennifer C. Thomason, Zachary L. Wolf, Amber L. Russell, Mac A. Cherry, Kyle C. Scotese, Dawn T. Koenig
2018, BioInvasions Records (7) 43-50
We describe swarming behavior in the invasive cladoceran Daphnia lumholtzi Sars, 1885 in a Kentucky, USA, reservoir during winter 2017. The taxon is a highly successful tropical invader and has spread throughout the lower latitude systems in the USA since its discovery in 1991. Other than a few isolated reports,...
Accommodating state shifts within the conceptual framework of the wetland continuum
David M. Mushet, Owen P. McKenna, James W. LaBaugh, Ned H. Euliss Jr., Donald O. Rosenberry
2018, Wetlands (38) 647-651
The Wetland Continuum is a conceptual framework that facilitates the interpretation of biological studies of wetland ecosystems. Recently summarized evidence documenting how a multi-decadal wet period has influenced aspects of wetland, lake and stream systems in the southern prairie-pothole region of North America has revealed the potential for wetlands to...