Fluid spatial dynamics of West Nile virus in the USA: Rapid spread in a permissive host environment
Francesca Di Giallonardo, Jemma L. Geoghegan, Douglas E. Docherty, Robert G. McLean, Michael C. Zody, James Qu, Xiao Yang, Bruce W. Birren, Christine M. Malboeuf, R. Newman, S. Ip, Edward C. Holmes
2016, Journal of Virology (90) 862-872
The introduction of West Nile virus (WNV) into North America in 1999 is a classical example of viral emergence in a new environment, with its subsequent dispersion across the continent having a major impact on local bird populations. Despite the importance of this epizootic, the pattern, dynamics and determinants of...
Prototypic automated continuous recreational water quality monitoring of nine Chicago beaches
Dawn Shively, Meredith Nevers, Cathy Breitenbach, Mantha S. Phanikumar, Kasia Przybyla-Kelly, Ashley M. Spoljaric, Richard L. Whitman
2016, Journal of Environmental Management (166) 285-293
Predictive empirical modeling is used in many locations worldwide as a rapid, alternative recreational water quality management tool to eliminate delayed notifications associated with traditional fecal indicator bacteria (FIB) culturing (referred to as the persistence model, PM) and to prevent errors in releasing swimming advisories. The goal of this study...
Integrating spatially explicit indices of abundance and habitat quality: an applied example for greater sage-grouse management
Peter S. Coates, Michael L. Casazza, Mark A. Ricca, Brianne E. Brussee, Erik J. Blomberg, K. Benjamin Gustafson, Cory T. Overton, Dawn M. Davis, Lara E. Niell, Shawn P. Espinosa, Scott C. Gardner, David J. Delehanty
2016, Journal of Applied Ecology (53) 83-95
Predictive species distributional models are a cornerstone of wildlife conservation planning. Constructing such models requires robust underpinning science that integrates formerly disparate data types to achieve effective species management. Greater sage-grouse Centrocercus urophasianus, hereafter “sage-grouse” populations are declining throughout sagebrush-steppe ecosystems in North America, particularly within the Great Basin, which...
Effects of harvesting forest biomass on water and climate regulation services: A synthesis of long-term ecosystem experiments in eastern North America
Jesse Caputo, Colin D Beier, Peter M Groffman, Douglas A. Burns, Frederick D Beall, Paul W. Hazlett, Thad E Yorks
2016, Ecosystems (19) 271-283
Demand for woody biomass fuels is increasing amidst concerns about global energy security and climate change, but there may be negative implications of increased harvesting for forest ecosystem functions and their benefits to society (ecosystem services). Using new methods for assessing ecosystem services based on long-term experimental research,...
Engagement with indigenous peoples and honoring traditional knowledge systems
Julie Maldonado, Bull Bennett, Karletta Chief, Patricia Cochran, Karen Cozetto, Bob Gough, Margaret M. Hiza-Redsteer, Kathy Lynn, Nancy Maynard, Garrit Voggesser
2016, Climatic Change (135) 111-126
The organizers of the 2014 US National Climate Assessment (NCA) made a concerted effort to reach out to and collaborate with Indigenous peoples, resulting in the most comprehensive information to date on climate change impacts to Indigenous peoples in a US national assessment. Yet, there is still much...
A dynamic population model to investigate effects of climate and climate-independent factors on the lifecycle of the tick Amblyomma americanum (Acari: Ixodidae)
Antoinette Ludwig, Howard S. Ginsberg, Graham J. Hickling, Nicholas H. Ogden
2016, Journal of Medical Entomology (53) 99-115
The lone star tick, Amblyomma americanum, is a disease vector of significance for human and animal health throughout much of the eastern United States. To model the potential effects of climate change on this tick, a better understanding is needed of the relative roles of temperature-dependent and temperature-independent (day-length-dependent behavioral...
Using occupancy modeling and logistic regression to assess the distribution of shrimp species in lowland streams, Costa Rica: Does regional groundwater create favorable habitat?
Marcia Snyder, Mary Freeman, S. Thomas Purucker, Catherine M. Pringle
2016, Freshwater Science (35) 80-90
Freshwater shrimps are an important biotic component of tropical ecosystems. However, they can have a low probability of detection when abundances are low. We sampled 3 of the most common freshwater shrimp species, Macrobrachium olfersii, Macrobrachium carcinus, and Macrobrachium heterochirus, and used occupancy modeling and logistic regression models to improve our limited...
Novel and lost forests in the Upper Midwestern United States, from new estimates of settlement-era composition, stem density, and biomass
Simon Goring, David J. Mladenoff, Charles Cogbill, Sydne Record, Christopher J. Paciorek, Michael C. Dietze, Andria Dawson, Jaclyn Matthes, Jason S. McLachlan, John W. Williams
2016, PLoS ONE (11)
EuroAmerican land-use and its legacies have transformed forest structure and composition across the United States (US). More accurate reconstructions of historical states are critical to understanding the processes governing past, current, and future forest dynamics. Here we present new gridded (8x8km) reconstructions of pre-settlement (1800s) forest composition and structure from...
Metabolism correlates with variation in post-natal growth rate among songbirds at three latitudes
Riccardo Ton, Thomas E. Martin
2016, Functional Ecology (30) 743-748
1. Variation in post-natal growth rates is substantial among organisms and especially strong among latitudes because tropical and south temperate species typically have slower growth than north temperate relatives. Metabolic rate is thought to be a critical mechanism underlying growth rates after accounting for allometric effects of body mass. However,...
Population trends, bend use relative to available habitat and within-river-bend habitat use of eight indicator species of Missouri and Lower Kansas River benthic fishes: 15 years after baseline assessment
Mark L. Wildhaber, Wen-Hsi Yang, Ali Arab
2016, River Research and Applications (32) 36-65
A baseline assessment of the Missouri River fish community and species-specific habitat use patterns conducted from 1996 to 1998 provided the first comprehensive analysis of Missouri River benthic fish population trends and habitat use in the Missouri and Lower Yellowstone rivers, exclusive of reservoirs, and provided the foundation for the...
Mycobacterial infection in Northern snakehead (Channa argus) from the Potomac River catchment
Christine L. Densmore, Luke R. Iwanowicz, Anne Henderson, Deborah D. Iwanowicz, J.S. Odenkirk
2016, Journal of Fish Diseases (39) 771-775
The Northern snakehead, Channa argus (Cantor), is a non-native predatory fish that has become established regionally in some temperate freshwater habitats within the United States. Over the past decade, Northern snakehead populations have developed within aquatic ecosystems throughout the eastern USA, including the Potomac River system within Virginia, Maryland and Washington, D.C....
Relating mesocarnivore relative abundance to anthropogenic land-use with a hierarchical spatial count model
Shawn M. Crimmins, Liza R. Walleser, Dan R. Hertel, Patrick C. McKann, Jason J. Rohweder, Wayne E. Thogmartin
2016, Ecography (39) 524-532
There is growing need to develop models of spatial patterns in animal abundance, yet comparatively few examples of such models exist. This is especially true in situations where the abundance of one species may inhibit that of another, such as the intensively-farmed landscape of the Prairie Pothole Region (PPR) of...
Measuring spatial variation in secondary production and food quality using a common consumer approach in Lake Erie
James H. Larson, William B. Richardson, Mary Anne Evans, Jeff Schaeffer, Timothy Wynne, Michelle Bartsch, Lynn Bartsch, J. C. Nelson, Jon M. Vallazza
2016, Ecological Applications (26) 873-885
Lake Erie is a large lake straddling the border of the U.S. and Canada that has become increasingly eutrophic in recent years. Eutrophication is particularly focused in the shallow western basin. The western basin of Lake Erie is hydrodynamically similar to a large estuary, with riverine inputs from the Detroit...
Environmental controls on spatial patterns in the long-term persistence of giant kelp in central California
Mary Alida Young, Kyle C. Cavanaugh, Tom W. Bell, Peter T. Raimondi, Christopher A. Edwards, Patrick T. Drake, Li H. Erikson, Curt D. Storlazzi
2016, Ecology (86) 45-60
As marine management is moving towards the practice of protecting static areas, it is 44 important to make sure protected areas capture and protect persistent populations. Rocky reefs in 45 many temperate areas worldwide serve as habitat for canopy forming macroalgae and these 46 structure forming species of kelps (order...
The Iquique earthquake sequence of April 2014: Bayesian modeling accounting for prediction uncertainty
Zacharie Duputel, Junle Jiang, Romain Jolivet, Mark Simons, Luis Rivera, Jean-Paul Ampuero, Bryan Riel, Susan E Owen, Angelyn W Moore, Sergey V Samsonov, Francisco Ortega Culaciati, Sarah E. Minson
2016, Geophysical Research Letters (42) 7949-7957
The subduction zone in northern Chile is a well-identified seismic gap that last ruptured in 1877. On 1 April 2014, this region was struck by a large earthquake following a two week long series of foreshocks. This study combines a wide range of observations, including geodetic, tsunami, and...
Generic reclassification and species boundaries in the rediscovered freshwater mussel ‘Quadrula’ mitchelli (Simpson in Dall, 1896)
John M. Pfeiffer III, Nathan A. Johnson, Charles R. Randklev, Robert G. Howells, James D. Williams
2016, Conservation Genetics (17) 279-292
The Central Texas endemic freshwater mussel, Quadrula mitchelli (Simpson in Dall, 1896), had been presumed extinct until relict populations were recently rediscovered. To help guide ongoing and future conservation efforts focused on Q. mitchelli we set out to resolve several uncertainties regarding its evolutionary history, specifically its unknown generic...
Assessing accuracy and precision for field and laboratory data: a perspective in ecosystem restoration
Martin A. Stapanian, Timothy E Lewis, Craig J. Palmer, Molly Middlebrook Amos
2016, Restoration Ecology (24) 18-26
Unlike most laboratory studies, rigorous quality assurance/quality control (QA/QC) procedures may be lacking in ecosystem restoration (“ecorestoration”) projects, despite legislative mandates in the United States. This is due, in part, to ecorestoration specialists making the false assumption that some types of data (e.g. discrete variables such as species identification and...
An evaluation of unsupervised and supervised learning algorithms for clustering landscape types in the United States
Jochen Wendel, Barbara P. Buttenfield, Larry V. Stanislawski
2016, Cartography and Geographic Information Science (43) 233-249
Knowledge of landscape type can inform cartographic generalization of hydrographic features, because landscape characteristics provide an important geographic context that affects variation in channel geometry, flow pattern, and network configuration. Landscape types are characterized by expansive spatial gradients, lacking abrupt changes between adjacent classes; and as having a limited number...
Animal movement constraints improve resource selection inference in the presence of telemetry error
Brian M. Brost, Mevin Hooten, Ephraim M. Hanks, Robert J. Small
2016, Ecology (96) 2590-2597
Multiple factors complicate the analysis of animal telemetry location data. Recent advancements address issues such as temporal autocorrelation and telemetry measurement error, but additional challenges remain. Difficulties introduced by complicated error structures or barriers to animal movement can weaken inference. We propose an approach for obtaining resource selection inference from...
Evaluating abundance and trends in a Hawaiian avian community using state-space analysis
Richard J. Camp, Kevin W. Brinck, P. M. Gorresen, Eben H. Paxton
2016, Bird Conservation International (26) 225-242
Estimating population abundances and patterns of change over time are important in both ecology and conservation. Trend assessment typically entails fitting a regression to a time series of abundances to estimate population trajectory. However, changes in abundance estimates from year-to-year across time are due to both true variation in population...
A new method for discovering behavior patterns among animal movements
Y. Wang, Ze Luo, John Y. Takekawa, Diann J. Prosser, Y. Xiong, S. Newman, X. Xiao, N. Batbayar, Kyle A. Spragens, S. Balachandran, B. Yan
2016, International Journal of Geographical Information Science (30) 929-947
Advanced satellite tracking technologies enable biologists to track animal movements at fine spatial and temporal scales. The resultant data present opportunities and challenges for understanding animal behavioral mechanisms. In this paper, we develop a new method to elucidate animal movement patterns from tracking data. Here, we propose the notion of...
Human activities cause distinct dissolved organic matter composition across freshwater ecosystems
Clayton J. Williams, Paul C. Frost, Ana M. Morales-Williams, James H. Larson, William B. Richardson, Aisha S. Chiandet, Marguerite A. Xenopoulos
2016, Global Change Biology (22) 613-626
Dissolved organic matter (DOM) composition in freshwater ecosystems is influenced by interactions between physical, chemical, and biological processes that are controlled, at one level, by watershed landscape, hydrology, and their connections. Against this environmental template, humans may strongly influence DOM composition. Yet, we lack a comprehensive understanding of DOM composition...
Precipitation regime classification for the Mojave Desert: Implications for fire occurrence
Jerry Tagestad, Matthew L. Brooks, Valerie Cullinan, Janelle Downs, Randy McKinley
2016, Journal of Arid Environments (124) 388-397
Long periods of drought or above-average precipitation affect Mojave Desert vegetation condition, biomass and susceptibility to fire. Changes in the seasonality of precipitation alter the likelihood of lightning, a key ignition source for fires. The objectives of this study were to characterize the relationship between recent, historic, and future precipitation...
Blind identification of the Millikan Library from earthquake data considering soil–structure interaction
S. F. Ghahari, F. Abazarsa, O. Avci, Mehmet Çelebi, E. Taciroglu
2016, Structural Control and Health Monitoring (23) 684-706
The Robert A. Millikan Library is a reinforced concrete building with a basement level and nine stories above the ground. Located on the campus of California Institute of Technology (Caltech) in Pasadena California, it is among the most densely instrumented buildings in the U.S. From the early dates of its...
Seasonal temperature and precipitation regulate brook trout young-of-the-year abundance and population dynamics
Yoichiro Kanno, Kasey C. Pregler, Nathaniel P. Hitt, Benjamin Letcher, Daniel Hocking, John E. B. Wofford
2016, Freshwater Biology (61) 88-99
Abundance of the young‐of‐the‐year (YOY) fish can vary greatly among years and it may be driven by several key biological processes (i.e. adult spawning, egg survival and fry survival) that span several months. However, the relative influence of seasonal weather patterns on YOY abundance is poorly understood.We assessed the...