Seroprevalence, blood chemistry, and patterns of canine parvovirus, distemper virus, plague, and tularemia in free-ranging coyotes (Canis latrans) in northern New Mexico, USA.
Leah M. White, Susan Gifford, Gail Kaufman, Eric Gese, Mark A. Peyton, Robert R. Parmenter, James W. Cain III
2024, Journal of Wildlife Diseases (160) 14-25
Wildlife diseases have implications for ecology, conservation, human health, and health of domestic animals. They may impact wildlife health and population dynamics. Exposure rates of coyotes (Canis latrans) to pathogens such as Yersinia pestis, the cause of plague, may reflect prevalence rates in both rodent prey and human populations. We captured...
Merging integrated population models and individual-based models to project population dynamics of recolonizing species
L.S. Petracca, B. Gardner, B.T. Maletzke, Sarah J. Converse
2024, Biological Conservation (289)
Recolonizing species exhibit unique population dynamics, namely dispersal to and colonization of new areas, that have important implications for management. A resulting challenge is how to simultaneously model demographic and movement processes so that recolonizing species can be accurately projected over time and space. We introduce a framework for spatially...
Hawaiian volcanic ash, an airborne fomite for nontuberculous mycobacteria
Stephanie Dawrs, Ravleen Virdi, Grant Norton, Tamar Elias, Nabeeh Hasan, Schuyler Robinson, Jobel Matriz, L. Elaine Epperson, Cody Glickman, Sean Beagle, James L Crooks, Stephen T. Nelson, Edward Chan, David Damby, Michael Strong, Jennifer Honda
2024, GeoHealth (8)
Nontuberculous mycobacteria (NTM) are environmentally acquired opportunistic pathogens that can cause chronic lung disease. Within the U.S., Hawai'i shows the highest prevalence rates of NTM lung infections. Here, we investigated a potential role for active volcanism at the Kīlauea Volcano located on Hawai'i Island in promoting NTM growth and diversity....
Variable climate-growth relationships of quaking aspen (Populus tremuloides) among Sky Island mountain ranges in the Great Basin, Nevada, USA
Martin Senfeldr, Douglas J. Shinneman, Susan McIlroy, Paul Rogers, R. Justin DeRose
2024, Forest Ecology and Management (554)
The Great Basin is an arid province located in the interior western United States. The region encompasses millions of hectares and quaking aspen (Populus tremuloides Michx.) forests comprise a minor portion of the total area. However, montane aspen forests play a...
The Coastal Carbon Library and Atlas: Open source soil data and tools supporting blue carbon research and policy
James R. Holmquist, David H. Klinges, Michael Lonneman, Jaxine Wolfe, Brandon M. Boyd, Meagan J. Eagle, Jonathan Sanderman, Katherine Todd-Brown, Lauren N. Brown, E. Fay Belshe, Samantha K. Chapman, Ron Corstanje, Christopher N. Janousek, James T. Morris, Gregory E. Noe, Andre S. Rovai, Amanda C. Spivak, Megan Vahsen, Lisamarie Windham-Myers, Kevin D. Kroeger, Patrick Megonigal
2024, Global Change Biology (30)
Quantifying carbon fluxes into and out of coastal soils is critical to meeting greenhouse gas reduction and coastal resiliency goals. Numerous ‘blue carbon’ studies have generated, or benefitted from, synthetic datasets. However, the community those efforts inspired does not have a centralized, standardized database...
Geologic sources and well integrity impact methane emissions from orphaned and abandoned oil and gas wells
Nicholas J. Gianoutsos, Karl B. Haase, Justin E. Birdwell
2024, Science of the Total Environment (912)
The 160-year history of oil and gas drilling in the United States has left a legacy of unplugged orphaned and abandoned wells, some of which are leaking methane and other hazardous chemicals into the environment. The locations of around 120,000 documented orphaned wells are currently known with the number of...
Conventional rare earth element mineral deposits: The global landscape
Nora K. Foley, Robert A. Ayuso
2024, Book chapter, Rare earth metals and minerals industries: Status and prospects
Four conventional mineral deposit types—carbonatite, alkaline igneous, heavy mineral sand, and regolith-hosted ion-adsorption clay deposits—currently supply global markets with the rare earth elements (REEs) and rare earth oxides (REOs) necessary to meet the technological needs of global communities. The unique properties of REEs make them useful in a wide variety...
Energy-related rare earth element sources
Allan Kolker, Liliana Lefticariu, Steven T. Anderson
2024, Book chapter, Rare earth metals and minerals industries: Status and prospects
Energy-related materials such as coal, coal-bearing wastes, and coal combustion products are traditionally thought of as sources or by-products of electric power generation. Increasingly, these materials are considered resources for their content of rare earth elements (REEs) and other useful constituents. In this chapter, we examine the distribution, modes of...
Hydrothermal monazite and xenotime chemistry as genetic discriminators for intrusion-related and orogenic gold deposits: Implications for an orogenic origin of the Pogo gold deposit, Alaska
Ryan D. Taylor, Garth E. Graham, Heather A. Lowers
2024, Mineralium Deposita (59) 949-967
Attempts to geochemically distinguish between metamorphic-hydrothermal systems that form orogenic gold deposits and both reduced and oxidized magmatic-hydrothermal systems using isotopes or metal associations have proven ambiguous, particularly for orogenic gold and reduced intrusion-related gold systems. The absence of conclusive geochemical discriminators and the overlap in...
The 2023 US 50-State National Seismic Hazard Model: Overview and implications
Mark D. Petersen, Allison Shumway, Peter M. Powers, Edward H. Field, Morgan P. Moschetti, Kishor S. Jaiswal, Kevin R. Milner, Sanaz Rezaeian, Arthur D. Frankel, Andrea L. Llenos, Andrew J. Michael, Jason M. Altekruse, Sean Kamran Ahdi, Kyle Withers, Charles Mueller, Yuehua Zeng, Robert E. Chase, Leah M. Salditch, Nico Luco, Kenneth S. Rukstales, Julie A. Herrick, Demi Leafar Girot, Brad T. Aagaard, Adrian Bender, Michael L. Blanpied, Richard W. Briggs, Oliver S. Boyd, Brandon Clayton, Christopher DuRoss, Eileen L. Evans, Peter J. Haeussler, Alexandra Elise Hatem, Kirstie Lafon Haynie, Elizabeth H. Hearn, Kaj M. Johnson, Zachary Alan Kortum, N. Simon Kwong, Andrew James Makdisi, Henry Mason, Daniel McNamara, Devin McPhillips, P. Okubo, Morgan T. Page, Frederick Pollitz, Justin Rubinstein, Bruce E. Shaw, Zheng-Kang Shen, Brian Shiro, James Andrew Smith, William J. Stephenson, Eric M. Thompson, Jessica Ann Thompson Jobe, Erin A. Wirth, Robert C. Witter
2024, Earthquake Spectra (40) 5-88
The US National Seismic Hazard Model (NSHM) was updated in 2023 for all 50 states using new science on seismicity, fault ruptures, ground motions, and probabilistic techniques to produce a standard of practice for public policy and other engineering applications (defined for return periods greater than ∼475...
Operational aspects of Landsat 8 and 9 geometry
Michael J. Choate, Rajagopalan Rengarajan, Nahid Hasan, Alex Denevan, Kathryn Ruslander
2024, Remote Sensing (16)
Landsat 9 (L9) was launched on 27 September 2021. This spacecraft contained two instruments, the Operational Land Imager-2 (OLI-2) and Thermal Infrared Sensor-2 (TIRS-2), that allow for a continuation of the Landsat program and the mission to acquire multi-spectral observations of the globe on a moderate scale. Following a period...
Modular compositional learning improves 1D hydrodynamic lake model performance by merging process-based modeling with deep learning
Robert Ladwig, Arka Daw, Elen A Albright, Cal Buelo, Anuj Karpatne, Michael Frederick Meyer, Abhilash Neog, Paul C. Hanson, Hilary A. Dugan
2024, Journal of Advances in Modeling Earth Systems (16)
Hybrid Knowledge-Guided Machine Learning (KGML) models, which are deep learning models that utilize scientific theory and process-based model simulations, have shown improved performance over their process-based counterparts for the simulation of water temperature and hydrodynamics. We highlight the modular compositional learning (MCL) methodology as a novel design...
A workshop to advance invasive species early detection capacity of The Rapid Environmental DNA Assessment and Deployment Initiative & Network (READI-Net)
Devin Nicole Jones-Slobodian, Kaylin Renee Clements, Adam Sepulveda
2024, Management of Biological Invasions (15) 159-167
Early detection and rapid response (EDRR) can minimize the impacts of invasive species, which cost billions of dollars globally. To bolster EDRR across the United States, the U.S. Department of the Interior is working with the U.S. Geological Survey and other partners to advance a National EDRR Framework that strengthens...
A pragmatic approach for integrating molecular tools into biodiversity conservation
Laura D. Bertola, Anna Bruniche-Olsen, Francine Kershaw, Isa-Rita M. Russo, Anna J. MacDonald, Paul Sunnucks, Michael W. Bruford, Carlos Daniel Cadena, Kyle M. Ewart, Mark de Bruyn, Mark D. B. Eldridge, Richard Frankham, Juan M. Guayasamin, Catherine E. Grueber, Thierry B. Hoareau, Sean M. Hoban, Paul A. Hohenlohe, Margaret Hunter, Antoinette Kotze, Josiah Kuja, Robert C. Lacy, Linda Laikre, Nathan C. Loecker, Mariah H. Meek, Joachim Mergeay, Cinnamon S. Mittan-Moreau, Linda E. Neaves, David O´Brien, Joel W. Ochieng, Rob Ogden, Pablo Orozco-terWengel, Mónica Páez-Vacas, Jennifer Pierson, Katherine Ralls, Robyn E. Shaw, Etotepe A. Sogbohossou, Adam Stow, Tammy Steeves, Cristiano Vernesi, Mrinalini Watsa, Gernot Segelbacher
2024, Conservation Science and Practice (6)
Molecular tools are increasingly applied for assessing and monitoring biodiversity and informing conservation action. While recent developments in genetic and genomic methods provide greater sensitivity in analysis and the capacity to address new questions, they are not equally available to all practitioners: There is considerable...
Matching existing and future native plant materials to disturbance-driven restoration needs
Daniel E. Winkler, Sarah Sterner, John B. Bradford, Adrienne M. Pilmanis, Robert Massatti
2024, Restoration Ecology (32)
Assessing the appropriateness of existing native plant materials can both determine which seed source to utilize for restoration projects, and identify locations for which new seed sources need to be developed. Here, we demonstrate an approach to meet these needs. This method identifies areas...
The effects of estradiol-17β on the sex reversal, survival, and growth of Red Shiner and its use in the development of YY individuals
Chad N. Teal, Daniel J. Schill, Javan Mathias Bauder, Susan B. Fogelson, Kevin Fitzsimmons, William T. Stewart, Melanie Culver, Scott A. Bonar
2024, North American Journal of Aquaculture (86) 110-129
ObjectiveThe Red Shiner Cyprinella lutrensis is one of the most prolific and ecologically destructive invasive fish species in the southwestern United States. The production and release of YY individuals as Trojan sex chromosome carriers can theoretically eradicate invasive fish populations by eventually eliminating phenotypic females.MethodsThe YY...
How long have we been mistaken? Multi-tools shedding light into the systematics of the widespread deep-water genus Madrepora Linnaeus, 1758 (Scleractinia)
Katia C. C. Capel, Carla Zilberberg, Raphael M. Carpes, Cheryl Morrison, Claudia F. Vaga, Andrea M. Quattrini, Randolph Z. B. Quek, Danwei Huang, Stephen D. Cairns, Marcelo V. Kitahara
2024, Molecular Phylogenetics and Evolution (191)
Deep-water coral reefs are found worldwide and harbor biodiversity levels that are comparable to their shallow-water counterparts. However, the genetic diversity and population structure of deep-water species remain poorly explored, and historical taxonomical issues still need to be resolved. Here we used microsatellite markers as well as ultraconserved elements (UCE) and exons to shed...
Usurpation and brooding of Least Tern (Sternula antillarum) chicks by Common Terns (Sterna hirundo)
Jeffery D. Sullivan, Jonathan Irons, Anna Treadway, Ayla McDonough, Alyssa Lee, Amy O’Donnell, Carl R. Callahan, Peter C. McGowan, Diann Prosser
2024, Diversity (16)
While nest usurpation and subsequent incubation of eggs and even brooding of chicks from other species has been reported for Common Terns (Sterna hirundo), such behavior is considered rare. We report an observation of a Common Tern pair usurping the Least Tern (Sternula antillarum) nest and brooding...
The USGS 2023 Conterminous U.S. time‐independent earthquake rupture forecast
Edward H. Field, Kevin R. Milner, Alexandra Elise Hatem, Peter M. Powers, Frederick Pollitz, Andrea L. Llenos, Yuehua Zeng, Kaj M. Johnson, Bruce E. Shaw, Devin McPhillips, Jessica Ann Thompson Jobe, Allison Shumway, Andrew J. Michael, Zheng-Kang Shen, Eileen L. Evans, Elizabeth H. Hearn, Charles Mueller, Arthur D. Frankel, Mark D. Petersen, Christopher DuRoss, Richard W. Briggs, Morgan T. Page, Justin Rubinstein, Julie A. Herrick
2024, Bulletin of the Seismological Society of America (114) 523-571
We present the 2023 U.S. Geological Survey time‐independent earthquake rupture forecast for the conterminous United States, which gives authoritative estimates of the magnitude, location, and time‐averaged frequency of potentially damaging earthquakes throughout the region. In addition to updating virtually all model components, a...
Divergent physiological responses of hydric and mesic riparian plant species to a Colorado River experimental flow
Bradley J. Butterfield, Emily C. Palmquist
2024, Plant Ecology (225) 125-133
Riparian plant species can differ in their responses to streamflow variation in ways that strongly influence the composition and functioning of riparian plant communities. Quantifying these differences and the potential asymmetry of responses to low- versus high-flow phases of stream fluctuations is important for predicting and...
A comprehensive fault system inversion approach: Methods and application to NSHM23
Kevin R. Milner, Edward H. Field
2024, Bulletin of the Seismological Society of America (114) 486-522
We present updated inversion‐based fault‐system solutions for the 2023 update to the National Seismic Hazard Model (NSHM23), standardizing earthquake rate model calculations on crustal faults across the western United States. We build upon the inversion methodology used in the Third Uniform California Earthquake...
Alaska's climate sensitive Yukon-Kuskokwim Delta supports seven million Arctic-breeding shorebirds, including the majority of six North American populations
James E. Lyons, Stephen C. Brown, Sarah T. Saalfeld, James A. Johnson, Brad A. Andres, Kristine M. Sowl, Robert E. Gill, Brian J. McCaffery, Lindall Kidd, Metta McGarvey, Brad Winn, H. River Gates, Diane A. Granfors, Richard B. Lanctot
2024, Ornithological Applications (126)
Baseline information about declining North American shorebird populations is essential to determine the effects of global warming at low-lying coastal areas of the Arctic and subarctic, where numerous taxa breed, and to assess population recovery throughout their range. We estimated population sizes on the Yukon-Kuskokwim Delta in western Alaska...
Trophic ecology of juvenile lean and siscowet lake charr (Salvelinus namaycush) in Lake Superior: Assessing for potential competition
Brandon S. Gerig, Shawn P. Sitar, Will F Otte, Daniel L. Yule, Heidi K. Swanson, Charles R. Bronte, Dray Carl, Joshua Blankenheim
2024, Canadian Journal of Fisheries and Aquatic Sciences (81) 115-128
We investigated the spatial overlap, diet, isotopic niche, and growth of juvenile lean and siscowet lake charr (Salvelinus namaycush) in Lake Superior to address concerns of potential competition with implications to the study of resource polymorphism. Catch data revealed the greatest levels of sympatry in waters from...
Prospects of pollinator community surveillance using terrestrial environmental DNA metagenetics
Grace Avalos, Regina Trott, John Ballas, Chia Hua Lin, Clayton D. Raines, Deborah D. Iwanowicz, Karen Goodell, Rodney T. Richardson
2024, Environmental DNA (6)
Current pollinator survey methods exhibit bias, require highly-trained practitioners, and are difficult to scale to large sample sizes. High-throughput sequencing of terrestrial eDNA could provide a complementary tool for studying pollinator communities, but eDNA methods have not been extensively evaluated. We conducted metagenetic analysis...
Do topographic changes tell us about variability in aeolian sediment transport and dune mobility? Analysis of monthly to decadal surface changes in a partially vegetated and biocrust covered dunefield
Joshua Caster, Joel B. Sankey, Temuulen Ts. Sankey, Alan Kasprak, Matthew A. Bowker, Taylor Joyal
2024, Geomorphology (447)
Vegetation and biological soil crust (biocrust) cover can have a stabilizing effect on dunes by fixing sediment in-place and increasing surface roughness, thus limiting dune mobility, sediment transport, and erosion. These biological effects influence rates of aeolian activity and thus surficial changes, though variability in wind and sediment supply may...
