The increasingly complex challenge of gas hydrate reservoir simulation
Ray Boswell, Timothy S. Collett, Evshakin Myshakin, Taiwo Ajayi, Yongkoo Seol
2017, Conference Paper, Proceeding of the 9th International Conference on Gas Hydrates
No abstract available....
Unique genome organization of non-mammalian papillomaviruses provides insights into the evolution of viral early proteins
Koenraad Van Doorslaer, Valeria Ruoppolo, Annie Schmidt, Amelie Lescroel, Dennis Jongsomjit, Megan Elrod, Simona Kraberger, Daisy Stainton, Katie M. Dugger, Grant Ballard, David G. Ainley, Arvind Varsani
2017, Virus Evolution (3)
The family Papillomaviridae contains more than 320 papillomavirus types, with most having been identified as infecting skin and mucosal epithelium in mammalian hosts. To date, only nine non-mammalian papillomaviruses have been described from birds (n = 5), a fish (n = 1), a snake (n = 1), and turtles (n = 2). The identification of papillomaviruses in sauropsids and a...
Geomorphology of comet 67P/Churyumov–Gerasimenko
Samuel P. D. Birch, Y. Tang, A. G. Hayes, Randolph L. Kirk, D. Bodewitz, H. Campins, Y. Fernandez, R. de Freitas Bart, N. W. Kutsop, H. Sierks, J. M. Soderblom, S. W. Squyres, J.-B. Vincent
2017, Monthly Notices of the Royal Astronomical Society (469) S50-S67
We present a global geomorphological map of comet 67P/Churyumov–Gerasimenko (67P/C-G) using data acquired by the Rosetta Orbiter’s OSIRIS Narrow Angle Camera. The images used in our study were acquired between 2014 August and 2015 May, before 67P/C-G passed through perihelion. Imagery of the Southern hemisphere was included in our study, allowing us...
Microbial survival strategies in ancient permafrost: insights from metagenomics
Rachel Mackelprang, Alexander Burkert, Monica Haw, Tara Mahendrarajah, Christopher H. Conaway, Thomas A. Douglas, Mark P. Waldrop
2017, The ISME Journal (11) 2305-2318
In permafrost (perennially frozen ground) microbes survive oligotrophic conditions, sub-zero temperatures, low water availability and high salinity over millennia. Viable life exists in permafrost tens of thousands of years old but we know little about the metabolic and physiological adaptations to the challenges presented by life in frozen ground over...
Monitoring water content dynamics of biological soil crusts
Michael H. Young, Lynn F. Fenstermaker, Jayne Belnap
2017, Journal of Arid Environments (142) 41-49
Biological soil crusts (hereafter, “biocrusts”) dominate soil surfaces in nearly all dryland environments. To better understand the influence of water content on carbon (C) exchange, we assessed the ability of dual-probe heat-pulse (DPHP) sensors, installed vertically and angled, to measure changes in near-surface water content. Four DPHP sensors were installed...
Seasonal fecundity and costs to λ are more strongly affected by direct than indirect predation effects across species
Joseph A. LaManna, Thomas E. Martin
2017, Ecology (98) 1829-1838
Increased perceived predation risk can cause behavioral and physiological responses to reduce direct predation mortality, but these responses can also cause demographic costs through reduced reproductive output. Such indirect costs of predation risk have received increased attention in recent years, but the relative importance of direct vs. indirect predation costs...
Physical response of a back-barrier estuary to a post-tropical cyclone
Alexis Beudin, Neil Kamal Ganju, Zafer Defne, Alfredo Aretxabaleta
2017, Journal of Geophysical Research C: Oceans (122) 5888-5904
This paper presents a modeling investigation of the hydrodynamic and sediment transport response of Chincoteague Bay (VA/MD, USA) to Hurricane Sandy using the Coupled Ocean-Atmosphere-Wave-Sediment-Transport (COAWST) modeling system. Several simulation scenarios with different combinations of remote and local forces were conducted to identify the dominant physical processes. While 80% of...
Glacierized headwater streams as aquifer recharge corridors, subarctic Alaska
Anna K. Lilledahl, Anne Gadeke, Shad O’Neel, T. A. Gatesman, T. A. Douglas
2017, Geophysical Research Letters (44) 6876-6885
Arctic river discharge has increased in recent decades although sources and mechanisms remain debated. Abundant literature documents permafrost thaw and mountain glacier shrinkage over the past decades. Here we link glacier runoff to aquifer recharge via a losing headwater stream in subarctic Interior Alaska. Field measurements in Jarvis Creek (634 km2),...
A new species of freshwater eel-tailed catfish of the genus Tandanus (Teleostei: Plotosidae) from coastal rivers of mid-northern New South Wales, Australia
Stuart A. Welsh, Dean R. Jerry, Damien Burrows, Meaghan L. Rourke
2017, Copeia (105) 229-236
Tandanus bellingerensis, new species, is described based on specimens from four river drainages (Bellinger, Macleay, Hastings, and Manning rivers) of the mid-northern coast of New South Wales, Australia. Previously, three species were recognized in the genus Tandanus: T. tropicanus of the wet tropics region of northeast Queensland, T. tandanus of the Murray-Darling drainage and coastal...
Morphological and molecular characterization of Sarcocystis arctica-like sarcocysts from the Arctic fox (Vulpes lagopus) from Alaska, USA
Camila K. Cerqueira-Cezar, Peter C. Thompson, Shiv K. Verma, Joseph Mowery, Rafael Calero-Bernal, Fernando H. Antunes Murata, David R. Sinnett, Caroline R. Van Hemert, Benjamin M. Rosenthal, Jitender P. Dubey
2017, Parasitology Research (116) 1871-1878
The muscles of herbivores commonly harbor sarcocysts of parasites belonging to species in the genus Sarcocystis, but such muscle parasites are rare in carnivores. Here, we report Sarcocystis arctica-like sarcocysts in muscles of Arctic foxes (Vulpes lagopus) from Alaska, USA, for the first time. The tongues of...
Landform features and seasonal precipitation predict shallow groundwater influence on temperature in headwater streams
Zachary C. Johnson, Craig D. Snyder, Nathaniel P. Hitt
2017, Water Resources Research (53) 5788-5812
Headwater stream responses to climate change will depend in part on groundwater‐surface water exchanges. We used linear modeling techniques to partition likely effects of shallow groundwater seepage and air temperature on stream temperatures for 79 sites in nine focal watersheds using hourly air and water temperature measurements collected during summer...
Complex networks of functional connectivity in a wetland reconnected to its floodplain
Laurel G. Larsen, Susan Newman, Colin Saunders, Judson Harvey
2017, Water Resources Research (53) 6089-6108
Disturbances such as fire or flood, in addition to changing the local magnitude of ecological, hydrological, or biogeochemical processes, can also change their functional connectivity—how those processes interact in space. Complex networks offer promise for quantifying functional connectivity in watersheds. The approach resolves connections between nodes in space based on...
Estimating the number of recreational anglers for a given waterbody
Kevin L. Pope, Larkin A. Powell, Brian S. Harmon, Mark A. Pegg, Christopher J. Chizinski
2017, Fisheries Research (191) 69-75
Knowing how many anglers use a given body of water is paramount for understanding components of a fishery related to angling pressure and harvest, yet no study has attempted to provide an estimate of the population size of anglers for a given waterbody. Here, we use information from creel surveys...
Evaluation of genetic population structure of smallmouth bass in the Susquehanna River basin, Pennsylvania
Megan K. Schall, Meredith L. Bartron, Timothy Wertz, Jonathan M. Niles, Cassidy H. Shaw, Tyler Wagner
2017, North American Journal of Fisheries Management (37) 850-861
The Smallmouth Bass Micropterus dolomieu was introduced into the Susquehanna River basin, Pennsylvania, nearly 150 years ago. Since introduction, it has become an economically and ecologically important species that supports popular recreational fisheries. It is also one of the most abundant top predators in the system. Currently, there is no...
Species’ traits help predict small mammal responses to habitat homogenization by an invasive grass
Joseph P. Ceradini, Anna D. Chalfoun
2017, Ecological Applications (27) 1451-1465
Invasive plants can negatively affect native species, however, the strength, direction, and shape of responses may vary depending on the type of habitat alteration and the natural history of native species. To prioritize conservation of vulnerable species, it is therefore critical to effectively predict species’ responses to invasive plants, which...
Recent climate extremes associated with the West Pacific Warming Mode
Chris Funk, Andrew Hoell
2017, Book chapter, Climate extremes: Patterns and mechanisms
Here we analyze empirical orthogonal functions (EOFs) of observations and a 30 member ensemble of Community Earth System Model version 1 (CESM1) simulations, and suggest that precipitation declines in the Greater Horn of Africa (GHA) and the northern Middle East/Southwestern Asia (NME/SWE: Iran, Iraq, Kuwait, Syria, Saudi Arabia north of...
Decadal declines in avian herbivore reproduction: density-dependent nutrition and phenological mismatch in the Arctic
Megan V. Ross, Ray T. Alisaukas, David C. Douglas, Dana K. Kellett
2017, Ecology (98) 1869-1883
A full understanding of population dynamics depends not only on estimation of mechanistic contributions of recruitment and survival, but also knowledge about the ecological processes that drive each of these vital rates. The process of recruitment in particular may be protracted over several years, and can depend on numerous ecological...
Subsurface geometry of the San Andreas fault in southern California: Results from the Salton Seismic Imaging Project (SSIP) and strong ground motion expectations
Gary S. Fuis, Klaus Bauer, Mark R. Goldman, Trond Ryberg, Victoria E. Langenheim, Daniel S. Scheirer, Michael J. Rymer, Joann M. Stock, John A. Hole, Rufus D. Catchings, Robert Graves, Brad T. Aagaard
2017, Bulletin of the Seismological Society of America (107) 1642-1662
The San Andreas fault (SAF) is one of the most studied strike‐slip faults in the world; yet its subsurface geometry is still uncertain in most locations. The Salton Seismic Imaging Project (SSIP) was undertaken to image the structure surrounding the SAF and also its subsurface geometry. We present SSIP studies...
Monitoring land surface albedo and vegetation dynamics using high spatial and temporal resolution synthetic time series from Landsat and the MODIS BRDF/NBAR/albedo product
Zhuosen Wang, Crystal B. Schaaf, Qingson Sun, JiHyun Kim, Angela M. Erb, Feng Gao, Miguel O. Roman, Yun Yang, Shelley Petroy, Jeffrey Taylor, Jeffrey G. Masek, Jeffrey T. Morisette, Xiaoyang Zhang, Shirley A. Papuga
2017, International Journal of Applied Earth Observation and Geoinformation (59) 104-117
Seasonal vegetation phenology can significantly alter surface albedo which in turn affects the global energy balance and the albedo warming/cooling feedbacks that impact climate change. To monitor and quantify the surface dynamics of heterogeneous landscapes, high temporal and spatial resolution synthetic time series of albedo and the enhanced vegetation index...
A database and probabilistic assessment methodology for carbon dioxide enhanced oil recovery and associated carbon dioxide retention in the United States
Peter D. Warwick, Mahendra K. Verma, Emil D. Attanasi, Ricardo A. Olea, Madalyn S. Blondes, Philip Freeman, Sean T. Brennan, Matthew D. Merrill, Hossein Jahediesfanjani, Jacqueline Roueche, Celeste D. Lohr
2017, Energy Procedia (114) 7055-7059
The U.S. Geological Survey (USGS) has developed an assessment methodology for estimating the potential incremental technically recoverable oil resources resulting from carbon dioxide-enhanced oil recovery (CO2-EOR) in reservoirs with appropriate depth, pressure, and oil composition. The methodology also includes a procedure for estimating the CO2 that remains in the reservoir after...
Population dynamics of brown trout (Salmo trutta) in Spruce Creek Pennsylvania: A quarter-century perspective
Gary D. Grossman, Robert F. Carline, Tyler Wagner
2017, Freshwater Biology (62) 1143-1154
We examined the relationship between density-independent and density-dependent factors on the demography of a dense, relatively unexploited population of brown trout in Spruce Creek Pennsylvania between 1985 and 2011.Individual PCAs of flow and temperature data elucidated groups of years with multiple high flow versus multiple low flow...
An “EAR” on environmental surveillance and monitoring: A case study on the use of Exposure–Activity Ratios (EARs) to prioritize sites, chemicals, and bioactivities of concern in Great Lakes waters
Brett R. Blackwell, Gerald T. Ankley, Steven R. Corsi, Laura A. DeCicco, Kieth A. Houck, Richard S. Judson, Shibin Li, Matthew T. Martin, Elizabeth Murphy, Anthony L. Schroeder, Edwin R. Smith, Joe Swintek, Daniel L. Villeneuve
2017, Environmental Science & Technology (51) 8713-8724
Current environmental monitoring approaches focus primarily on chemical occurrence. However, based on concentration alone, it can be difficult to identify which compounds may be of toxicological concern and should be prioritized for further monitoring, in-depth testing, or management. This can be problematic because toxicological characterization is lacking for many emerging...
Life history migrations of adult Yellowstone Cutthroat Trout in the upper Yellowstone River
Brian D. Ertel, Thomas E. McMahon, Todd M. Koel, Robert E. Gresswell, Jason Burckhardt
2017, North American Journal of Fisheries Management (37) 743-755
Knowledge of salmonid life history types at the watershed scale is increasingly recognized as a cornerstone for effective management. In this study, we used radiotelemetry to characterize the life history movements of Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri in the upper Yellowstone River, an extensive tributary that composes nearly half of the...
Nitrogenase activity by biological soil crusts in cold sagebrush steppe ecosystems
Stacy G. Schwabedissen, Kathleen A. Lohse, Sasha C. Reed, Ken A. Aho, Timothy S. Magnuson
2017, Biogeochemistry (134) 57-76
In drylands worldwide, biological soil crusts (BSC) form a thin photosynthetic cover across landscapes, and provide vital benefits in terms of stabilizing soil and fixing nitrogen (N) and carbon (C). Numerous studies have examined the effects of climate and disturbance on BSC functions; however, few have characterized these responses in...
Short-term ecological consequences of collaborative restoration treatments in ponderosa pine forests of Colorado
Jenny S. Briggs, Paula J. Fornwalt, Jonas A. Feinstein
2017, Forest Ecology and Management (395) 69-80
Ecological restoration treatments are being implemented at an increasing rate in ponderosa pine and other dry conifer forests across the western United States, via the USDA Forest Service’s Collaborative Forest Landscape Restoration (CFLR) program. In this program, collaborative stakeholder groups work with National Forests (NFs) to adaptively implement and monitor...
