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Publication Extents

Not all publications have extents, not all extents are completely accurate
Aligning environmental management with ecosystem resilience: a First Foods example from the Confederated Tribes of the Umatilla Indian Reservation, Oregon, USA
Eric J Quaempts, Krista Jones, Scott J. O’Daniel, Timothy J. Beechie, Geoffrey C. Poole
2018, Ecology and Society (23)
The concept of “reciprocity” between humans and other biota arises from the creation belief of the Confederated Tribes of the Umatilla Indian Reservation (CTUIR). The concept acknowledges a moral and practical obligation for humans and biota to care for and sustain one another, and arises from human gratitude and reverence...
Nitrogen limitation, toxin synthesis potential, and toxicity of cyanobacterial populations in Lake Okeechobee and the St. Lucie River Estuary, Florida, during the 2016 state of emergency event
Benjamin J. Kramer, Timothy W. Davis, Kevin A. Meyer, Barry Rosen, Jennifer Goleski, Gene Oh, Christopher J. Gobler
2018, PLoS ONE (13)
Lake Okeechobee, FL, USA, has been subjected to intensifying cyanobacterial blooms that can spread to the adjacent St. Lucie River and Estuary via natural and anthropogenically-induced flooding events. In July 2016, a large, toxic cyanobacterial bloom occurred in Lake Okeechobee and throughout the St. Lucie River...
Blurred lines: Multiple freshwater and marine algal toxins at the land-sea interface of San Francisco Bay, California
Melissa B. Peacock, Corinne M. Gibble, David B. Senn, James E. Cloern, Raphael M. Kudela
2018, Harmful Algae (73) 138-147
San Francisco Bay (SFB) is a eutrophic estuary that harbors both freshwater and marine toxigenic organisms that are responsible for harmful algal blooms. While there are few commercial fishery harvests within SFB, recreational and subsistence harvesting for shellfish is common. Coastal shellfish are monitored for <a title="Learn more about Domoic acid"...
A framework for modeling scenario-based barrier island storm impacts
Rangley C. Mickey, Joseph W. Long, P. Soupy Dalyander, Nathaniel G. Plant, David M. Thompson
2018, Coastal Engineering (138) 98-112
Methods for investigating the vulnerability of existing or proposed coastal features to storm impacts often rely on simplified parametric models or one-dimensional process-based modeling studies that focus on changes to a profile across a dune or barrier island. These simple studies tend to neglect the impacts to curvilinear or alongshore...
Precision and relative effectiveness of a purse seine for sampling age-0 river herring in lakes
Matthew T. Devine, Allison H. Roy, Andrew R. Whiteley, Benjamin I. Gahagan, Michael P. Armstrong, Adrian Jordaan
2018, North American Journal of Fisheries Management (38) 650-662
Stock assessments for anadromous river herring, collectively Alewife Alosa pseudoharengus and Blueback Herring A. aestivalis, lack adequate demographic information, particularly with respect to early life stages. Although sampling adult river herring is increasingly common throughout their range, currently no standardized, field‐based, analytical methods exist for estimating juvenile abundance in freshwater lakes. The objective...
Non-target effects on songbirds from habitat manipulation for Greater Sage-Grouse: Implications for the umbrella species concept
Jason D. Carlisle, Anna D. Chalfoun, Kurt T. Smith, Jeffery L. Beck
2018, The Condor (120) 439-455
The “umbrella species” concept is a conservation strategy in which creating and managing reserve areas to meet the needs of one species is thought to benefit other species indirectly. Broad-scale habitat protections on behalf of an umbrella species are assumed to benefit co-occurring taxa, but targeted management actions to improve...
Crowding affects health, growth, and behavior in headstart pens for Agassiz's desert tortoise
Jeremy S. Mack, Heather E. Schneider, Kristin H. Berry
2018, Chelonian Conservation and Biology (17) 14-26
Worldwide, scientists have headstarted threatened and endangered reptiles to augment depleted populations. Not all efforts have been successful. For the threatened Agassiz's desert tortoise (Gopherus agassizii), one challenge to recovery is poor recruitment of juveniles into adult populations, and this is being addressed through headstart programs. We evaluated 8 cohorts...
Inferring the absence of an incipient population during a rapid response for an invasive species
Amy A. Yackel Adams, Bjorn Lardner, Adam J Knox, Robert Reed
2018, PLoS ONE
Successful eradication of invasives is facilitated by early detection and prompt onset of control. However, realizing or verifying that a colonization has occurred is difficult for cryptic species especially at low population densities. Responding to the capture or unconfirmed sighting of a cryptic invasive species, and...
Quantitative evaluation of vitrinite reflectance and atomic O/C in coal using Raman spectroscopy and multivariate analysis
Jason S. Lupoi, Luke P Fritz, Paul C. Hackley, Logan Solotky, Amy Weislogel, Steve Schlaegle
2018, Fuel (230) 1-8
Vitrinite reflectance (VRo) is a standard petrographic method for assessing thermal maturity (rank) of coal. The vitrinite reflectance technique, however, requires significant petrographic experience, can be time-consuming, and may be biased by analyst subjectivity. Correlations between coal rank and Raman spectral...
Development and characterization of 12 polymorphic microsatellite loci in the sea sandwort, Honckenya peploides
Megan C. Gravley, George K. Sage, Sandra L. Talbot, Matthew L. Carlson
2018, Journal of Plant Research (131) 879-885
Codominant marker systems are better suited to analyze population structure and assess the source of an individual in admixture analyses. Currently, there is no codominant marker system using microsatellites developed for the sea sandwort, Honckenya peploides (L.) Ehrh., an early colonizer in island systems. We developed and characterized...
Measuring and evaluating ecological flows from streams to regions: Steps towards national coverage
James E. McKenna Jr., Howard W. Reeves, Paul Seelbach
2018, Freshwater Biology (63) 874-890
Living aquatic communities are largely determined and maintained by the volume and quality of flowing waters, both within lotic systems and in receiving waters of coastal systems. However, flow is one of the most frequently and extensively altered features of rivers and streams; alteration effects are likely to be...
Capture efficiency and injury rates of band-tailed pigeons using whoosh nets
Christopher L. Coxen, Daniel P. Collins, Scott A. Carleton
2018, Wilson Journal of Ornithology (130) 321-326
Catching ground feeding birds has typically been accomplished through small, walk-in funnel-style traps. This approach is limited because it requires a bird to find its way into the trap, is biased toward less wary birds, and does not allow targeted trapping of individual birds. As part of a large study...
Incorporating road crossing data into vehicle collision risk models for moose (Alces americanus) in Massachusetts, USA
Katherine Zeller, David Wattles, Stephen Destefano
2018, Environmental Management (62) 518-528
Wildlife–vehicle collisions are a human safety issue and may negatively impact wildlife populations. Most wildlife–vehicle collision studies predict high-risk road segments using only collision data. However, these data lack biologically relevant information such as wildlife population densities and successful road-crossing locations. We overcome this shortcoming with a new method that...
Strategies for effective collaborative manuscript development in interdisciplinary science teams
Samantha K. Oliver, C. Emi Fergus, Nicholas K. Skaff, Tyler Wagner, Pang-Ning Tan, Kendra Spence Cheruvelil, Patricia A. Soranno
2018, Ecosphere (9) 1-13
Science is increasingly being conducted in large, interdisciplinary teams. As team size increases, challenges can arise during manuscript development, where achieving one team goal (e.g., inclusivity) may be in direct conflict with other goals (e.g., efficiency). Here, we present strategies for effective collaborative manuscript development that draw from our experiences...
A tale of two wildfires; testing detection and prediction of invasive species distributions using models fit with topographic and spectral indices
Amanda M. West, Paul H. Evangelista, Catherine S. Jarnevich, Darin Shulte
2018, Landscape Ecology (33) 969-984
ContextDeveloping species distribution models (SDMs) to detect invasive species cover and evaluate habitat suitability are high priorities for land managers.ObjectivesWe tested SDMs fit with different variable combinations to provide guidelines for future invasive species model development based on transferability between...
Stream fish colonization but not persistence varies regionally across a large North American river basin
Kit Wheeler, Seth J. Wenger, Stephen J. Walsh, Zachary P. Martin, Howard L. Jelks, Mary Freeman
2018, Biological Conservation (223) 1-10
Many species have distributions that span distinctly different physiographic regions, and effective conservation of such taxa will require a full accounting of all factors that potentially influence populations. Ecologists recognize effects of physiographic differences in topography, geology and climate on local habitat configurations, and thus the relevance of landscape heterogeneity...
Bioactive contaminants of emerging concern in National Park waters of the northern Colorado Plateau, USA
Rebecca H Weissinger, Brett R. Blackwell, Kristen Keteles, William A. Battaglin, Paul M. Bradley
2018, Science of the Total Environment (636) 910-918
Pharmaceuticals and personal care products (PPCPs), wastewater indicators (WWIs), and pesticides (herein, Contaminants of Emerging Concern [CECs]) have been documented in surface waters throughout the world and have associated risks to aquatic life. While much research has focused on temperate and urbanized watersheds, less is known about CEC presence in...
The influence of sea level rise on the regional interdependence of coastal infrastructure
Ruo-Quian Wang, Mark T. Stacey, Liv M. Herdman, Patrick L. Barnard, Li H. Erikson
2018, Earth's Future (6) 677-688
Sea level rise (SLR) is placing both immediate and long‐term pressures on coastal communities to take protective actions. Projects in the United States, and in many locations throughout the world, generally involve local jurisdictions raising the elevation of shoreline protection elements, with limited or no analysis of the feedback between...
Co‐occurrence dynamics of endangered Lower Keys marsh rabbits and free‐ranging domestic cats: Prey responses to an exotic predator removal program
Michael V. Cove, Beth Gardner, Theodore R. Simons, Allan F. O’Connell
2018, Ecology and Evolution (8) 4042-4052
The Lower Keys marsh rabbit (Sylvilagus palustris hefneri) is one of many endangered endemic species of the Florida Keys. The main threats are habitat loss and fragmentation from sea‐level rise, development, and habitat succession. Exotic predators such as free‐ranging domestic cats (Felis catus) pose an additional threat to these endangered...
Energetic fitness: Field metabolic rates assessed via 3D accelerometry complement conventional fitness metrics
David Gremillet, Amelie Lescroel, Grant Ballard, Katie M. Dugger, Melanie Massaro, Elizabeth L. Porzig, David G. Ainley
2018, Functional Ecology (32) 1203-1213
Evaluating the fitness of organisms is an essential step towards understanding their responses to environmental change. Connections between energy expenditure and fitness have been postulated for nearly a century. However, testing this premise among wild animals is constrained by difficulties in measuring energy expenditure while simultaneously monitoring conventional fitness...
Reproductive frequency and size-dependence of fecundity in the Giant Gartersnake (Thamnophis gigas)
Jonathan P. Rose, Julia Ersan, Glenn D. Wylie, Michael L. Casazza, Brian J. Halstead
2018, Herpetological Conservation and Biology (13) 80-90
How reproductive output changes with age or size is a key life-history trait that can affect which demographic rates most influence population growth. Although many studies have investigated the reproductive ecology of gartersnakes, we know little about reproduction in the threatened Giant Gartersnake, Thamnophis gigas. We used X-radiography to determine reproductive status and...
Using regional scale flow–ecology modeling to identify catchments where fish assemblages are most vulnerable to changes in water availability
Ernie F. Hain;, Jonathan G. Kennen, Peter V. Caldwell, Stacy A.C. Nelson, Ge Sun, Steven G. McNulty
2018, Freshwater Biology (63) 928-945
Streamflow is essential for maintaining healthy aquatic ecosystems and for supporting human water supply needs. Changes in climate, land use and water use practices may alter water availability. Understanding the potential effect of these changes on aquatic ecosystems is critical for long-term water management to maintain a balance between water...
Pharmaceutical manufacturing facility discharges can substantially increase the pharmaceutical load to U.S. wastewaters
Tia-Marie Scott, Patrick J. Phillips, Dana W. Kolpin, Kaitlyn M. Finkelstein, Edward T. Furlong, William T. Foreman, James L. Gray
2018, Science of the Total Environment (636) 69-79
Discharges from pharmaceutical manufacturing facilities (PMFs) previously have been identified as important sources of pharmaceuticals to the environment. Yet few studies are available to establish the influence of PMFs on the pharmaceutical source contribution to wastewater treatment plants (WWTPs) and waterways at the national scale. Consequently, a national network of...
Effect of dynamical phase on the resonant interaction among tsunami edge wave modes
Eric L. Geist
2018, Pure and Applied Geophysics (175) 1341-1354
Different modes of tsunami edge waves can interact through nonlinear resonance. During this process, edge waves that have very small initial amplitude can grow to be as large or larger than the initially dominant edge wave modes. In this study, the effects of dynamical phase are established for a single...
Imaging a crustal low-velocity layer using reflected seismic waves from the 2014 earthquake swarm at Long Valley Caldera, California: The magmatic system roof?
Nori Nakata, David R. Shelly
2018, Geophysical Research Letters (45) 3481-3488
The waveforms generated by the 2014 Long Valley Caldera earthquake swarm recorded at station MLH show clear reflected waves that are often stronger than direct P and S waves. With waveform analyses, we discover that these waves are reflected at the top of a low-velocity body, which may be residual magma...