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Using genetic pedigree reconstruction to estimate effective spawner abundance from redd surveys: an example involving Pacific lamprey (Entosphenus tridentatus)
S.L. Whitlock, L.D. Schultz, Carl B. Schreck, J.E. Hess
2017, Canadian Journal of Fisheries and Aquatic Sciences (74) 1646-1653
Redd surveys are a commonly used technique for indexing the abundance of sexually mature fish in streams; however, substantial effort is often required to link redd counts to actual spawner abundance. In this study, we describe how genetic pedigree reconstruction can be used to estimate effective spawner abundance in a...
Future of Pacific salmon in the face of environmental change: Lessons from one of the world's remaining productive salmon regions
Erik R. Schoen, Mark S. Wipfli, Jamie Trammell, Daniel J. Rinella, Angelica L. Floyd, Jess Grunblatt, Molly D. McCarthy, Benjamin E. Meyer, John M. Morton, James E. Powell, Anupma Prakash, Matthew N. Reimer, Svetlana L. Stuefer, Horacio Toniolo, Brett M. Wells, Frank D. W. Witmer
2017, Fisheries (42) 538-553
Pacific salmon Oncorhynchus spp. face serious challenges from climate and landscape change, particularly in the southern portion of their native range. Conversely, climate warming appears to be allowing salmon to expand northwards into the Arctic. Between these geographic extremes, in the Gulf of Alaska region, salmon are at historically high abundances but...
Spatial and temporal patterns in golden eagle diets in the western United States, with implications for conservation planning
Geoffrey Bedrosian, James W. Watson, Karen Steenhof, Michael N. Kochert, Charles R. Preston, Brian Woodbridge, Gary E. Williams, Kent R. Keller, Ross H. Crandall
2017, Journal of Raptor Research (51) 347-367
Detailed information on diets and predatory ecology of Golden Eagles (Aquila chrysaetos) is essential to prioritize prey species management and to develop landscape-specific conservation strategies, including mitigation of the effects of energy development across the western United States. We compiled published and unpublished data on Golden Eagle diets to (1)...
Spatially dependent responses of a large-river fish assemblage to bank stabilization and side channels
Ann Marie Reinhold, Robert G. Bramblett, Alexander V. Zale, Geoffrey C. Poole, David W. Roberts
2017, Transactions of the American Fisheries Society (146) 967-982
The alteration of rivers by anthropogenic bank stabilization to prevent the erosion of economically valuable lands and structures has become commonplace. However, such alteration has ambiguous consequences for fish assemblages, especially in large rivers. Because most large, temperate rivers have impoundments, it can be difficult to separate the influences of...
Balancing stability and flexibility in adaptive governance: An analysis of tools available in U.S. environmental law
Robin Kundis Craig, Ahjond S. Garmestani, Craig R. Allen, Craig Anthony Arnold, Hannah E. Birge, Daniel A. DeCaro, Alexander K. Fremier, Hannah Gosnell, Edella Schlager
2017, Ecology and Society (22) 1-15
Adaptive governance must work “on the ground,” that is, it must operate through structures and procedures that the people it governs perceive to be legitimate and fair, as well as incorporating processes and substantive goals that are effective in allowing social-ecological systems (SESs) to adapt to climate change and other...
Diet composition, quality and overlap of sympatric American pronghorn and gemsbok
James W. Cain III, Mindi M. Avery, Colleen A. Caldwell, Laurie B. Abbott, Jerry L. Holechek
2017, Wildlife Biology (2017) 1-10
Species with a long evolutionary history of sympatry often have mechanisms for resource partitioning that reduce competition. However, introduced non-native ungulates often compete with native ungulates and competitive effects can be exacerbated in arid regions due to low primary productivity. Our objectives were to characterize diet composition, quality, and overlap...
Anura—Frogs
Darrel R. Frost, Emily Moriarty Lemmon, Roy W. McDiarmid, Joseph R. Mendelson III
2017, Book chapter, Scientific and Standard English names of amphibians and reptiles of North America north of Mexico, with comments regarding confidence in our understanding (8th)
No abstract available....
Using dissolved carbon dioxide to alter the behavior of invasive round goby
Aaron R. Cupp, John Tix, Justin R. Smerud, Richard A. Erickson, Kim T. Fredricks, Jon Amberg, C. D. Suski, Robert Wakeman
2017, Management of Biological Invasions (8) 567-574
Fisheries managers need effective methods to limit the spread of invasive round goby Neogobius melanostomus in North America. Elevating carbon dioxide (CO2) in water at pinch points of rivers (e.g., inside locks) is one approach showing potential to deter the passage of invasive fishes, such as bigheaded carps Hypophthalmichthys spp., but the effectiveness...
Evaluating spatial and temporal relationships between an earthquake cluster near Entiat, central Washington, and the large December 1872 Entiat earthquake
Thomas M. Brocher, Richard J. Blakely, Brian L. Sherrod
2017, Bulletin of the Seismological Society of America (107) 2380-2393
We investigate spatial and temporal relations between an ongoing and prolific seismicity cluster in central Washington, near Entiat, and the 14 December 1872 Entiat earthquake, the largest historic crustal earthquake in Washington. A fault scarp produced by the 1872 earthquake lies within the Entiat cluster; the locations and areas of...
Hypogene caves of the central Appalachian Shenandoah Valley in Virginia
Daniel H. Doctor, Wil Orndorff
2017, Book chapter, Hypogene karst regions and caves of the world
Several caves in the Shenandoah Valley in Virginia show evidence for early hypogenic conduit development with later-enhanced solution under partly confined phreatic conditions guided by geologic structures. Many (but not all) of these caves have been subsequently invaded by surface waters as a result of erosion and exhumation. Those not...
Optimal control of an invasive species using a reaction-diffusion model and linear programming
Mathieu Bonneau, Fred A. Johnson, Brian J. Smith, Christina M. Romagosa, Julien Martin, Frank J. Mazzotti
2017, Ecosphere (8) 1-17
Managing an invasive species is particularly challenging as little is generally known about the species’ biological characteristics in its new habitat. In practice, removal of individuals often starts before the species is studied to provide the information that will later improve control. Therefore, the locations and the amount of control...
The lethality of hot water and ozone to aquatic invasive species
Riley Buley
2017, Thesis
The spread of Aquatic Invasive Species (AIS) between the Great Lakes and Mississippi River Basin by way of the Chicago Area Waterway System (CAWS) is a pressing concern to resource managers in the Midwest region. Augmenting this spread are watercrafts traveling through the CAWS locks and dams. AIS are able...
Durable terrestrial bedrock predicts submarine canyon formation
Elliot Smith, Noah J. Finnegan, Erich R. Mueller, Rebecca J. Best
2017, Geophysical Research Letters (44) 10332-10340
Though submarine canyons are first-order topographic features of Earth, the processes responsible for their occurrence remain poorly understood. Potentially analogous studies of terrestrial rivers show that the flux and caliber of transported bedload are significant controls on bedrock incision. Here we hypothesize that coarse sediment load could exert a similar...
Transmission routes maintaining a viral pathogen of steelhead trout within a complex multi-host assemblage
Rachel Breyta, Ilana L. Brito, Paige Ferguson, Gael Kurath, Kerry A. Naish, Maureen K. Purcell, Andrew R. Wargo, Shannon L. LaDeau
2017, Ecology and Evolution (7) 8187-8200
This is the first comprehensive region wide, spatially explicit epidemiologic analysis of surveillance data of the aquatic viral pathogen infectious hematopoietic necrosis virus (IHNV) infecting native salmonid fish. The pathogen has been documented in the freshwater ecosystem of the Pacific Northwest of North America since the 1950s, and the current...
Using long-term data to predict fish abundance: the case of Prochilodus lineatus (Characiformes, Prochilodontidae) in the intensely regulated upper Paraná River
Pitagoras A. Piana, Barbara F. Cardoso, Joilson Dias, Luiz C. Gomes, Angelo A. Agostinho, Leandro E. Miranda
2017, Neotropical Ichthyology (15) 1-12
Populations show spatial-temporal fluctuations in abundance, partly due to random processes and partly due to self-regulatory processes. We evaluated the effects of various external factors on the population numerical abundance of curimba Prochilodus lineatus in the upper Paraná River floodplain, Brazil, over a 19-year period. Panel data analysis was applied to examine...
Influence of precipitation and crop germination on resource selection by mule deer (Odocoileus hemionus) in southwest Colorado
Emily M. Carrollo, Heather E. Johnson, Justin W. Fischer, Matthew Hammond, Patricia D. Dorsey, Charles Anderson, Kurt C. Vercauteren, W. David Walter
2017, Scientific Reports (7) 1-9
Mule deer (Odocoileus hemionus) populations in the western United States provide many benefits to local economies but can also cause considerable damage to agriculture, particularly damage to lucrative crops. Limited information exists to understand resource selection of mule deer in response to annual variation in crop rotation and climatic conditions....
A method for quantifying cloud immersion in a tropical mountain forest using time-lapse photography
Maoya Bassiouni, Martha A. Scholl, Angel J. Torres-Sanchez, Sheila F. Murphy
2017, Agricultural and Forest Meteorology (243) 100-112
Quantifying the frequency, duration, and elevation range of fog or cloud immersion is essential to estimate cloud water deposition in water budgets and to understand the ecohydrology of cloud forests. The goal of this study was to develop a low-cost and high spatial-coverage method to detect occurrence of cloud immersion...
Compositional signatures in acoustic backscatter over vegetated and unvegetated mixed sand-gravel riverbeds
Daniel D. Buscombe, Paul E. Grams, Matthew A. Kaplinski
2017, Journal of Geophysical Research F: Earth Surface (122) 1771-1793
Multibeam acoustic backscatter has considerable utility for remote characterization of spatially heterogeneous bed sediment composition over vegetated and unvegetated riverbeds of mixed sand and gravel. However, the use of high-frequency, decimeter-resolution acoustic backscatter for sediment classification in shallow water is hampered by significant topographic contamination of the signal. In mixed...
Isotopic characterization of late Neogene travertine deposits at Barrancas Blancas in the eastern Atacama Desert, Chile
J. Quade, E.T. Rasbury, K.W. Huntington, Adam M. Hudson, H. Vonhof, K. Anchukaitis, Julio L. Betancourt, C. Latorre, M. Pepper
2017, Chemical Geology (466) 41-56
Here we explore the potential of spring-related, surface and subsurface carbonates as an archive of paleoenvironmental change at Barrancas Blancas, located in the broadest and driest sector of the Atacama Desert at 24.5°S. From these deposits we present a new stable isotopic record of paleoenvironmental conditions over portions of the...
A fault‐based model for crustal deformation in the western United States based on a combined inversion of GPS and geologic inputs
Yuehua Zeng, Zheng-Kang Shen
2017, Bulletin of the Seismological Society of America (107) 2597-2612
We develop a crustal deformation model to determine fault‐slip rates for the western United States (WUS) using the Zeng and Shen (2014) method that is based on a combined inversion of Global Positioning System (GPS) velocities and geological slip‐rate constraints. The model consists of six blocks with...
Prey partitioning and use of insects by juvenile sockeye salmon and a potential competitor, threespine stickleback, in Afognak Lake, Alaska
Natura Richardson, Anne H. Beaudreau, Mark S. Wipfli, Heather Finkle
2017, Ecology of Freshwater Fish (26) 586-601
Freshwater growth of juvenile sockeye salmon (Oncorhynchus nerka) depends upon the quality and quantity of prey and interactions with potential competitors in the foraging environment. To a large extent, knowledge about the ecology of lake-rearing juvenile sockeye salmon has emerged from studies of commercially important runs returning to deep nursery...
Surveillance for highly pathogenic influenza A viruses in California during 2014–2015 provides insights into viral evolutionary pathways and the spatiotemporal extent of viruses in the Pacific Americas Flyway
Andrew M. Ramey, Nichola J. Hill, Troy Cline, Magdalena Plancarte, Susan De La Cruz, Michael L. Casazza, Joshua T. Ackerman, Joseph P. Fleskes, T. Winston Vickers, Andrew B. Reeves, Frances Gulland, Christine Fontaine, Diann J. Prosser, Jonathan Runstadler, Walter M. Boyce
2017, Emerging Microbes & Infections (6) 1-10
We used surveillance data collected in California before, concurrent with, and subsequent to an outbreak of highly pathogenic (HP) clade 2.3.4.4 influenza A viruses (IAVs) in 2014–2015 to (i) evaluate IAV prevalence in waterfowl, (ii) assess the evidence for spill-over infections in marine mammals and (iii) genetically characterize low-pathogenic (LP)...
Enhancing hatch rate and survival in laboratory-reared hybrid Devils Hole Pupfish through application of antibiotics to eggs and larvae
Olin Feuerbacher, Scott A. Bonar, Paul J. Barrett
2017, North American Journal of Aquaculture (79) 106-114
We evaluated the effectiveness of four antibiotics in enhancing the hatch rate, larval survival, and adult survival of hybrid Devils Hole Pupfish Cyprinodon diabolis (hybridized with Ash Meadows Amargosa Pupfish C. nevadensis mionectes). Cephalexin (CEX; concentration = 6.6 mg/L of water), chloramphenicol (CAM; 50 mg/L), erythromycin (ERY; 12.5 mg/L), and trimethoprim sulfamethoxazole (TMP-SMX;...
Restricted gene flow between resident Oncorhynchus mykiss and an admixed population of anadromous steelhead
Andrew P. Matala, Brady Allen, Shawn R. Narum, Elaine Harvey
2017, Ecology and Evolution (7) 8349-8362
The species Oncorhynchus mykiss is characterized by a complex life history that presents a significant challenge for population monitoring and conservation management. Many factors contribute to genetic variation in O. mykiss populations, including sympatry among migratory phenotypes, habitat heterogeneity, hatchery introgression, and immigration (stray) rates. The relative influences of these and other factors are contingent...
The story of a Yakima fold and how it informs Late Neogene and Quaternary backarc deformation in the Cascadia subduction zone, Manastash anticline, Washington, USA
Harvey M. Kelsey, Tyler C. Ladinsky, Lydia M. Staisch, Brian L. Sherrod, Richard J. Blakely, Thomas Pratt, William J. Stephenson, Jackson K. Odum, Elmira Wan
2017, Tectonics (36) 2085-2107
The Yakima folds of central Washington, USA, are prominent anticlines that are the primary tectonic features of the backarc of the northern Cascadia subduction zone. What accounts for their topographic expression and how much strain do they accommodate and over what time period? We investigate Manastash anticline, a north vergent...