Hydrographic surveys of the Missouri and Yellowstone Rivers at selected bridges and through Bismarck, North Dakota, during the 2011 flood
Brenda K. Densmore, Kellan R. Strauch, Benjamin J. Dietsch
2013, Scientific Investigations Report 2013-5087
The U.S. Geological Survey (USGS), in cooperation with the North Dakota Department of Transportation and the North Dakota State Water Commission, completed hydrographic surveys at six Missouri River bridges and one Yellowstone River bridge during the 2011 flood of the Missouri River system. Bridges surveyed are located near the cities...
How does pedogenesis drive plant diversity?
Etienne Laliberte, James B. Grace, Michael A. Huston, Hans Lambers, Francois P. Teste, Benjamin L. Turner, David A. Wardle
2013, Trends in Ecology and Evolution (28) 331-340
Some of the most species-rich plant communities occur on ancient, strongly weathered soils, whereas those on recently developed soils tend to be less diverse. Mechanisms underlying this well-known pattern, however, remain unresolved. Here, we present a conceptual model describing alternative mechanisms by which pedogenesis (the process of soil formation) might...
Analysis of 1997–2008 groundwater level changes in the upper Deschutes Basin, Central Oregon
Marshall W. Gannett, Kenneth E. Lite Jr.
2013, Scientific Investigations Report 2013-5092
Groundwater-level monitoring in the upper Deschutes Basin of central Oregon from 1997 to 2008 shows water-level declines in some places that are larger than might be expected from climate variations alone, raising questions regarding the influence of groundwater pumping, canal lining (which decreases recharge), and other human influences. Between the...
Evaluation of stream chemistry trends in US Geological Survey reference watersheds, 1970-2010
M. Alisa Mast
2013, Environmental Monitoring and Assessment (185) 9343-9359
The Hydrologic Benchmark Network (HBN) is a long-term monitoring program established by the US Geological Survey in the 1960s to track changes in the streamflow and stream chemistry in undeveloped watersheds across the USA. Trends in stream chemistry were tested at 15 HBN stations over two periods (1970–2010 and 1990–2010)...
Winter climate change and coastal wetland foundation species: Salt marshes vs. mangrove forests in the southeastern United States
Michael J. Osland, Richard H. Day, Thomas W. Doyle, Nicholas Enwright
2013, Global Change Biology (19) 1482-1494
We live in an era of unprecedented ecological change in which ecologists and natural resource managers are increasingly challenged to anticipate and prepare for the ecological effects of future global change. In this study, we investigated the potential effect of winter climate change upon salt marsh and mangrove forest foundation...
Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping paired-end RAD sequencing
Paul A. Hohenlohe, Mitch D. Day, Stephen J. Amish, Michael R. Miller, Nick Kamps-Hughes, Matthew C. Boyer, Clint C. Muhlfeld, Fred W. Allendorf, Eric A. Johnson, Gordon Luikart
2013, Molecular Ecology (22) 3002-3013
Rapid and inexpensive methods for genomewide single nucleotide polymorphism (SNP) discovery and genotyping are urgently needed for population management and conservation. In hybridized populations, genomic techniques that can identify and genotype thousands of species-diagnostic markers would allow precise estimates of population- and individual-level admixture as well as identification of 'super...
Foraging area fidelity for Kemp's ridleys in the Gulf of Mexico
Donna J. Shaver, Kristen M. Hart, Ikuko Fujisaki, Cynthia Rubio, Autumn R. Sartain-Iverson, Jaime Peña, Patrick M. Burchfield, Daniel Gomez Gamez, Jaime Ortiz
2013, Ecology and Evolution (3) 2002-2012
For many marine species, locations of key foraging areas are not well defined. We used satellite telemetry and switching state-space modeling (SSM) to identify distinct foraging areas used by Kemp's ridley turtles (Lepidochelys kempii) tagged after nesting during 1998–2011 at Padre Island National Seashore, Texas, USA (PAIS; N = 22),...
Complex spatial dynamics maintain northern leopard frog (Lithobates pipiens) genetic diversity in a temporally varying landscape
David M. Mushet, Ned H. Euliss Jr., Yongjiu Chen, Craig A. Stockwell
2013, Herpetological Conservation and Biology (8) 163-175
In contrast to most local amphibian populations, northeastern populations of the Northern Leopard Frog (Lithobates pipiens) have displayed uncharacteristically high levels of genetic diversity that have been attributed to large, stable populations. However, this widely distributed species also occurs in areas known for great climatic fluctuations that should be reflected...
Reserve growth of oil and gas fields—Investigations and applications
Troy A. Cook
2013, Scientific Investigations Report 2013-5063
The reserve growth of fields has been a topic for ongoing discussion for over half a century and will continue to be studied well into the future. This is due to the expected size of the volumetric contribution of reserve growth to the future supply of oil and natural gas....
Transport of nitrogen in a treated-wastewater plume to coastal discharge areas, Ashumet Valley, Cape Cod, Massachusetts
Jeffrey R. Barbaro, Donald A. Walter, Denis R. LeBlanc
2013, Scientific Investigations Report 2013-5061
Land disposal of treated wastewater from a treatment plant on the Massachusetts Military Reservation in operation from 1936 to 1995 has created a plume of contaminated groundwater that is migrating toward coastal discharge areas in the town of Falmouth, Massachusetts. To develop a better understanding of the potential impact of...
USGS Arctic Ocean carbon cruise 2011: field activity H-01-11-AR to collect carbon data in the Arctic Ocean, August - September 2011
Lisa L. Robbins, Kimberly K. Yates, Paul O. Knorr, Jonathan Wynn, John Lisle, Brian J. Buczkowski, Barbara Moore, Larry Mayer, Andrew Armstrong, Robert H. Byrne, Xuewu Liu
2013, Data Series 748
Carbon dioxide (CO2) in the atmosphere is absorbed at the surface of the ocean by reacting with seawater to form a weak, naturally occurring acid called carbonic acid. As atmospheric carbon dioxide increases, the concentration of carbonic acid in seawater also increases, causing a decrease in ocean pH and carbonate...
USGS Arctic Ocean carbon cruise 2010: field activity H-03-10-AR to collect carbon data in the Arctic Ocean, August - September 2010
Lisa L. Robbins, Kimberly K. Yates, Matthew D. Gove, Paul O. Knorr, Jonathan Wynn, Robert H. Byrne, Xuewu Liu
2013, Data Series 741
Carbon dioxide (CO2) in the atmosphere is absorbed at the surface of the ocean by reacting with seawater to form carbonic acid, a weak, naturally occurring acid. As atmospheric carbon dioxide increases, the concentration of carbonic acid in seawater also increases, causing a decrease in ocean pH and carbonate mineral...
Efficacy of trap modifications for increasing capture rates of aquatic snakes in floating aquatic funnel traps
Brian J. Halstead, Glenn D. Wylie, Michael L. Casazza
2013, Herpetological Conservation and Biology (8) 65-74
Increasing detection and capture probabilities of rare or elusive herpetofauna of conservation concern is important to inform the scientific basis for their management and recovery. The Giant Gartersnake (Thamnophis gigas) is an example of a secretive, wary, and generally difficult-to-sample species about which little is known regarding its patterns of...
Gaussian process regression for sensor networks under localization uncertainty
M. Jadaliha, Yunfei Xu, Jongeun Choi, N.S. Johnson, Weiming Li
2013, IEEE Transactions on Signal Processing (61) 223-237
In this paper, we formulate Gaussian process regression with observations under the localization uncertainty due to the resource-constrained sensor networks. In our formulation, effects of observations, measurement noise, localization uncertainty, and prior distributions are all correctly incorporated in the posterior predictive statistics. The analytically intractable posterior predictive statistics are proposed...
Organic waste compounds in streams: Occurrence and aquatic toxicity in different stream compartments, flow regimes, and land uses in southeast Wisconsin, 2006–9
Austin K. Baldwin, Steven R. Corsi, Kevin D. Richards, Steven W. Geis, Christopher Magruder
2013, Scientific Investigations Report 2013-5104
An assessment of organic chemicals and aquatic toxicity in streams located near Milwaukee, Wisconsin, indicated high potential for adverse impacts on aquatic organisms that could be related to organic waste compounds (OWCs). OWCs used in agriculture, industry, and households make their way into surface waters through runoff, leaking septic-conveyance systems,...
Alaska Geochemical Database, Version 2.0 (AGDB2)--including “best value” data compilations for rock, sediment, soil, mineral, and concentrate sample media
Matthew Granitto, Jeanine M. Schmidt, Nora B. Shew, Bruce M. Gamble, Keith A. Labay
2013, Data Series 759
The Alaska Geochemical Database Version 2.0 (AGDB2) contains new geochemical data compilations in which each geologic material sample has one “best value” determination for each analyzed species, greatly improving speed and efficiency of use. Like the Alaska Geochemical Database (AGDB, http://pubs.usgs.gov/ds/637/) before it, the AGDB2 was created and designed to...
Fine-grained sediment dispersal along the California coast
Jonathan A. Warrick, Curt D. Storlazzi
2013, Fact Sheet 2013-3023
Fine-grained sediment (silt and clay) enters coastal waters from rivers, eroding coastal bluffs, resuspension of seabed sediment, and human activities such as dredging and beach nourishment. The amount of sediment in coastal waters is an important factor in ocean ecosystem health, but little information exists on both the natural and...
Final report for sea-level rise response modeling for San Francisco Bay estuary tidal marshes
John Y. Takekawa, Karen M. Thorne, Kevin Buffington, Kyle A. Spragens, Kathleen M. Swanson, Judith Z. Drexler, David H. Schoellhamer, Cory T. Overton, Michael L. Casazza
2013, Open-File Report 2013-1081
The International Panel on Climate Change has identified coastal ecosystems as areas that will be disproportionally affected by climate change. Current sea-level rise projections range widely with 0.57 to 1.9 meters increase in mea sea level by 2100. The expected accelerated rate of sea-level rise through the 21st century will...
Automated mapping of mineral groups and green vegetation from Landsat Thematic Mapper imagery with an example from the San Juan Mountains, Colorado
Barnaby W. Rockwell
2013, Scientific Investigations Map 3252
Multispectral satellite data acquired by the ASTER (Advanced Spaceborne Thermal Emission and Reflection Radiometer) and Landsat 7 Enhanced Thematic Mapper Plus (TM) sensors are being used to populate an online Geographic Information System (GIS) of the spatial occurrence of mineral groups and green vegetation across the western conterminous United States...
A conceptual hydrogeologic model for the hydrogeologic framework, geochemistry, and groundwater-flow system of the Edwards-Trinity and related aquifers in the Pecos County region, Texas
Jonathan V. Thomas, Gregory P. Stanton, Johnathan R. Bumgarner, Daniel K. Pearson, Andrew Teeple, Natalie A. Houston, Jason Payne, MaryLynn Musgrove
2013, Fact Sheet 2013-3024
The Edwards-Trinity aquifer is a vital groundwater resource for agricultural, industrial, and municipal uses in the Trans-Pecos region of west Texas. A conceptual model of the hydrogeologic framework, geochemistry, and groundwater-flow system in the 4,700 square-mile study area was developed by the U.S. Geological Survey (USGS) in cooperation with the...
The use of process models to inform and improve statistical models of nitrate occurrence, Great Miami River Basin, southwestern Ohio
Donald A. Walter, J. Jeffrey Starn
2013, Scientific Investigations Report 2012-5001
Statistical models of nitrate occurrence in the glacial aquifer system of the northern United States, developed by the U.S. Geological Survey, use observed relations between nitrate concentrations and sets of explanatory variables—representing well-construction, environmental, and source characteristics— to predict the probability that nitrate, as nitrogen, will exceed a threshold concentration....
Marsh wrens as bioindicators of mercury in wetlands of Great Salt Lake: do blood and feathers reflect site-specific exposure risk to bird reproduction?
C. Alex Hartman, Joshua T. Ackerman, Garth Herring, John Isanhart, Mark P. Herzog
2013, Environmental Science & Technology (47) 6597-6605
Nonlethal sampling of bird blood and feathers are among the more common ways of estimating the risk of mercury exposure to songbird reproduction. The implicit assumption is that mercury concentrations in blood or feathers of individuals captured in a given area are correlated with mercury concentrations in eggs from the...
Solid-phase data from cores at the proposed Dewey Burdock uranium in-situ recovery mine, near Edgemont, South Dakota
Raymond H. Johnson, Sharon F. Diehl, William Benzel
2013, Open-File Report 2013-1093
This report releases solid-phase data from cores at the proposed Dewey Burdock uranium in-situ recovery site near Edgemont, South Dakota. These cores were collected by Powertech Uranium Corporation, and material not used for their analyses were given to the U.S. Geological Survey for additional sampling and analyses. These additional analyses...
Evidence for extensive methane venting on the southeastern U.S. Atlantic margin
L.L. Brothers, C.L. Van Dover, C.R. German, C.L. Kaiser, D.R. Yoerger, C.D. Ruppel, E. Lobecker, A.D. Skarke, J.K.S. Wagner
2013, Geology (41) 807-810
We present the first evidence for widespread seabed methane venting along the southeastern United States Atlantic margin beyond the well-known Blake Ridge diapir seep. Recent ship- and autonomous underwater vehicle (AUV)–collected data resolve multiple water-column anomalies (>1000 m height) and extensive new chemosynthetic seep communities at the Blake Ridge and...
Frequent cross-species transmission of parvoviruses among diverse carnivore hosts
Andrew B. Allison, Dennis J. Kohler, Karen A. Fox, Justin D. Brown, Richard W. Gerhold, Valerie I. Shearn-Bochsler, Edward J. Dubovi, Colin R. Parrish, Edward C. Holmes
2013, Journal of Virology (87) 2342-2347
Although parvoviruses are commonly described in domestic carnivores, little is known about their biodiversity in nondomestic species. A phylogenetic analysis of VP2 gene sequences from puma, coyote, gray wolf, bobcat, raccoon, and striped skunk revealed two major groups related to either feline panleukopenia virus (“FPV-like”) or canine parvovirus (“CPV-like”). Cross-species...