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Publication Extents

Not all publications have extents, not all extents are completely accurate
Bacterial genomics reveal the complex epidemiology of an emerging pathogen in arctic and boreal ungulates
Taya L. Forde, Karin Orsel, Ruth N. Zadoks, Roman Biek, Layne G. Adams, Sylvia L. Checkley, Tracy Davison, Jeroen De Buck, Mathieu Dumond, Brett T. Elkin, Laura Finnegan, Bryan J. Macbeth, Cait Nelson, Amanda Niptanatiak, Shane Sather, Helen M. Schwantje, Frank van der Meer, Susan J. Kutz
2016, Frontiers in Microbiology (7) 1-14
Northern ecosystems are currently experiencing unprecedented ecological change, largely driven by a rapidly changing climate. Pathogen range expansion, and emergence and altered patterns of infectious disease, are increasingly reported in wildlife at high latitudes. Understanding the causes and consequences of shifting pathogen diversity and host-pathogen interactions in these ecosystems is...
Chronic wasting disease in white-tailed deer: Infection, mortality, and implications for heterogeneous transmission
Michael D. Samuel, Daniel J. Storm
2016, Ecology (97) 3195-3205
Chronic wasting disease (CWD) is a fatal neurodegenerative disease affecting free-ranging and captive cervids that now occurs in 24 U.S. states and two Canadian provinces. Despite the potential threat of CWD to deer populations, little is known about the rates of infection and mortality caused by this disease. We used...
The use of amino acid indices for assessing organic matter quality and microbial abundance in deep-sea Antarctic sediments of IODP Expedition 318
Stephanie A Carr, Christopher T. Mills, Kevin W Mandernack
2016, Marine Chemistry (186) 72-82
The Adélie Basin, located offshore of the Wilkes Land margin, experiences unusually high sedimentation rates (~ 2 cm yr− 1) for the Antarctic coast. This study sought to compare depthwise changes in organic matter (OM) quantity and quality with changes in microbial biomass with depth at this high-deposition site and an offshore continental margin...
Positive biodiversity-productivity relationship predominant in global forests
Jingjing Liang, Thomas W. Crowther, Nicolas Picard, Susan Wiser, Mo Zhou, Giorgio Alberti, Ernst-Detlef Schulze, Anthony D. McGuire, et al.
2016, Science (354)
The relationship between biodiversity and ecosystem productivity has been explored in detail in herbaceous vegetation, but patterns in forests are far less well understood. Liang et al. have amassed a global forest data set from >770,000 sample plots in 44 countries. A positive and consistent relationship can be discerned between...
Assessing the role of climate and resource management on groundwater dependent ecosystem changes in arid environments with the Landsat archive
Justin Huntington, Kenneth C. McGwire, Charles Morton, Keirith A. Snyder, Sarah Peterson, Tyler Erickson, Richard G. Niswonger, Rosemary W.H. Carroll, Guy Smith, Richard Allen
2016, Remote Sensing of Environment (185) 186-197
Groundwater dependent ecosystems (GDEs) rely on near-surface groundwater. These systems are receiving more attention with rising air temperature, prolonged drought, and where groundwater pumping captures natural groundwater discharge for anthropogenic use. Phreatophyte shrublands, meadows, and riparian areas are GDEs that provide critical habitat for many sensitive species, especially in arid...
Dynamic social networks based on movement
Henry Scharf, Mevin Hooten, Bailey K. Fosdick, Devin S. Johnson, Joshua M. London, John W. Durban
2016, The Annals of Applied Statistics (10) 2182-2202
Network modeling techniques provide a means for quantifying social structure in populations of individuals. Data used to define social connectivity are often expensive to collect and based on case-specific, ad hoc criteria. Moreover, in applications involving animal social networks, collection of these data is often opportunistic and can be invasive. Frequently, the...
Evaluation of fisher (Pekania pennanti) restoration in Olympic National Park and the Olympic Recovery Area: 2015 final annual progress report
Patricia J. Happe, Kurt J. Jenkins, Thomas J. Kay, Kristie Pilgrim, Michael K. Schwartz, Jeffrey C. Lewis, Keith B. Aubry
2016, Natural Resource Report NPS/OLYM/NRR—2016/1274
With the translocation and release of 90 fishers (Pekania pennanti) from British Columbia to Olympic National Park during 2008–2010, the National Park Service (NPS) and Washington Department of Fish and Wildlife (WDFW) accomplished the first phase of fisher restoration in Washington State. Beginning in 2013, we initiated a new research...
Volcano dome dynamics at Mount St. Helens: Deformation and intermittent subsidence monitored by seismicity and camera imagery pixel offsets
Jacqueline T. Salzer, Weston A. Thelen, Mike R. James, Thomas R. Walter, Seth C. Moran, Roger P. Denlinger
2016, Journal of Geophysical Research B: Solid Earth (121) 7882-7902
The surface deformation field measured at volcanic domes provides insights into the effects of magmatic processes, gravity- and gas-driven processes, and the development and distribution of internal dome structures. Here we study short-term dome deformation associated with earthquakes at Mount St. Helens, recorded by a permanent optical camera and seismic...
Hanson Russian River Ponds floodplain restoration: Feasibility study and conceptual design; Appendix G: Physical evaluation of the restoration alternatives
Richard R. McDonald, Jonathan M. Nelson
2016, Book chapter, Hanson Russian River Ponds floodplain restoration: Feasibility study and conceptual design
Appendix G: Hanson Russian River Ponds Floodplain Restoration: Feasibility Study and Conceptual Design |G-1Appendix GPhysical Evaluation of the Restoration AlternativesRichard McDonald and Jonathan Nelson, PhDU.S. Geological Survey Geomorphology and Sediment Transport Laboratory, Golden, ColoradoIntroductionTo assess the relative and overall impacts of the scenarios proposed in Chapters 7 and 9,(Stage I-A–I-D...
Rapid fluvial incision of a late Holocene lava flow: Insights from LiDAR, alluvial stratigraphy, and numerical modeling
Kristin Sweeney, Joshua J. Roering
2016, GSA Bulletin (129) 500-512
Volcanic eruptions fundamentally alter landscapes, paving over channels, decimating biota, and emplacing fresh, unweathered material. The fluvial incision of blocky lava flows is a geomorphic puzzle. First, high surface permeability and lack of sediment should preclude geomorphically effective surface runoff and dissection. Furthermore, past work has demonstrated the importance of...
Development of novel microsatellite markers for the Northern Goshawk (Accipiter gentilis) and their utility in cross-species amplification
Christy Haughey, George K. Sage, Gabriel Degange, Sarah A. Sonsthagen, Sandra L. Talbot
2016, Avian Biology Research (9) 195-199
The Northern Goshawk (Accipiter gentilis) is a large forest raptor with a Holarctic distribution and, in some portions of its range, a species of conservation concern. To augment previously reported genetic markers, 13 novel polymorphic microsatellite markers were developed to establish individual identification and familial relationships, to assess levels of...
A suspended dive-net technique for catching territorial divers
Brian D. Uher-Koch, Daniel Rizzolo, Kenneth G. Wright, Joel A. Schmutz
2016, Ringing and Migration (31) 19-22
A variety of methods such as night-lighting and lift nets have been used to catch divers (Gavidae), although 24-hour daylight in the Arctic summer and the remote nature of field sites can make the use of these traditional methods impossible. Our research required capture of adult divers at remote locations...
Past and predicted future effects of housing growth on open space conservation opportunity areas and habitat connectivity around National Wildlife Refuges
Christopher M. Hamilton, Matthias Baumann, Anna M. Pidgeon, David P. Helmers, Wayne E. Thogmartin, Patricia J. Heglund, Volker C. Radeloff
2016, Landscape Ecology (31) 2175-2186
ContextHousing growth can alter suitability of matrix habitats around protected areas, strongly affecting movements of organisms and, consequently, threatening connectivity of protected area networks.ObjectivesOur goal was to quantify distribution and growth of housing around the U.S. Fish and Wildlife Service...
Sagebrush, greater sage-grouse, and the occurrence and importance of forbs
Victoria E. Pennington, Daniel R. Schlaepfer, Jeffrey L. Beck, John B. Bradford, Kyle A. Palmquist, William K. Lauenroth
2016, Western North American Naturalist (76) 298-312
Big sagebrush (Artemisia tridentata Nutt.) ecosystems provide habitat for sagebrush-obligate wildlife species such as the Greater Sage-Grouse (Centrocercus urophasianus). The understory of big sagebrush plant communities is composed of grasses and forbs that are important sources of cover and food for wildlife. The grass component is well described in the...
Effects of land use and sample location on nitrate-stream flow hysteresis descriptors during storm events
Lawrence S. Feinson, Jacob Gibs, Thomas E. Imbrigiotta, Jessica D. Garrett
2016, Journal of the American Water Resources Association (52) 1493-1508
The U.S. Geological Survey's New Jersey and Iowa Water Science Centers deployed ultraviolet-visible spectrophotometric sensors at water-quality monitoring sites on the Passaic and Pompton Rivers at Two Bridges, New Jersey, on Toms River at Toms River, New Jersey, and on the North Raccoon River near Jefferson, Iowa to continuously measure...
Static and dynamic controls on fire activity at moderate spatial and temporal scales in the Alaskan boreal forest
Kirsten Barrett, Tatiana Loboda, A. David McGuire, Hélène Genet, Elizabeth Hoy, Eric Kasischke
2016, Ecosphere (7) 1-21
Wildfire, a dominant disturbance in boreal forests, is highly variable in occurrence and behavior at multiple spatiotemporal scales. New data sets provide more detailed spatial and temporal observations of active fires and the post-burn environment in Alaska. In this study, we employ some of these new data to analyze variations...
Multiple browsers structure tree recruitment in logged temperate forests
Edward K. Faison, Stephen DeStefano, David R. Foster, Joshua M. Rapp, Justin A. Compton
2016, PLoS ONE (11) 1-14
Historical extirpations have resulted in depauperate large herbivore assemblages in many northern forests. In eastern North America, most forests are inhabited by a single wild ungulate species, white-tailed deer (Odocoileus virginianus), and relationships between deer densities and impacts on forest regeneration are correspondingly well documented. Recent recolonizations by moose (Alces...
Microrefuges and the occurrence of thermal specialists: implications for wildlife persistence amidst changing temperatures
L. Embere Hall, Anna D. Chalfoun, Erik A. Beever, Anne E. Loosen
2016, Climate Change Responses (3) 1-12
BackgroundContemporary climate change is affecting nearly all biomes, causing shifts in animal distributions, phenology, and persistence. Favorable microclimates may buffer organisms against rapid changes in climate, thereby allowing time for populations to adapt. The degree to which microclimates facilitate the local persistence of climate-sensitive species,...
Metabarcoding of fecal samples to determine herbivore diets: A case study of the endangered Pacific pocket mouse
Deborah D. Iwanowicz, Amy G. Vandergast, Robert S. Cornman, Cynthia R. Adams, Joshua R. Kohn, Robert N. Fisher, Cheryl S. Brehme
2016, PLoS ONE (11) 1-23
Understanding the diet of an endangered species illuminates the animal’s ecology, habitat requirements, and conservation needs. However, direct observation of diet can be difficult, particularly for small, nocturnal animals such as the Pacific pocket mouse (Heteromyidae: Perognathus longimembris pacificus). Very little is known of the dietary habits of this federally endangered...
The Grand Ethiopian Renaissance Dam: Source of cooperation or contention?
Meron Teferi Taye, Tsegaye Tadesse, Gabriel Senay, Paul Block
2016, Journal of Water Resources Planning and Management (142) 1-5
This paper discusses the challenges and benefits of the Grand Ethiopian Renaissance Dam (GERD), which is under construction and expected to be operational on the Blue Nile River in Ethiopia in a few years. Like many large-scale projects on transboundary rivers, the GERD has been criticized for potentially jeopardizing downstream...
Bedrock morphology and structure, upper Santa Cruz Basin, south-central Arizona, with transient electromagnetic survey data
Mark W. Bultman, William R. Page
2016, Open-File Report 2016-1152
The upper Santa Cruz Basin is an important groundwater basin containing the regional aquifer for the city of Nogales, Arizona. This report provides data and interpretations of data aimed at better understanding the bedrock morphology and structure of the upper Santa Cruz Basin study area which encompasses the Rio Rico...
Time-lapse gravity data for monitoring and modeling artificial recharge through a thick unsaturated zone
Jeffrey R. Kennedy, Ty P.A. Ferre, Benjamin Creutzfeldt
2016, Water Resources Research (52) 7244-7261
Groundwater-level measurements in monitoring wells or piezometers are the most common, and often the only, hydrologic measurements made at artificial recharge facilities. Measurements of gravity change over time provide an additional source of information about changes in groundwater storage, infiltration, and for model calibration. We demonstrate that for an artificial...
Persistence and diversity of directional landscape connectivity improves biomass pulsing in expanding and contracting wetlands
Simeon Yurek, Donald L. DeAngelis, Joel C. Trexler, Stephen Klassen, Laurel G. Larsen
2016, Ecological Complexity (28) 1-11
In flood-pulsed ecosystems, hydrology and landscape structure mediate transfers of energy up the food chain by expanding and contracting in area, enabling spatial expansion and growth of fish populations during rising water levels, and subsequent concentration during the drying phase. Connectivity of flooded areas is dynamic as waters rise and...
Bayesian cross-validation for model evaluation and selection, with application to the North American Breeding Bird Survey
William A. Link, John R. Sauer
2016, Ecology (97) 1746-1758
The analysis of ecological data has changed in two important ways over the last 15 years. The development and easy availability of Bayesian computational methods has allowed and encouraged the fitting of complex hierarchical models. At the same time, there has been increasing emphasis on acknowledging and accounting for model uncertainty....