Using genetic pedigree reconstruction to estimate effective spawner abundance from redd surveys: an example involving Pacific lamprey (Entosphenus tridentatus)
S.L. Whitlock, L.D. Schultz, Carl B. Schreck, J.E. Hess
2017, Canadian Journal of Fisheries and Aquatic Sciences (74) 1646-1653
Redd surveys are a commonly used technique for indexing the abundance of sexually mature fish in streams; however, substantial effort is often required to link redd counts to actual spawner abundance. In this study, we describe how genetic pedigree reconstruction can be used to estimate effective spawner abundance in a...
Network analysis of a regional fishery: Implications for management of natural resources, and recruitment and retention of anglers
Dustin R. Martin, Daizaburo Shizuka, Christopher J. Chizinski, Kevin L. Pope
2017, Fisheries Research (194) 31-41
Angler groups and water-body types interact to create a complex social-ecological system. Network analysis could inform detailed mechanistic models on, and provide managers better information about, basic patterns of fishing activity. Differences in behavior and reservoir selection among angler groups in a regional fishery, the Salt Valley fishery in southeastern...
Balancing stability and flexibility in adaptive governance: An analysis of tools available in U.S. environmental law
Robin Kundis Craig, Ahjond S. Garmestani, Craig R. Allen, Craig Anthony Arnold, Hannah E. Birge, Daniel A. DeCaro, Alexander K. Fremier, Hannah Gosnell, Edella Schlager
2017, Ecology and Society (22) 1-15
Adaptive governance must work “on the ground,” that is, it must operate through structures and procedures that the people it governs perceive to be legitimate and fair, as well as incorporating processes and substantive goals that are effective in allowing social-ecological systems (SESs) to adapt to climate change and other...
Culturally induced range infilling of eastern redcedar: a problem in ecology, an ecological problem, or both?
Aubrey Streit Krug, Daniel R. Uden, Craig R. Allen, Dirac Twidwell
2017, Ecology and Society (22)
The philosopher John Passmore distinguished between (1) “problems in ecology,” or what we might call problems in scientific understanding of ecological change, and (2) “ecological problems,” or what we might call problems faced by societies due to ecological change. The spread of eastern redcedar (Juniperus virginiana) and conversion of the...
Capturing change: the duality of time-lapse imagery to acquire data and depict ecological dynamics
Emma M. Brinley Buckley, Craig R. Allen, Michael Forsberg, Michael Farrell, Andrew J. Caven
2017, Ecology and Society (22) 1-12
We investigate the scientific and communicative value of time-lapse imagery by exploring applications for data collection and visualization. Time-lapse imagery has a myriad of possible applications to study and depict ecosystems and can operate at unique temporal and spatial scales to bridge the gap between large-scale satellite imagery projects and...
Diet composition, quality and overlap of sympatric American pronghorn and gemsbok
James W. Cain III, Mindi M. Avery, Colleen A. Caldwell, Laurie B. Abbott, Jerry L. Holechek
2017, Wildlife Biology (2017) 1-10
Species with a long evolutionary history of sympatry often have mechanisms for resource partitioning that reduce competition. However, introduced non-native ungulates often compete with native ungulates and competitive effects can be exacerbated in arid regions due to low primary productivity. Our objectives were to characterize diet composition, quality, and overlap...
Is the impact of eutrophication on phytoplankton diversity dependent on lake volume/ecosystem size?
Didier L. Baho, Stina Drakare, Richard K. Johnson, Craig R. Allen, David G. Angeler
2017, Journal of Limnology (76) 199-210
Research focusing on biodiversity responses to the interactions of ecosystem size and anthropogenic stressors are based mainly on correlative gradient studies, and may therefore confound size-stress relationships due to spatial context and differences in local habitat features across ecosystems. We investigated how local factors related to anthropogenic stressors (e.g.,eutrophication) interact...
Wastewater disposal and the earthquake sequences during 2016 near Fairview, Pawnee, and Cushing, Oklahoma
Arthur F. McGarr, Andrew J. Barbour
2017, Geophysical Research Letters (44) 9330-9336
Each of the three earthquake sequences in Oklahoma in 2016—Fairview, Pawnee, and Cushing—appears to have been induced by high-volume wastewater disposal within 10 km. The Fairview M5.1 main shock was part of a 2 year sequence of more than 150 events of M3, or greater; the main shock accounted for about half of the...
Streamflow alteration and habitat ramifications for a threatened fish species in the Central United States
Kyle E. Juracek, Ken Eng, Daren M. Carlisle, David M. Wolock
2017, River Research and Applications (33) 993-1003
In the Central United States, the Arkansas darter (Etheostoma cragini) is listed as a threatened fish species by the State of Kansas. Survival of the darter is threatened by loss of habitat caused by changing streamflow conditions, in particular flow depletion. Future management of darter populations and habitats requires an...
Anura—Frogs
Darrel R. Frost, Emily Moriarty Lemmon, Roy W. McDiarmid, Joseph R. Mendelson III
2017, Book chapter, Scientific and Standard English names of amphibians and reptiles of North America north of Mexico, with comments regarding confidence in our understanding (8th)
No abstract available....
Forecasting the (un)productivity of the 2014 M 6.0 South Napa aftershock sequence
Andrea L. Llenos, Andrew J. Michael
2017, Seismological Research Letters (88) 1241-1251
The 24 August 2014 Mw 6.0 South Napa mainshock produced fewer aftershocks than expected for a California earthquake of its magnitude. In the first 4.5 days, only 59 M≥1.8 aftershocks occurred, the largest of which was an M 3.9 that happened a little over two days after the mainshock. We investigate the aftershock productivity of...
238U–230Th–226Ra–210Pb–210Po disequilibria constraints on magma generation, ascent, and degassing during the ongoing eruption of Kīlauea
Guillaume Girard, Mark K. Reagan, Kenneth W. W. Sims, Carl Thornber, Christopher L. Waters, Erin H. Phillips
2017, Journal of Petrology (58) 1199-1226
The timescales of magma genesis, ascent, storage and degassing at Kīlauea volcano, Hawai‘i are addressed by measuring 238U-series radionuclide abundances in lava and tephra erupted between 1982 and 2008. Most analyzed samples represent lavas erupted by steady effusion from Pu‘u ‘Ō‘ō and Kūpahianaha from 1983 to 2008. Also included are samples...
Performance of Irikura recipe rupture model generator in earthquake ground motion simulations with Graves and Pitarka hybrid approach
Arben Pitarka, Robert Graves, Kojiro Irikura, Hiroe Miyake, Arthur Rodgers
2017, Pure and Applied Geophysics (174) 3537-3555
We analyzed the performance of the Irikura and Miyake (Pure and Applied Geophysics 168(2011):85–104, 2011) (IM2011) asperity-based kinematic rupture model generator, as implemented in the hybrid broadband ground motion simulation methodology of Graves and Pitarka (Bulletin of the Seismological Society of America 100(5A):2095–2123, 2010), for simulating ground motion from crustal...
Using dissolved carbon dioxide to alter the behavior of invasive round goby
Aaron R. Cupp, John Tix, Justin R. Smerud, Richard A. Erickson, Kim T. Fredricks, Jon Amberg, C. D. Suski, Robert Wakeman
2017, Management of Biological Invasions (8) 567-574
Fisheries managers need effective methods to limit the spread of invasive round goby Neogobius melanostomus in North America. Elevating carbon dioxide (CO2) in water at pinch points of rivers (e.g., inside locks) is one approach showing potential to deter the passage of invasive fishes, such as bigheaded carps Hypophthalmichthys spp., but the effectiveness...
Transmission routes maintaining a viral pathogen of steelhead trout within a complex multi-host assemblage
Rachel Breyta, Ilana L. Brito, Paige Ferguson, Gael Kurath, Kerry A. Naish, Maureen K. Purcell, Andrew R. Wargo, Shannon L. LaDeau
2017, Ecology and Evolution (7) 8187-8200
This is the first comprehensive region wide, spatially explicit epidemiologic analysis of surveillance data of the aquatic viral pathogen infectious hematopoietic necrosis virus (IHNV) infecting native salmonid fish. The pathogen has been documented in the freshwater ecosystem of the Pacific Northwest of North America since the 1950s, and the current...
Martian cave air-movement via Helmholtz resonance
Kaj E. Williams, Timothy N. Titus, Chris Okubo, Glen E. Cushing
2017, International Journal of Speleology (46) 493-444
Infrasonic resonance has previously been measured in terrestrial caves by other researchers, where Helmholtz resonance has been suggested as the plausible mechanism resulting in periodic wind reversals within cave entrances. We extend this reasoning to possible Martian caves, where we examine the characteristics of four atypical pit craters (APCs) on...
Modeling watershed-scale impacts of stormwater management with traditional versus low impact development design
Stephanie A. Sparkman, Dianna M. Hogan, Kristina G. Hopkins, J. V. Loperfido
2017, Journal of the American Water Resources Association (53) 1081-1094
Stormwater runoff and associated pollutants from urban areas in the greater Chesapeake Bay Watershed (CBW) impair local streams and downstream ecosystems, despite urbanized land comprising only 7% of the CBW area. More recently, stormwater best management practices (BMPs) have been implemented in a low impact development (LID) manner to treat...
Presentation and analysis of a worldwide database of earthquake-induced landslide inventories
Hakan Tanyas, Cees J. van Westen, Kate E. Allstadt, M. Anna Nowicki Jessee, Tolga Gorum, Randall W. Jibson, Jonathan W. Godt, Hiroshi P. Sato, Robert G. Schmitt, Odin Marc, Niels Hovius
2017, Journal of Geophysical Research F: Earth Surface (122) 1991-2015
Earthquake-induced landslide (EQIL) inventories are essential tools to extend our knowledge of the relationship between earthquakes and the landslides they can trigger. Regrettably, such inventories are difficult to generate and therefore scarce, and the available ones differ in terms of their quality and level of completeness. Moreover, access to existing...
Relative abundance of deformed wing virus, Varroa destructor virus 1, and their recombinants in honey bees (Apis mellifera) assessed by kmer analysis of public RNA-Seq data
Robert S. Cornman
2017, Journal of Invertebrate Pathology (149) 44-50
Deformed wing virus (DWV) is a major pathogen of concern to apiculture, and recent reports have indicated the local predominance and potential virulence of recombinants between DWV and a related virus, Varroa destructor virus 1 (VDV). However, little is known about the frequency and titer of VDV and recombinants relative...
Role of a naturally varying flow regime in Everglades restoration
Judson Harvey, Paul R. Wetzel, Thomas E. Lodge, Victor C. Engel, Michael S. Ross
2017, Restoration Ecology (25) S27-S38
The Everglades is a low-gradient floodplain predominantly on organic soil that undergoes seasonally pulsing sheetflow through a network of deepwater sloughs separated by slightly higher elevation ridges. The seasonally pulsing flow permitted the coexistence of ridge and slough vegetation, including the persistence of productive, well-connected sloughs that seasonally concentrated prey...
Prey partitioning and use of insects by juvenile sockeye salmon and a potential competitor, threespine stickleback, in Afognak Lake, Alaska
Natura Richardson, Anne H. Beaudreau, Mark S. Wipfli, Heather Finkle
2017, Ecology of Freshwater Fish (26) 586-601
Freshwater growth of juvenile sockeye salmon (Oncorhynchus nerka) depends upon the quality and quantity of prey and interactions with potential competitors in the foraging environment. To a large extent, knowledge about the ecology of lake-rearing juvenile sockeye salmon has emerged from studies of commercially important runs returning to deep nursery...
Surveillance for highly pathogenic influenza A viruses in California during 2014–2015 provides insights into viral evolutionary pathways and the spatiotemporal extent of viruses in the Pacific Americas Flyway
Andrew M. Ramey, Nichola J. Hill, Troy Cline, Magdalena Plancarte, Susan De La Cruz, Michael L. Casazza, Joshua T. Ackerman, Joseph P. Fleskes, T. Winston Vickers, Andrew B. Reeves, Frances Gulland, Christine Fontaine, Diann J. Prosser, Jonathan Runstadler, Walter M. Boyce
2017, Emerging Microbes & Infections (6) 1-10
We used surveillance data collected in California before, concurrent with, and subsequent to an outbreak of highly pathogenic (HP) clade 2.3.4.4 influenza A viruses (IAVs) in 2014–2015 to (i) evaluate IAV prevalence in waterfowl, (ii) assess the evidence for spill-over infections in marine mammals and (iii) genetically characterize low-pathogenic (LP)...
A fault‐based model for crustal deformation in the western United States based on a combined inversion of GPS and geologic inputs
Yuehua Zeng, Zheng-Kang Shen
2017, Bulletin of the Seismological Society of America (107) 2597-2612
We develop a crustal deformation model to determine fault‐slip rates for the western United States (WUS) using the Zeng and Shen (2014) method that is based on a combined inversion of Global Positioning System (GPS) velocities and geological slip‐rate constraints. The model consists of six blocks with...
Enhancing hatch rate and survival in laboratory-reared hybrid Devils Hole Pupfish through application of antibiotics to eggs and larvae
Olin Feuerbacher, Scott A. Bonar, Paul J. Barrett
2017, North American Journal of Aquaculture (79) 106-114
We evaluated the effectiveness of four antibiotics in enhancing the hatch rate, larval survival, and adult survival of hybrid Devils Hole Pupfish Cyprinodon diabolis (hybridized with Ash Meadows Amargosa Pupfish C. nevadensis mionectes). Cephalexin (CEX; concentration = 6.6 mg/L of water), chloramphenicol (CAM; 50 mg/L), erythromycin (ERY; 12.5 mg/L), and trimethoprim sulfamethoxazole (TMP-SMX;...
Restricted gene flow between resident Oncorhynchus mykiss and an admixed population of anadromous steelhead
Andrew P. Matala, Brady Allen, Shawn R. Narum, Elaine Harvey
2017, Ecology and Evolution (7) 8349-8362
The species Oncorhynchus mykiss is characterized by a complex life history that presents a significant challenge for population monitoring and conservation management. Many factors contribute to genetic variation in O. mykiss populations, including sympatry among migratory phenotypes, habitat heterogeneity, hatchery introgression, and immigration (stray) rates. The relative influences of these and other factors are contingent...