Analyzing cloud base at local and regional scales to understand tropical montane cloud forest vulnerability to climate change
Ashley E. Van Beusekom, Grizelle Gonzalez, Martha A. Scholl
2017, Atmospheric Chemistry and Physics (17) 7245-7259
The degree to which cloud immersion provides water in addition to rainfall, suppresses transpiration, and sustains tropical montane cloud forests (TMCFs) during rainless periods is not well understood. Climate and land use changes represent a threat to these forests if cloud base altitude rises as a result of regional warming...
Calculation of in situ acoustic sediment attenuation using off-the-shelf horizontal ADCPs in low concentration settings
Dan Haught, Jeremy G. Venditti, Scott Wright
2017, Water Resources Research (53) 5017-5037
The use of “off-the-shelf” acoustic Doppler velocity profilers (ADCPs) to estimate suspended sediment concentration and grain-size in rivers requires robust methods to estimate sound attenuation by suspended sediment. Theoretical estimates of sediment attenuation require a priori knowledge of the concentration and grain-size distribution (GSD), making the method impractical to apply...
Sources and ages of fine-grained sediment to streams using fallout radionuclides in the Midwestern United States
Allen C. Gellis, Christopher C. Fuller, Peter C. Van Metre
2017, Journal of Environmental Management (194) 73-85
Fallout radionuclides, 7Be and 210Pbex, sampled in bed sediment for 99 watersheds in the Midwestern region of the United States and in 15 samples of suspended sediment from 3 of these watersheds were used to partition upland from channel sources and to estimate the age or the time since the surface-derived portion...
Uncertainties in forecasting the response of polar bears to global climate change
David C. Douglas, Todd C. Atwood
Andy Butterworth, editor(s)
2017, Book chapter, Marine animal welfare
Several sources of uncertainty affect how precisely the future status of polar bears (Ursus maritimus) can be forecasted. Foremost are unknowns about the future levels of global greenhouse gas emissions, which could range from an unabated increase to an aggressively mitigated reduction. Uncertainties also arise because different climate...
Reflected stochastic differential equation models for constrained animal movement
Ephraim M. Hanks, Devin S. Johnson, Mevin Hooten
2017, Journal of Agricultural, Biological, and Environmental Statistics (22) 353-372
Movement for many animal species is constrained in space by barriers such as rivers, shorelines, or impassable cliffs. We develop an approach for modeling animal movement constrained in space by considering a class of constrained stochastic processes, reflected stochastic differential equations. Our approach generalizes existing methods for modeling unconstrained animal...
Harvest and group effects on pup survival in a cooperative breeder
David E. Ausband, Michael S. Mitchell, Carisa R. Stansbury, Jennifer L. Stenglein, Lisette P. Waits
2017, Proceedings of the Royal Society B: Biological Sciences (284)
Recruitment in cooperative breeders can be negatively affected by changes in group size and composition. The majority of cooperative breeding studies have not evaluated human harvest; therefore, the effects of recurring annual harvest and group characteristics on survival of young are poorly understood. We evaluated how harvest and groups affect...
The recent warming trend in North Greenland
Anais J. Orsi, Kenji Kawamura, Valerie Masson-Delmotte, Xavier Fettweis, Jason E. Box, Dorthe Dahl-Jensen, Gary D. Clow, Amaelle Landais, Jeffrey P. Severinghaus
2017, Geophysical Research Letters (44) 6235-6243
The Arctic is among the fastest warming regions on Earth, but it is also one with limited spatial coverage of multidecadal instrumental surface air temperature measurements. Consequently, atmospheric reanalyses are relatively unconstrained in this region, resulting in a large spread of estimated 30 year recent warming trends, which limits their use...
Amphibians, pesticides, and the amphibian chytrid fungus in restored wetlands in agricultural landscapes
Rebecca A. Reeves, Clay Pierce, Mark W. Vandever, Erin L. Muths, Kelly L. Smalling
2017, Herpetological Conservation and Biology (12) 68-77
Information on interactions between pesticide exposure and disease prevalence in amphibian populations is limited, especially from field data. Exposure to certain herbicides and insecticides has the potential to decrease the immune response in frogs, which can potentially lead to increased abundance of Batrachochytrium dendrobatidis (Bd) zoospores on individuals and in...
Western bats as a reservoir of novel Streptomyces species with antifungal activity
Paris S. Hamm, Nicole A. Caimi, Diana E. Northup, Ernest W. Valdez, Debbie C. Buecher, Christopher A. Dunlap, David P. Labeda, Shiloh Lueschow, Andrea Porras-Alfaro
2017, Applied and Environmental Microbiology (83) 1-10
At least two-thirds of commercial antibiotics today are derived from Actinobacteria, more specifically from the genus Streptomyces. Antibiotic resistance and new emerging diseases pose great challenges in the field of microbiology. Cave systems, in which actinobacteria are ubiquitous and abundant, represent new opportunities for...
Ecological change drives a decline in mercury concentrations in southern Beaufort Sea polar bears
Melissa A. McKinney, Todd C. Atwood, Sara Pedro, Elizabeth L. Peacock
2017, Environmental Science & Technology (51) 7814-7822
We evaluated total mercury (THg) concentrations and trends in polar bears from the southern Beaufort Sea subpopulation from 2004 to 2011. Hair THg concentrations ranged widely among individuals from 0.6 to 13.3 μg g–1 dry weight (mean: 3.5 ± 0.2 μg g–1). Concentrations differed among sex and age classes: solitary adult...
Temporal genetic population structure and interannual variation in migration behavior of Pacific Lamprey Entosphenus tridentatus
Benjamin J. Clemens, Lance A. Wyss, Rebecca McCoun, Ian Courter, Lawrence Schwabe, Christopher Peery, Carl B. Schreck, Erin K. Spice, Margaret F. Docker
2017, Hydrobiologia (794) 223-240
Studies using neutral loci suggest that Pacific lamprey, Entosphenus tridentatus, lack strong spatial genetic population structure. However, it is unknown whether temporal genetic population structure exists. We tested whether adult Pacific lamprey: (1) show temporal genetic population structure; and (2) migrate different distances between years. We non-lethally sampled lamprey...
Quantile regression of microgeographic variation in population characteristics of an invasive vertebrate predator
Shane R. Siers, Julie A. Savidge, Robert Reed
2017, PLoS ONE (12) 1-19
Localized ecological conditions have the potential to induce variation in population characteristics such as size distributions and body conditions. The ability to generalize the influence of ecological characteristics on such population traits may be particularly meaningful when those traits influence prospects for successful management interventions. To characterize variability in invasive...
Water temperature effects from simulated changes to dam operations and structures in the Middle and South Santiam Rivers, Oregon
Norman L. Buccola
2017, Open-File Report 2017-1063
Green Peter and Foster Dams on the Middle and South Santiam Rivers, Oregon, have altered the annual downstream water temperature profile (cycle). Operation of the dams has resulted in cooler summer releases and warmer autumn releases relative to pre-dam conditions, and that alteration can hinder recovery of various life...
A mosaic-based approach is needed to conserve biodiversity in disturbed freshwater ecosystems
Sean M. Hitchman, Martha E. Mather, Joseph M. Smith, Jane S. Fencl
2017, Global Change Biology (24) 308-321
Conserving native biodiversity in the face of human‐ and climate‐related impacts is a challenging and globally important ecological problem that requires an understanding of spatially connected, organismal‐habitat relationships. Globally, a suite of disturbances (e.g., agriculture, urbanization, climate change) degrades habitats and threatens biodiversity. A mosaic approach (in which connected, interacting...
Responses of juvenile black-tailed prairie dogs (Cynomys ludovicianus) to a commercially produced oral plague vaccine delivered at two doses
Elsa M. Cardenas-Canales, Lisa L. Wolfe, Tripp. Daniel W., Tonie E. Rocke, Rachel C. Abbott, Michael W. Miller
2017, Journal of Wildlife Diseases (53) 916-920
We confirmed safety and immunogenicity of mass-produced vaccine baits carrying an experimental, commercial-source plague vaccine (RCN-F1/V307) expressing Yersinia pestis V and F1 antigens. Forty-five juvenile black-tailed prairie dogs (Cynomys ludovicianus) were randomly divided into three treatment groups (n=15 animals/group). Animals in the first group received one standard-dose vaccine bait (5×107...
Conservation, biodiversity and infectious disease: scientific evidence and policy implications
Hillary S. Young, Chelsea L. Wood, A. Marm Kilpatrick, Kevin D. Lafferty, Charles L. Nunn, Jeffrey R. Vincent
2017, Philosophical Transactions of the Royal Society B: Biological Sciences (372) 1-4
Habitat destruction and infectious disease are dual threats to nature and people. The potential to simultaneously advance conservation and human health has attracted considerable scientific and popular interest; in particular, many authors have justified conservation action by pointing out potential public health benefits . One major focus of this...
Potential for water borne and invertebrate transmission of West Nile virus in the Great Salt Lake, Utah
Melissa Lund, Valerie I. Shearn-Bochsler, Robert J. Dusek, Jan Shivers, Erik K. Hofmeister
2017, Applied and Environmental Microbiology (83)
In November and December of 2013, a large mortality event involving 15,000 - 20,000 eared grebes (Podiceps nigricollis) occurred at the Great Salt Lake (GSL), UT. The onset of the outbreak in grebes was followed by a mortality event in > 86 bald eagles (Haliaeetus leucocephalus). During the die-off, West...
Serosurvey for West Nile virus antibodies in Steller's Jays (Cyanocitta stelleri) captured in coastal California
Elena West, Erik K. Hofmeister, M. Zach Peery
2017, Journal of Wildlife Diseases (53) 582-585
West Nile virus (WNV) was first detected in New York in 1999 and, during its expansion across the continental US, southern Canada, and Mexico, members of the Corvidae (ravens, crows, magpies, and jays) were frequently infected and highly susceptible to the virus. As part of a behavioral study of Steller's...
Scenario Evaluator for Electrical Resistivity survey pre-modeling tool
Neil C. Terry, Frederick D. Day-Lewis, Judith L. Robinson, Lee D. Slater, Keith J. Halford, Andrew Binley, John W. Lane Jr., Dale D. Werkema
2017, Groundwater (55) 885-890
Geophysical tools have much to offer users in environmental, water resource, and geotechnical fields; however, techniques such as electrical resistivity imaging (ERI) are often oversold and/or overinterpreted due to a lack of understanding of the limitations of the techniques, such as the appropriate depth intervals or resolution of the methods....
Linking occupancy surveys with habitat characteristics to estimate abundance and distribution in an endangered cryptic bird
Lisa H. Crampton, Kevin W. Brinck, Kyle E. Pias, Barbara A. P. Heindl, Thomas Savre, Julia S. Diegmann, Eben H. Paxton
2017, Biodiversity and Conservation (26) 1525-1539
Accurate estimates of the distribution and abundance of endangered species are crucial to determine their status and plan recovery options, but such estimates are often difficult to obtain for species with low detection probabilities or that occur in inaccessible habitats. The Puaiohi (Myadestes palmeri) is a cryptic species...
Human infectious disease burdens decrease with urbanization but not with biodiversity
Chelsea L. Wood, Alex McInturff, Hillary S. Young, DoHyung Kim, Kevin D. Lafferty
2017, Philosophical Transactions of the Royal Society B: Biological Sciences (372)
nfectious disease burdens vary from country to country and year to year due to ecological and economic drivers. Recently, Murray et al. (Murray CJ et al. 2012 Lancet 380, 2197–2223. (doi:10.1016/S0140-6736(12)61689-4)) estimated country-level morbidity and mortality associated with a variety of factors, including infectious diseases, for the years...
Predation of freshwater fish in environments with elevated carbon dioxide
Stephen R. Midway, Caleb T. Hasler, Tyler Wagner, C. D. Suski
2017, Marine and Freshwater Research (68) 1585-1592
Carbon dioxide (CO2) in fresh-water environments is poorly understood, yet in marine environments CO2 can affect fish behaviour, including predator–prey relationships. To examine changes in predator success in elevated CO2, we experimented with predatory Micropterus salmoides and Pimephales promelas prey. We used a two-factor fully crossed experimental design; one factor...
Hydrogeologic framework and selected components of the groundwater budget for the upper Umatilla River Basin, Oregon
Nora B. Herrera, Kate Ely, Smita Mehta, Adam J. Stonewall, John C. Risley, Stephen R. Hinkle, Terrence D. Conlon
2017, Scientific Investigations Report 2017-5020
Executive SummaryThis report presents a summary of the hydrogeology of the upper Umatilla River Basin, Oregon, based on characterization of the hydrogeologic framework, horizontal and vertical directions of groundwater flow, trends in groundwater levels, and components of the groundwater budget. The conceptual model of the groundwater flow system integrates available...
Natural infections with pigeon paramyxovirus serotype 1: Pathologic changes in Eurasian collared-doves (Streptopelia decaocto) and rock pigeons (Columba livia) in the United States
Marcos Isidoro Ayza, C.L. Afonso, J.B. Stanton, Susan Knowles, S. Ip, C. LeAnn White, Heather Fenton, M.G. Ruder, A. C. Dolinski, Julia S. Lankton
2017, Veterinary Pathology (54) 695-703
Pigeon paramyxovirus serotype 1 (PPMV-1) is a globally distributed, virulent member of the avian paramyxovirus serotype 1 serogroup that causes mortality in columbiformes and poultry. Following introduction into the United States in the mid-1980s, PPMV-1 rapidly spread causing numerous mortality events in Eurasian collared-doves (Streptopelia decaocto) (ECDOs) and rock pigeons...
Cyanobacteria of the 2016 Lake Okeechobee and Okeechobee Waterway harmful algal bloom
Barry H. Rosen, Timothy W. Davis, Christopher J. Gobler, Benjamin J. Kramer, Keith A. Loftin
2017, Open-File Report 2017-1054
The Lake Okeechobee and the Okeechobee Waterway (Lake Okeechobee, the St. Lucie Canal and River, and the Caloosahatchee River) experienced an extensive harmful algal bloom within Lake Okeechobee, the St. Lucie Canal and River and the Caloosahatchee River in 2016. In addition to the very visible bloom of the cyanobacterium...