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Not all publications have extents, not all extents are completely accurate
Relative abundance of deformed wing virus, Varroa destructor virus 1, and their recombinants in honey bees (Apis mellifera) assessed by kmer analysis of public RNA-Seq data
Robert S. Cornman
2017, Journal of Invertebrate Pathology (149) 44-50
Deformed wing virus (DWV) is a major pathogen of concern to apiculture, and recent reports have indicated the local predominance and potential virulence of recombinants between DWV and a related virus, Varroa destructor virus 1 (VDV). However, little is known about the frequency and titer of VDV and recombinants relative...
Nearshore fish community
James A. Hoyle, Michael J. Connerton, Dawn E. Dittman, Dimitry Gorsky, Jana R. Lantry, Alastair Mathers, Scott L. Schlueter, Maureen Walsh, Brian Weidel, Michael J. Yuille
2017, Report, The state of Lake Ontario in 2014
Lake Ontario’s nearshore fish community consists of a diverse assemblage of warm- and cool-water species. The “nearshore zone,” loosely separated from the “offshore zones” by the 15-m depth contour, consists of complex habitats spanning a gamut from vast open-coastal areas to sheltered embayments and wetlands. Lake Ontario’s nearshore habitat has...
The story of a Yakima fold and how it informs Late Neogene and Quaternary backarc deformation in the Cascadia subduction zone, Manastash anticline, Washington, USA
Harvey M. Kelsey, Tyler C. Ladinsky, Lydia M. Staisch, Brian L. Sherrod, Richard J. Blakely, Thomas Pratt, William J. Stephenson, Jackson K. Odum, Elmira Wan
2017, Tectonics (36) 2085-2107
The Yakima folds of central Washington, USA, are prominent anticlines that are the primary tectonic features of the backarc of the northern Cascadia subduction zone. What accounts for their topographic expression and how much strain do they accommodate and over what time period? We investigate Manastash anticline, a north vergent...
3-D simulations of M9 earthquakes on the Cascadia Megathrust: Key parameters and uncertainty
Erin Wirth, Arthur D. Frankel, John Vidale, Nasser A. Marafi, William J. Stephenson
2017, Conference Paper, Proceedings of the 11th National Conference in Earthquake Engineering
Geologic and historical records indicate that the Cascadia subduction zone is capable of generating large, megathrust earthquakes up to magnitude 9. The last great Cascadia earthquake occurred in 1700, and thus there is no direct measure on the intensity of ground shaking or specific rupture parameters from seismic recordings. We...
Evaluating a kinematic method for generating broadband ground motions for great subduction zone earthquakes: Application to the 2003 Mw 8.3 Tokachi‐Oki earthquake
Erin A. Wirth, Arthur D. Frankel, John E. Vidale
2017, Bulletin of the Seismological Society of America (107) 1737-1753
We compare broadband synthetic seismograms with recordings of the 2003 Mw">MwMw 8.3 Tokachi‐Oki earthquake to evaluate a compound rupture model, in which slip on the fault consists of multiple high‐stress‐drop asperities superimposed on...
Using dissolved carbon dioxide to alter the behavior of invasive round goby
Aaron R. Cupp, John Tix, Justin R. Smerud, Richard A. Erickson, Kim T. Fredricks, Jon Amberg, C. D. Suski, Robert Wakeman
2017, Management of Biological Invasions (8) 567-574
Fisheries managers need effective methods to limit the spread of invasive round goby Neogobius melanostomus in North America. Elevating carbon dioxide (CO2) in water at pinch points of rivers (e.g., inside locks) is one approach showing potential to deter the passage of invasive fishes, such as bigheaded carps Hypophthalmichthys spp., but the effectiveness...
Compositional signatures in acoustic backscatter over vegetated and unvegetated mixed sand-gravel riverbeds
Daniel D. Buscombe, Paul E. Grams, Matthew A. Kaplinski
2017, Journal of Geophysical Research F: Earth Surface (122) 1771-1793
Multibeam acoustic backscatter has considerable utility for remote characterization of spatially heterogeneous bed sediment composition over vegetated and unvegetated riverbeds of mixed sand and gravel. However, the use of high-frequency, decimeter-resolution acoustic backscatter for sediment classification in shallow water is hampered by significant topographic contamination of the signal. In mixed...
Evaluating spatial and temporal relationships between an earthquake cluster near Entiat, central Washington, and the large December 1872 Entiat earthquake
Thomas M. Brocher, Richard J. Blakely, Brian L. Sherrod
2017, Bulletin of the Seismological Society of America (107) 2380-2393
We investigate spatial and temporal relations between an ongoing and prolific seismicity cluster in central Washington, near Entiat, and the 14 December 1872 Entiat earthquake, the largest historic crustal earthquake in Washington. A fault scarp produced by the 1872 earthquake lies within the Entiat cluster; the locations and areas of...
Biogeography: An interweave of climate, fire, and humans
Michael C. Stambaugh, J. Morgan Varner, Stephen T. Jackson
2017, Book chapter, Ecological restoration and management of longleaf pine Forests
Longleaf pine (Pinus palustris) is an icon of the southeastern United States and has been considered a foundation species in forests, woodlands, and savannas of the region (Schwarz 1907; Platt 1999). Longleaf pine is an avatar for the extensive pine-dominated, fire-dependent ecosystems (Figure 2.1) that provide habitats for thousands of...
Streamflow alteration and habitat ramifications for a threatened fish species in the Central United States
Kyle E. Juracek, Ken Eng, Daren M. Carlisle, David M. Wolock
2017, River Research and Applications (33) 993-1003
In the Central United States, the Arkansas darter (Etheostoma cragini) is listed as a threatened fish species by the State of Kansas. Survival of the darter is threatened by loss of habitat caused by changing streamflow conditions, in particular flow depletion. Future management of darter populations and habitats requires an...
Food-web dynamics and isotopic niches in deep-sea communities residing in a submarine canyon and on the adjacent open slopes
Amanda W.J. Demopoulos, Jennifer McClain-Counts, Steve W. Ross, Sandra Brooke, Furu Mienis
2017, Marine Ecology Progress Series (578) 19-33
Examination of food webs and trophic niches provide insights into organisms' functional ecology, yet few studies have examined trophodynamics within submarine canyons, where the interaction of canyon morphology and oceanography influences habitat provision and food deposition. Using stable isotope analysis and Bayesian ellipses, we documented deep-sea food-web structure and trophic...
Methane in aquifers used for public supply in the United States
Peter B. McMahon, Kenneth Belitz, Jeannie R. B. Barlow, Bryant C. Jurgens
2017, Applied Geochemistry (84) 337-347
In 2013 to 2015, 833 public supply wells in 15 Principal aquifers in the U.S. were sampled to identify which aquifers contained high methane concentrations (>1 mg/L) and determine the geologic, hydrologic, and geochemical conditions associated with high concentrations. This study represents the first national assessment of methane in aquifers used...
Degradation of crude 4-MCHM (4-methylcyclohexanemethanol) in sediments from Elk River, West Virginia
Isabelle M. Cozzarelli, Denise M. Akob, Mary Jo Baedecker, Tracey Spencer, Jeanne B. Jaeschke, Darren S. Dunlap, Adam C. Mumford, Amisha T. Poret-Peterson, Douglas B. Chambers
2017, Environmental Science & Technology (51) 12139-12145
In January 2014, approximately 37 800 L of crude 4-methylcyclohexanemethanol (crude MCHM) spilled into the Elk River, West Virginia. To understand the long-term fate of 4-MCHM, we conducted experiments under environmentally relevant conditions to assess the potential for the 2 primary compounds in crude MCHM (1) to undergo biodegradation and (2)...
Dissolved organic matter compositional change and biolability during two storm runoff events in a small sgricultural watershed
Robert S. Eckard, Brian A. Pellerin, Brian A. Bergamaschi, Philip A. M. Bachand, Sandra M. Bachand, Robert G. M. Spencer, Peter J. Hernes
2017, Journal of Geophysical Research: Biogeosciences (122) 2634-2650
Agricultural watersheds are globally pervasive, supporting fundamentally different organic matter source, composition, and concentration profiles in comparison to natural systems. Similar to natural systems, agricultural storm runoff exports large amounts of organic carbon from agricultural land into waterways. But intense management of upper soil layers, waterway channelization,...
Distribution and abundance of Least Bell’s Vireos (Vireo bellii pusillus) and Southwestern Willow Flycatchers (Empidonax traillii extimus) on the Middle San Luis Rey River, San Diego, southern California—2016 data summary
Lisa D. Allen, Scarlett L. Howell, Barbara E. Kus
2017, Data Series 1065
Executive SummaryWe surveyed for Least Bell’s Vireos (LBVI) (Vireo bellii pusillus) and Southwestern Willow Flycatchers (SWFL) (Empidonax traillii extimus) along the San Luis Rey River, between College Boulevard in Oceanside and Interstate 15 in Fallbrook, California (middle San Luis Rey River), in 2016. Surveys were done from March 30...
Alligator mississippiensis (American Alligator): Novel non-native prey
Ruth M. Elsey, Eric Ledet, Jacoby Carter
2017, Herpetological Review (48) 627-628
American Alligators are opportunistic predators and their food habits have been well studied (Elsey et al. 1992. Proc. Annu. Conf. Southeast. Assoc. Fish Wildl. Agencies 46:57–66, and references therein and below). Composition of A. mississippiensis diet often varies due to regional limitation in prey availability (Neill 1971. The Last of the...
Importance of scale, land cover, and weather on the abundance of bird species in a managed forest
Alexis R. Grinde, Gerald J. Hiemi, Brian R. Sturtevant, Hannah Panci, Wayne E. Thogmartin, Peter Wolter
2017, Forest Ecology and Management (405) 295-308
Climate change and habitat loss are projected to be the two greatest drivers of biodiversity loss over the coming century. While public lands have the potential to increase regional resilience of bird populations to these threats, long-term data are necessary to document species responses to changes in climate and habitat...
Genetic composition and connectivity of the Antillean manatee (Trichechus manatus manatus) in Panama
Edgardo Diaz-Ferguson, Margaret Hunter, Hector M. Guzman
2017, Aquatic Mammals (43) 378-386
Genetic diversity and haplotype composition of the West Indian manatee (Trichechus manatus) population from the San San Pond Sak wetland in Bocas del Toro, Panama was studied using a segment of mitochondrial DNA (D’loop). No genetic information has been published to date for Panamanian populations. Due to the secretive behavior...
Skagit River coho salmon life history model—Users’ guide
Andrea Woodward, Grant Kirby, Scott Morris
2017, Open-File Report 2017-1125
Natural resource management is conducted in the context of multiple anthropogenic stressors and is further challenged owing to changing climate. Experiments to determine the effects of climate change on complex ecological systems are nearly impossible. However, using a simulation model to synthesize current understanding of key ecological processes through...
Flood-inundation maps for the Meramec River at Valley Park and at Fenton, Missouri, 2017
Benjamin J. Dietsch, Jacob N. Sappington
2017, Scientific Investigations Report 2017-5116
Two sets of digital flood-inundation map libraries that spanned a combined 16.7-mile reach of the Meramec River that extends upstream from Valley Park, Missouri, to downstream from Fenton, Mo., were created by the U.S. Geological Survey (USGS) in cooperation with the U.S. Army Corps of Engineers, St. Louis Metropolitan Sewer District, Missouri...
Tracking riverborne sediment and contaminants in Commencement Bay, Washington, using geochemical signatures
Renee K. Takesue, Kathleen E. Conn, Richard S. Dinicola
2017, Open-File Report 2017-1124
Large rivers carry terrestrial sediment, contaminants, and other materials to the coastal zone where they can affect marine biogeochemical cycles and ecosystems. This U.S. Geological Survey study combined river and marine sediment geochemistry and organic contaminant analyses to identify riverborne sediment and associated contaminants at shoreline sites in Commencement Bay,...
California sea otter (Enhydra lutris nereis) census results, Spring 2017
M. Tim Tinker, Brian B. Hatfield
2017, Data Series 1067
The 2017 census of southern sea otters (Enhydra lutris nereis) was conducted between late April and early July along the mainland coast of central California and in April at San Nicolas Island in southern California. The 3-year average of combined counts from the mainland range and San Nicolas Island...
Contaminants of emerging concern in tributaries to the Laurentian Great Lakes: I. Patterns of occurrence
Sarah M. Elliott, Mark E. Brigham, Kathy Lee, Jo A. Banda, Steven J. Choy, Daniel J. Gefell, Thomas A. Minarik, Jeremy N. Moore, Zachary G. Jorgenson
2017, PLoS ONE (12) 1-21
Human activities introduce a variety of chemicals to the Laurentian Great Lakes including pesticides, pharmaceuticals, flame retardants, plasticizers, and solvents (collectively referred to as contaminants of emerging concern or CECs) potentially threatening the vitality of these valuable ecosystems. We conducted a basin-wide study to identify the presence of CECs and...
Phytoforensics—Using trees to find contamination
Jordan L. Wilson
2017, Fact Sheet 2017-3076
The water we drink, air we breathe, and soil we come into contact with have the potential to adversely affect our health because of contaminants in the environment. Environmental samples can characterize the extent of potential contamination, but traditional methods for collecting water, air, and soil samples below the ground...
Long-term trends of surface-water mercury and methylmercury concentrations downstream of historic mining within the Carson River watershed
Eric D. Morway, Carl E. Thodal, Mark C. Marvin-DiPasquale
2017, Environmental Pollution (229) 1006-1018
The Carson River is a vital water resource for local municipalities and migratory birds travelling the Pacific Flyway. Historic mining practices that used mercury (Hg) to extract gold from Comstock Lode ore has left much of the river system heavily contaminated with Hg, a practice that continues in many parts...