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Publication Extents

Not all publications have extents, not all extents are completely accurate
Automated mapping of culverts, bridges, and dams
Ethan J. Shavers, Larry Stanislawski, Joel Schott, Zachary Brosseau
2023, Conference Paper, Abstracts of the International Cartographic Association
Accurate maps of built structures around stream channels, such as dams, culverts, and bridges, are vital in monitoring infrastructure, risk management, and hydrologic modeling. Hydrologic modeling is essential for research and decisionmaking related to infrastructure and development planning, emergency management, ecology, and developing hydrographic data. Technological advances in remote sensing...
AIMS for wildlife: Developing an automated interactive monitoring system to integrate real-time movement and environmental data for true adaptive management
Michael L. Casazza, Austen Lorenz, Cory T. Overton, Elliott L. Matchett, Andrea Lynn Mott, Desmond Alexander Mackell, Fiona McDuie
2023, Journal of Environmental Management (345)
To effectively manage species and habitats at multiple scales, population and land managers require rapid information on wildlife use of managed areas and responses to landscape conditions and management actions. GPS tracking studies of wildlife are particularly informative to species ecology, habitat use, and...
Conservation decision support for Silver Chub habitat in Lake Erie
James E. McKenna Jr.
2023, North American Journal of Fisheries Management (43) 1151-1165
ObjectiveConservation and restoration of aquatic species is difficult, especially for rare species, because their habitats are typically disturbed, obscuring the natural ability of the habitat to support each species. The Lake Erie population of Silver Chub Macrhybopsis storeriana struggles to sustain itself in a habitat disturbed by a wide...
Evaluation of hydrodynamic mixing in an afterbay reservoir
Paul Work
2023, Journal of Environmental Engineering (149)
This study focused on the mixing of a solute, assumed to be conservative, introduced to one arm of an afterbay reservoir, between Keswick and Shasta Dams on the Sacramento River near Redding, California. Rhodamine water tracer (WT) dye served as the solute in a field experiment, and was introduced over...
Prey ration, temperature, and predator species influence digestion rates of prey DNA inferred from qPCR and metabarcoding
Cory Dick, Wesley A. Larson, Kirby Karpan, Diana S. Baetscher, Yue Shi, Suresh Sethi, Nann A. Fangue, Mark J. Henderson
2023, Molecular Ecology Resources (00) 1-17
Diet analysis is a vital tool for understanding trophic interactions and is frequently used to inform conservation and management. Molecular approaches can identify diet items that are impossible to distinguish using more traditional visual-based methods. Yet, our understanding of how different variables, such as predator species or prey ration size,...
SaTSeaD: Satellite Triangulated Sea Depth open-source bathymetry module for NASA Ames Stereo Pipeline
Monica Palaseanu-Lovejoy, Oleg Alexandrov, Jeffrey J. Danielson, Curt D. Storlazzi
2023, Remote Sensing (15)
We developed the first-ever bathymetric module for the NASA Ames Stereo Pipeline (ASP) open-source topographic software called Satellite Triangulated Sea Depth, or SaTSeaD, to derive nearshore bathymetry from stereo imagery. Correct bathymetry measurements depend on water surface elevation, and whereas previous methods considered the water surface horizontal, our bathymetric...
Fuel treatments in shrublands experiencing pinyon and juniper expansion result in trade-offs between desired vegetation and increased fire behavior
Claire L. Williams, Lisa M. Ellsworth, Eva Strand, Matt C. Reeves, Scott E. Shaff, Karen Short, Jeanne C. Chambers, Beth Newingham, Claire Tortorelli
2023, Fire Ecology (19)
BackgroundNative pinyon (Pinus spp.) and juniper (Juniperus spp.) trees are expanding into shrubland communities across the Western United States. These trees often outcompete with native sagebrush (Artemisia spp.) associated species, resulting in increased canopy fuels and reduced surface fuels. Woodland expansion often results in longer fire return intervals with potential for...
Salinization and sedimentation drive contrasting assembly mechanisms of planktonic and sediment-bound bacterial communities in agricultural streams
Stephen E. DeVilbiss, Jason M. Taylor, Matthew B. Hicks
2023, Global Change Biology (29) 5615-5633
Agriculture is the most dominant land use globally and is projected to increase in the future to support a growing human population but also threatens ecosystem structure and services. Bacteria mediate numerous biogeochemical pathways within ecosystems. Therefore, identifying linkages between stressors associated with agricultural land use and responses of bacterial...
A spatially explicit modeling framework to guide management of subsidized avian predator densities
Shawn T. O’Neil, Peter S. Coates, Sarah C. Webster, Brianne E. Brussee, Seth J. Dettenmaier, John C. Tull, Pat J. Jackson, Michael L. Casazza, Shawn P. Espinosa
2023, Ecosphere (14)
Anthropogenic resource subsidization across western ecosystems has contributed to widespread increases in generalist avian predators, including common ravens (Corvus corax; hereafter, raven). Ravens are adept nest predators and can negatively impact species of conservation concern. Predation effects from ravens are especially concerning for greater...
Merging machine learning and geostatistical approaches for spatial modeling of geoenergy resources
Gamze Erdogan Erten, Oktay Erten, C. Ozgen Karacan, Jeff Boisvert, Clayton V. Deutsch
2023, International Journal of Coal Geology (276)
Geostatistics is the most commonly used probabilistic approach for modeling earth systems, including quality parameters of various geoenergy resources. In geostatistics, estimates, either on a point or block support, are generated as a spatially-weighted average of surrounding samples. The optimal weights are determined through the stationary variogram model which accounts...
Effects of sucker gigging on fish populations in Oklahoma scenic rivers
D. Zetner, D. E. Shoup, Shannon K. Brewer
2023, Cooperator Science Series FWS/CSS-151-2023
Suckers (Catostomidae) are ecologically important, and some support popular fisheries, despite not being considered ‘sport fish’ in most states. Gigging suckers is a popular and culturally significant pastime in the Ozark Highlands, but little is known about the effect of gigging harvest on population dynamics of suckers. Therefore, research is...
DisasterNet: Causal Bayesian networks with normalizing flows for cascading hazards
Xuechun Li, Paula Madeline Burgi, Wei Ma, Haeyoung Noh, David J. Wald, Susu Xu
2023, Conference Paper, KDD '23: Proceedings of the 29th ACM SIGKDD conference on knowledge discovery and data mining
Sudden-onset hazards like earthquakes often induce cascading secondary hazards (e.g., landslides, liquefaction, debris flows, etc.) and subsequent impacts (e.g., building and infrastructure damage) that cause catastrophic human and economic losses. Rapid and accurate estimates of these hazards and impacts are critical for timely and effective post-disaster responses. Emerging remote sensing...
Response in the water quality of Delavan Lake, Wisconsin, to changes in phosphorus loading—Setting new goals for loading from its drainage basin
Dale M. Robertson, Benjamin J. Siebers, Reed A. Fredrick
2023, Scientific Investigations Report 2023-5073
During 1989–92, an extensive rehabilitation project was completed in and around Delavan Lake, Wisconsin, to improve the lake’s water quality. However, in 2016, the lake was listed by the Wisconsin Department of Natural Resources as impaired for excessive algal growth (high chlorophyll a concentrations), and high phosphorus input was listed...
Estimating streambed hydraulic conductivity for selected streams in the Mississippi Alluvial Plain using continuous resistivity profiling methods—Delta region
Ryan F. Adams, Benjamin Miller, Wade H. Kress, Burke J. Minsley, James R. Rigby
2023, Scientific Investigations Map 3500
Introduction The Mississippi Alluvial Plain is one of the most important agricultural regions in the United States, and crop productivity relies on groundwater irrigation from an aquifer system whose full capacity is unknown. Groundwater withdrawals from the Mississippi River Valley alluvial aquifer have resulted in substantial groundwater-level declines and reductions...
Development and application of a qPCR-based genotyping assay for Ophidiomyces ophidiicola to investigate the epidemiology of ophidiomycosis
Ellen Haynes, Jeffrey M. Lorch, Matthew C. Allender
2023, PLoS ONE (18)
Ophidiomycosis (snake fungal disease) is an infectious disease caused by the fungus Ophidiomyces ophidiicola to which all snake species appear to be susceptible. Significant variation has been observed in clinical presentation, progression of disease, and response to treatment, which may be due to genetic variation in the causative agent. Recent phylogenetic analysis...
Tracking carbon from subduction to outgassing along the Aleutian-Alaska Volcanic Arc
Taryn Lopez, Tobias P. Fischer, Terry Plank, Alberto Malinverno, Andrea Rizzo, Daniel J. Rasmussen, Elizabeth Cottrell, Cynthia Werner, Christoph Kern, Deborah Bergfeld, Tehnuka Ilanko, Janine L. Andrys, Katherine A. Kelley
2023, Science Advances (9)
Subduction transports volatiles between Earth’s mantle, crust, and atmosphere, ultimately creating a habitable Earth. We use isotopes to track carbon from subduction to outgassing along the Aleutian-Alaska Arc. We find substantial along-strike variations in the isotopic composition of volcanic gases, explained by different recycling efficiencies of subducting carbon to the...
Long short-term memory models to quantify long-term evolution of streamflow discharge and groundwater depth in Alabama
Hossein Gholizadeh, Yong Zhang, Jonathan Frame, Xiufen Gu, Christopher Green
2023, Science of the Total Environment (901)
Long short-term memory (LSTM) models have been shown to be efficient for rainfall-runoff modeling, and to a lesser extent, for groundwater depth forecasting. In this study, LSTMs were applied to quantify the spatiotemporal evolution of surface and subsurface hydrographs in Alabama in the Southeastern United States,...
Biophysical factors control invasive annual grass hot spots in the Mojave Desert
Tanner Corless Smith, Tara B.B. Bishop, Michael C. Duniway, Miguel L. Villarreal, Anna C. Knight, Seth M. Munson, Eric K. Waller, Ryan Jensen, Richard A. Gill
2023, Biological Invasions (25) 3839-3859
Invasive annual grasses can promote ecosystem state changes and habitat loss in the American Southwest. Non-native annual grasses such as Bromus spp. and Schismus spp. have invaded the Mojave Desert and degraded habitat through increased fire occurrence, severity, and shifting plant community composition. Thus, it is important to identify and...
A seasonally ice-free Arctic Ocean during the Last Interglacial
Flor Vermassen, Matt O’Regan, Agatha de Boer, Freederik Schenk, Mohammad Razmjooei, Gabriel West, Thomas M. Cronin, Martin Jakobsson, Helen Coxall
2023, Nature Geoscience (16) 723-729
The extent and seasonality of Arctic sea ice during the Last Interglacial (129,000 to 115,000 years before present) is poorly known. Sediment-based reconstructions have suggested extensive ice cover in summer, while climate model outputs indicate year-round conditions in the Arctic Ocean ranging from ice free to...
Evidence of population-level impacts and resiliency for Gulf of Mexico shelf taxa following the Deepwater Horizon oil spill
W.F. Patterson, K.L. Robinson, B.K. Barnett, M. Campbell, D.C. Chagaris, J. P. Chanton, K. Daly, D. Hanisko, F. Hernandez, S.A. Murawski, A.G. Pollock, D. Portnoy, Erin L. Pulster
2023, Frontiers in Marine Science (10)
The goal of this paper was to review the evidence of population-level impacts of the Deepwater Horizon Oil Spill (DWH) on Gulf of Mexico (GOM) continental shelf taxa, as well as evidence of resiliency following the DWH. There is considerable environmental and biological evidence that GOM shelf taxa were exposed to...
Bayesian spatio-temporal survival analysis for all types of censoring with application to a wildlife disease study
Kehui Yao, Jun Zhu, Daniel J. O'Brien, Daniel P. Walsh
2023, Environmetrics (34)
In this article, we consider modeling arbitrarily censored survival data with spatio-temporal covariates. We demonstrate that under the piecewise constant hazard function, the likelihood for uncensored or right-censored subjects is proportional to the likelihood of multiple conditionally independent Poisson random variables. To address left- or interval-censored subjects, we propose to...
Understanding drivers of mercury in lake trout (Salvelinus namaycush), a top-predator fish in southwest Alaska's parklands
Krista K. Bartz, Michael P. Hannam, Tammy L. Wilson, Ryan F. Lepak, Jacob M. Ogorek, Daniel Young, Collin A. Eagles-Smith, David P. Krabbenhoft
2023, Environmental Pollution (330)
Mercury (Hg) is a widespread element and persistent pollutant, harmful to fish, wildlife, and humans in its organic, methylated form. The risk of Hg contamination is driven by factors that regulate Hg loading, methylation, bioaccumulation, and biomagnification. In remote locations, with infrequent access and limited data, understanding the relative importance...
The During Nearshore Event Experiment (DUNEX): A collaborative coastal community experiment to address coastal resilience
Jessamin A. Straub, Mary A. Cialone, Britt Raubenheimer, Jenna A. Brown, Nicole Elko, Katherine L. Brodie
2023, Shore & Beach (91) 23-29
The During Nearshore Event Experiment (DUNEX) was a large-scale coastal field effort focused on improving understanding of during-storm nearshore processes to ultimately develop predictive technologies, engineering solutions, and actions to enhance coastal resilience. The experiments were conducted on the North Carolina coast by a multidisciplinary group of over 30 research...