Uncertainty in biological monitoring: a framework for data collection and analysis to account for multiple sources of sampling bias
Viviana Ruiz-Gutierrez, Melvin B. Hooten, Evan H. Campbell Grant
2016, Methods in Ecology and Evolution (7) 900-909
Biological monitoring programmes are increasingly relying upon large volumes of citizen-science data to improve the scope and spatial coverage of information, challenging the scientific community to develop design and model-based approaches to improve inference.Recent statistical models in ecology have been developed to accommodate false-negative errors, although current...
A downstream voyage with mercury
Gary Heinz
2016, Bulletin of Environmental Contamination and Toxicology (97) 591-592
Retrospective essay for the Bulletin of Environmental Contamination and Toxicology.As I look back on my paper, “Effects of Low Dietary Levels of Methyl Mercury on Mallard Reproduction,” published in 1974 in the Bulletin of Environmental Contamination and Toxicology, a thought sticks in my mind. I realize just how much...
Nuclear and mitochondrial DNA analyses of golden eagles (Aquila chrysaetos canadensis) from three areas in western North America; initial results and conservation implications
Erica H. Craig, Jennifer R. Adams, Lisette P. Waits, Mark R. Fuller, Diana M. Whittington
2016, PLoS ONE (11)
Understanding the genetics of a population is a critical component of developing conservation strategies. We used archived tissue samples from golden eagles (Aquila chrysaetos canadensis) in three geographic regions of western North America to conduct a preliminary study of the genetics of the North American subspecies, and to provide data...
Sedimentation survey of Lago La Plata, Toa Alta, Puerto Rico, March–April 2015
Julieta Gómez-Fragoso
2016, Scientific Investigations Map 3369
IntroductionLago La Plata is operated by the Puerto Rico Aqueduct and Sewer Authority (PRASA) and is part of the San Juan Metropolitan Water District. The reservoir serves a population of about 425,000 people. During 2013 the reservoir provided 0.307 million cubic meters (Mm3 ) of water per day (about 81...
Three ingredients for Improved global aftershock forecasts: Tectonic region, time-dependent catalog incompleteness, and inter-sequence variability
Morgan T. Page, Nicholas van der Elst, Jeanne L. Hardebeck, Karen Felzer, Andrew J. Michael
2016, Bulletin of the Seismological Society of America (106) 2290-2301
Following a large earthquake, seismic hazard can be orders of magnitude higher than the long‐term average as a result of aftershock triggering. Because of this heightened hazard, emergency managers and the public demand rapid, authoritative, and reliable aftershock forecasts. In the past, U.S. Geological Survey (USGS) aftershock forecasts following large...
Differential heating in the Indian Ocean differentially modulates precipitation in the Ganges and Brahmaputra basins
Md Shahriar Pervez, Geoffrey M. Henebry
2016, Remote Sensing (8) 1-16
Indo-Pacific sea surface temperature dynamics play a prominent role in Asian summer monsoon variability. Two interactive climate modes of the Indo-Pacific—the El Niño/Southern Oscillation (ENSO) and the Indian Ocean dipole mode—modulate the amount of precipitation over India, in addition to precipitation over Africa, Indonesia, and Australia. However, this modulation is...
Large along-strike variations in the onset of Subandean exhumation: Implications for Central Andean orogenic growth
Richard O. Lease, T.A. Ehlers, E. Enkelmann
2016, Earth and Planetary Science Letters (451) 62-76
Plate tectonics drives mountain building in general, but the space-time pattern and style of deformation is influenced by how climate, geodynamics, and basement structure modify the orogenic wedge. Growth of the Subandean thrust belt, which lies at the boundary between the arid, high-elevation Central Andean Plateau and its humid, low-elevation...
Recurrent hybridization and recent origin obscure phylogenetic relationships within the ‘white-headed’ gull (Larus sp.) complex
Sarah A. Sonsthagen, Robert E. Wilson, Terry Chesser, Jean-Marc Pons, Pierre-Andre Crochet, Amy Driscoll, Carla Dove
2016, Molecular Phylogenetics and Evolution (103) 41-54
Species complexes that have undergone recent radiations are often characterized by extensive allele sharing due to recent ancestry and (or) introgressive hybridization. This can result in discordant evolutionary histories of genes and heterogeneous genomes, making delineating species limits difficult. Here we examine the phylogenetic relationships among a complex group of...
Spatiotemporal variability of inorganic nutrients during wastewater effluent dominated streamflow conditions in Indian Creek, Johnson County, Kansas, 2012–15
Guy M. Foster, Jennifer L. Graham, Thomas J. Williams, Lindsey R. King
2016, Scientific Investigations Report 2016-5147
Nutrients, particularly nitrogen and phosphorus, are a leading cause of water-quality impairment in Kansas and the Nation. Indian Creek is one of the most urban drainage basins in Johnson County, Kansas, and environmental and biological conditions are affected by contaminants from point and other urban sources. The Johnson County Douglas...
Is consolidation drainage an indirect mechanism for increased abundance of cattail in northern prairie wetlands?
Mark T. Wiltermuth, Michael J. Anteau
2016, Wetlands Ecology and Management (24) 533-544
In the Prairie Pothole Region of North America, disturbances to wetlands that disrupt water-level fluctuations in response to wet–dry climatic conditions have the potential to alter natural vegetative communities in favor of species that proliferate in stable environments, such as cattail (Typha spp.). We evaluated the effect of water-level dynamics...
Loads of nitrate, phosphorus, and total suspended solids from Indiana watersheds
Aubrey R. Bunch
2016, Proceedings of the Indiana Academy of Science (125) 137-150
Transport of excess nutrients and total suspended solids (TSS) such as sediment by freshwater systems has led to degradation of aquatic ecosystems around the world. Nutrient and TSS loads from Midwestern states to the Mississippi River are a major contributor to the Gulf of Mexico Hypoxic Zone, an area of...
Continental rupture and the creation of new crust in the Salton Trough rift, southern California and northern Mexico: Results from the Salton Seismic Imaging Project
Liang Han, John A. Hole, Joann M. Stock, Gary S. Fuis, Annie Kell, Neal W. Driscoll, Graham M. Kent, Michael J. Rymer, Antonio Gonzalez-Fernandez, Octavio Aburto-Oropeza
2016, Journal of Geophysical Research (121) 7469-7489
A refraction and wide-angle reflection seismic profile along the axis of the Salton Trough, California and Mexico, was analyzed to constrain crustal and upper mantle seismic velocity structure during active continental rifting. From the northern Salton Sea to the southern Imperial Valley, the crust is 17-18 km thick and approximately...
Sedimentary exhalative (sedex) zinc-lead-silver deposit model
Poul Emsbo, Robert R. Seal, George N. Breit, Sharon F. Diehl, Anjana K. Shah
2016, Scientific Investigations Report 2010-5070-N
This report draws on previous syntheses and basic research studies of sedimentary exhalative (sedex) deposits to arrive at the defining criteria, both descriptive and genetic, for sedex-type deposits. Studies of the tectonic, sedimentary, and fluid evolution of modern and ancient sedimentary basins have also been used to select defining criteria....
Community for Data Integration 2015 annual report
Madison L. Langseth, Michelle Y. Chang, Jennifer Carlino, J. Ryan Bellmore, Daniella D. Birch, Joshua Bradley, R. Sky Bristol, Daniel D. Buscombe, Jeffrey J. Duda, Anthony L. Everette, Tabitha A. Graves, Michelle M. Greenwood, David L. Govoni, Heather S. Henkel, Vivian B. Hutchison, Brenda K. Jones, Tim Kern, Jennifer Lacey, Rynn M. Lamb, Frances L. Lightsom, John L. Long, Ra’ad A. Saleh, Stan W. Smith, Christopher E. Soulard, Roland J. Viger, Jonathan A. Warrick, Katherine E. Wesenberg, Daniel J. Wieferich, Luke A. Winslow
2016, Open-File Report 2016-1165
The Community for Data Integration (CDI) continued to experience success in fiscal year 2015. The CDI community members have been sharing, learning, and collaborating through monthly forums, workshops, working groups, and funded projects. In fiscal year 2015, CDI coordinated 10 monthly forums with 16 different speakers from the U.S. Geological...
Hydrogeologic framework of LaSalle County, Illinois
Robert T. Kay, Clinton R. Bailey
2016, Scientific Investigations Report 2016-5154
Water-supply needs in LaSalle County in northern Illinois are met by surface water and groundwater. Water-supply needs are expected to increase to serve future residential and mining uses. Available information on water use, geology, surface-water and groundwater hydrology, and water quality provides a hydrogeologic framework for LaSalle County that can...
High-resolution geophysical data from the Inner Continental Shelf: South of Martha's Vineyard and north of Nantucket, Massachusetts
Seth D. Ackerman, Laura L. Brothers, David S. Foster, Brian D. Andrews, Wayne E. Baldwin, William C. Schwab
2016, Open-File Report 2016-1168
The U.S. Geological Survey and the Massachusetts Office of Coastal Zone Management have cooperated to map approximately 185 square kilometers of the inner continental shelf south of Martha’s Vineyard and north of Nantucket, Massachusetts. This report contains geophysical data collected by the U.S. Geological Survey during a survey in 2013....
Collision and displacement vulnerability among marine birds of the California Current System associated with offshore wind energy infrastructure
Josh Adams, Emily C. Kelsey, Jonathan J. Felis, David M. Pereksta
2016, Open-File Report 2016-1154
With growing climate change concerns and energy constraints, there is an increasing need for renewable energy sources within the United States and globally. Looking forward, offshore wind-energy infrastructure (OWEI) has the potential to produce a significant proportion of the power needed to reach our Nation’s renewable energy goal. Offshore...
Decoupling processes and scales of shoreline morphodynamics
Cheryl J. Hapke, Nathaniel G. Plant, Rachel E. Henderson, William C. Schwab, Timothy R. Nelson
2016, Marine Geology (381) 42-53
Behavior of coastal systems on time scales ranging from single storm events to years and decades is controlled by both small-scale sediment transport processes and large-scale geologic, oceanographic, and morphologic processes. Improved understanding of coastal behavior at multiple time scales is required for refining models that predict potential erosion hazards...
Optimization of a sample processing protocol for recovery of Bacillus anthracis spores from soil
Erin E. Silvestri, David Feldhake, Dale Griffin, John T. Lisle, Tonya L. Nichols, Sanjiv Shah, A Pemberton, Frank W Schaefer III
2016, Journal of Microbiological Methods (130) 6-13
Following a release of Bacillus anthracis spores into the environment, there is a potential for lasting environmental contamination in soils. There is a need for detection protocols for B. anthracis in environmental matrices. However, identification of B. anthracis within a soil is a difficult task. Processing soil samples helps to...
Mitigating amphibian chytridiomycosis in nature
Trenton W. J. Garner, Benedikt R. Schmidt, An Martel, Frank Pasmans, Erin L. Muths, Andrew A. Cunningham, Che Weldon, Matthew C. Fisher, Jaime Bosch
2016, Philosophical Transactions of the Royal Society B: Biological Sciences (371)
Amphibians across the planet face the threat of population decline and extirpation caused by the disease chytridiomycosis. Despite consensus that the fungal pathogens responsible for the disease are conservation issues, strategies to mitigate their impacts in the natural world are, at best, nascent. Reducing risk associated with the movement of...
Environmental factors influence lesser scaup migration chronology and population monitoring
Taylor A. Finger, Alan D. Afton, Michael L. Schummer, Scott A. Petrie, Shannon S. Badzinski, Michael A. Johnson, Michael L. Szymanski, Kevin J. Jacobs, Glenn H. Olsen, Mark Mitchell
2016, Journal of Wildlife Management (80) 1437-1449
Identifying environmental metrics specific to lesser scaup (Aythya affinis; scaup) spring migration chronology may help inform development of conservation, management and population monitoring. Our objective was to determine how environmental conditions influence spring migration of lesser scaup to assess the effectiveness of the Waterfowl Breeding Population and Habitat Survey in...
Application of dimensionless sediment rating curves to predict suspended-sediment concentrations, bedload, and annual sediment loads for rivers in Minnesota
Christopher A. Ellison, Joel T. Groten, David L. Lorenz, Karl S. Koller
2016, Scientific Investigations Report 2016-5146
Consistent and reliable sediment data are needed by Federal, State, and local government agencies responsible for monitoring water quality, planning river restoration, quantifying sediment budgets, and evaluating the effectiveness of sediment reduction strategies. Heightened concerns about excessive sediment in rivers and the challenge to reduce costs and eliminate data gaps...
A multi-decade record of high-quality fCO2 data in version 3 of the Surface Ocean CO2 Atlas (SOCAT)
Dorothee Bakker, Camilla S. Landa, Benjamin Pfeil, Nicolas Metzl, Kevin O’Brien, Are Olsen, Karl Smith, Cathy Cosca, Sumiko Harasawa, Shin-ichiro Nakaoka, Stephen Jones, Yukihiro Nojiri, Tobias Steinhoff, Colm Sweeney, Ute Schuster, Taro Takahashi, Bronte Tilbrook, Chisato Wada, Rik Wanninkhof, Simone R. Alin, Carlos F. Balestrini, Leticia Barbero, Nicholas Bates, Alejandro A. Bianchi, Frederic Bonou, Jacqueline Boutin, Yann Bozec, Eugene F. Burger, Wei-Jun Cai, Robert D. Castle, Liqi Chen, Melissa Chierici, Kim Currie, Wiley Evans, Charles Featherstone, Richard Feely, Agneta Fransson, Catherine Goyet, Naomi Greenwood, Luke Gregor, Steven C. Hankin, Nick J. Hardman-Mountford, Jerome Harlay, Judith Hauck, Mario Hoppema, Matthew P. Humphreys, Christopher W. Hunt, Betty Huss, J. Severino P. Ibanhez, Truls Johannessen, Ralph F. Keeling, Vassilis Kitidis, Arne Kortzinger, Alex Kozyr, Evangelia Krasakopoulou, Akira Kuwata, Peter Landschutzer, Siv K. Lauvset, Nathalie Lefevre, Claire Lo Monaco, Ansley Manke, Jeremy T. Mathis, Liliane Merlivat, Frank J. Millero, Pedro M. S. Monteiro, David R. Munro, Akihiko Murata, Timothy Newberger, Abdirahman M. Omar, Tsuneo Ono, Kristina Paterson, David Pearce, Denis Pierrot, Lisa L. Robbins, Shu Saito, Joe Salisbury, Reiner Schlitzer, Bernd Schneider, Roland Schweitzer, Rainer Sieger, Ingunn Skjelvan, Kevin F. Sullivan, Stewart C. Sutherland, Adrienne J. Sutton, Kazuaki Tadokoro, Maciej Telszewski, Matthias Tuma, Steven M. A. C. van Heuven, Douglas Vandemark, Brian Ward, Andrew J. Watson, Suqing Xu
2016, Earth System Science Data (8) 383-413
The Surface Ocean CO2 Atlas (SOCAT) is a synthesis of quality-controlled f CO2 (fugacity of carbon dioxide) values for the global surface oceans and coastal seas with regular updates. Version 3 of SOCAT has 14.7 million f CO2 values from 3646 data sets covering the years 1957 to 2014. This...
Alternative approaches to vertebrate ecotoxicity tests in the 21st century: A review of developments over the last 2 decades and current status
Adam Lillicrap, Scott Belanger, Natalie Burden, David Du Pasquier, Michelle Embry, Marlies Halder, Mark Lampi, Lucy Lee, Teresa J. Norberg-King, Barnett A. Rattner, Kristin Schirmer, Paul Thomas
2016, Environmental Toxicology and Chemistry (35) 2637-2646
The need for alternative approaches to the use of vertebrate animals for hazard assessment of chemicals and pollutants has become of increasing importance. It is now the first consideration when initiating a vertebrate ecotoxicity test, to ensure that unnecessary use of vertebrate organisms is minimized wherever possible. For some regulatory...
Sources, distributions and dynamics of dissolved organic matter in the Canada and Makarov Basins
Yuan Shen, Ronald Benner, Lisa L. Robbins, Jonathan Wynn
2016, Frontiers in Marine Science (3)
A comprehensive survey of dissolved organic carbon (DOC) and chromophoric dissolved organic matter (CDOM) was conducted in the Canada and Makarov Basins and adjacent seas during 2010–2012 to investigate the dynamics of dissolved organic matter (DOM) in the Arctic Ocean. Sources and distributions of DOM in polar surface waters were...
