Aboveground allometric models for freeze-affected black mangroves (Avicennia germinans): Equations for a climate sensitive mangrove-marsh ecotone
Michael J. Osland, Richard H. Day, Jack C. Larriviere, Andrew S. From
2014, PLoS ONE (9)
Across the globe, species distributions are changing in response to climate change and land use change. In parts of the southeastern United States, climate change is expected to result in the poleward range expansion of black mangroves (Avicennia germinans) at the expense of some salt marsh vegetation. The morphology of A....
Modeling turbidity type and intensity effects on the growth and starvation mortality of age-0 yellow perch
Nathan M Manning, Jonathan M. Bossenbroek, Christine M. Mayer, David B. Bunnell, Jeff T. Tyson, Lars G. Rudstam, James R. Jackson
2014, Canadian Journal of Fisheries and Aquatic Sciences (71) 1544-1553
We sought to quantify the possible population-level influence of sediment plumes and algal blooms on yellow perch (Perca flavescens), a visual predator found in systems with dynamic water clarity. We used an individual-based model (IBM), which allowed us to include variance in water clarity and the distribution of individual sizes....
Differentiating moss from higher plants is critical in studying the carbon cycle of the boreal biome
Wenping Yuan, Shuguang Liu, Wenjie Dong, Shunlin Liang, Shuqing Zhao, Jingming Chen, Wenfang Xu, Xianglan Li, Alan Barr, T. Andrew Black, Wende Yan, Michael Goulden, Liisa Kulmala, Anders Lindroth, Hank A. Margolis, Yojiro Matsuura, Eddy Moors, Michiel van der Molen, Takeshi Ohta, Kim Pilegaard, Andrej Varlagin, Timo Vesala
2014, Nature Communications (5)
The satellite-derived normalized difference vegetation index (NDVI), which is used for estimating gross primary production (GPP), often includes contributions from both mosses and vascular plants in boreal ecosystems. For the same NDVI, moss can generate only about one-third of the GPP that vascular plants can because of its much lower...
Interpretation of high-resolution imagery for detecting vegetation cover composition change after fuels reduction treatments in woodlands
Jason W. Karl, Jeffrey K. Gillan, Nichole N. Barger, Jeffrey E. Herrick, Michael C. Duniway
2014, Ecological Indicators (45) 570-578
The use of very high resolution (VHR; ground sampling distances < ∼5 cm) aerial imagery to estimate site vegetation cover and to detect changes from management has been well documented. However, as the purpose of monitoring is to document change over time, the ability to detect changes from imagery at...
Testing for multiple invasion routes and source populations for the invasive brown treesnake (Boiga irregularis) on Guam: implications for pest management
Jonathan Q. Richmond, Dustin A. Wood, James W. Stanford, Robert N. Fisher
2014, Biological Invasions
The brown treesnake (Boiga irregularis) population on the Pacific island of Guam has reached iconic status as one of the most destructive invasive species of modern times, yet no published works have used genetic data to identify a source population. We used DNA sequence data from multiple genetic markers and...
The response of stream periphyton to Pacific salmon: using a model to understand the role of environmental context
J. Ryan Bellmore, Alexander K. Fremier, Francine Mejia, Michael Newsom
2014, Freshwater Biology (59) 1437-1451
1. In stream ecosystems, Pacific salmon deliver subsidies of marine-derived nutrients and disturb the stream bed during spawning. The net effect of this nutrient subsidy and physical disturbance on biological communities can be hard to predict and is likely to be mediated by environmental conditions. For periphyton, empirical studies have...
Analysis of induced seismicity in geothermal reservoirs – An overview
Arno Zang, Volker Oye, Philippe Jousset, Nicholas Deichmann, Roland Gritto, Arthur F. McGarr, Ernest Majer, David Bruhn
2014, Geothermics (52) 6-21
In this overview we report results of analysing induced seismicity in geothermal reservoirs in various tectonic settings within the framework of the European Geothermal Engineering Integrating Mitigation of Induced Seismicity in Reservoirs (GEISER) project. In the reconnaissance phase of a field, the subsurface fault mapping, in situ stress and the seismic network are of primary...
The earthquake cycle in the San Francisco Bay region: A.D. 1600–2012
David P. Schwartz, James J. Lienkaemper, Suzanne Hecker, Keith I. Kelson, Thomas E. Fumal, John N. Baldwin, Gordon G. Seitz, Tina Niemi
2014, Bulletin of the Seismological Society of America
Stress changes produced by the 1906 San Francisco earthquake had a profound effect on the seismicity of the San Francisco Bay region (SFBR), dramatically reducing it in the twentieth century. Whether the SFBR is still within or has emerged from this seismic quiescence is an issue of debate with implications...
An integrated approach to the Taxonomic identification of prehistoric shell ornaments
Beatrice Demarchi, Sonia O’Connor, Andre de Lima Ponzoni, Raquel de Almeida Roch Ponzoni, Alison Sheridan, Kirsty Penkman, Y. Hancock, Julie Wilson
2014, PLoS ONE (9)
Shell beads appear to have been one of the earliest examples of personal adornments. Marine shells identified far from the shore evidence long-distance transport and imply networks of exchange and negotiation. However, worked beads lose taxonomic clues to identification, and this may be compounded by taphonomic alteration. Consequently, the significance...
Atrazine reduces reproduction in Japanese medaka (Oryzias latipes)
Diana M. Papoulias, Donald E. Tillitt, Melaniya G. Talykina, Jeffrey J. Whyte, Catherine A. Richter
2014, Aquatic Toxicology (154) 230-239
Atrazine is an effective broadleaf herbicide and the second most heavily used herbicide in the United States. Effects along the hypothalamus–pituitary–gonad axis in a number of vertebrate taxa have been demonstrated. Seasonally elevated concentrations of atrazine in surface waters may adversely affect fishes, but only a few studies have examined...
Dissolved-solids sources, loads, yields, and concentrations in streams of the conterminous United States
David W. Anning, Marilyn E. Flynn
2014, Scientific Investigations Report 2014-5012
Recent studies have shown that excessive dissolved-solids concentrations in water can have adverse effects on the environment and on agricultural, domestic, municipal, and industrial water users. Such effects motivated the U.S. Geological Survey’s National Water Quality Assessment Program to develop a SPAtially-Referenced Regression on Watershed Attributes (SPARROW) model that has...
Focused campaign increases activity among participants in Nature's Notebook, a citizen science project
Theresa Crimmins, Jake F. Weltzin, Alyssa H. Rosemartin, Echo M. Surina, Lee Marsh, Ellen G. Denny
2014, Natural Sciences Education (43) 64-72
Citizen science projects, which engage non-professional scientists in one or more stages of scientific research, have been gaining popularity; yet maintaining participants’ activity level over time remains a challenge. The objective of this study was to evaluate the potential for a short-term, focused campaign to increase participant activity in a...
Evidence against a Pleistocene desert refugium in the Lower Colorado River Basin
Camille A. Holmgren, Julio L. Betancourt, M. Cristina Penalba, Jose Delgadillo, Kristin Zuravnsky, Kimberly L. Hunter, Kate A. Rylander, Jeremy L. Weiss
2014, Journal of Biogeography (41) 1769-1780
Aim The absence of Sonoran Desert plants in late Pleistocene-aged packrat middens has led to speculation that they survived glacial episodes either in refugia as intact associations (Clementsian community concept) or in dry microsites within chaparral or woodland according to individualistic species responses (Gleasonian community concept). To test these...
Strategies for preventing invasive plant outbreaks after prescribed fire in ponderosa pine forest
Amy J. Symstad, Wesley E. Newton, Daniel J. Swanson
2014, Forest Ecology and Management (324) 81-88
Land managers use prescribed fire to return a vital process to fire-adapted ecosystems, restore forest structure from a state altered by long-term fire suppression, and reduce wildfire intensity. However, fire often produces favorable conditions for invasive plant species, particularly if it is intense enough to reveal bare mineral soil and...
Multiseason occupancy models for correlated replicate surveys
James E. Hines, James D. Nichols, Jaime Collazo
2014, Methods in Ecology and Evolution (5) 583-591
Occupancy surveys collecting data from adjacent (sometimes correlated) spatial replicates have become relatively popular for logistical reasons. Hines et al. (2010) presented one approach to modelling such data for single-season occupancy surveys. Here, we present a multiseason analogue of this...
Reducing fatigue damage for ships in transit through structured decision making
J.M. Nichols, P.L. Fackler, K. Pacifici, K.D. Murphy, J.D. Nichols
2014, Marine Structures (38) 18-43
Research in structural monitoring has focused primarily on drawing inference about the health of a structure from the structure’s response to ambient or applied excitation. Knowledge of the current state can then be used to predict structural integrity at a future time and, in principle, allows one to take action...
Modeling Hawaiian ecosystem degradation due to invasive plants under current and future climates
Adam E. Vorsino, Lucas B. Fortini, Fred A. Amidon, Stephen E. Miller, James D. Jacobi, Jonathan P. Price, Sam `Ohukani`ohi`a Gon III, Gregory A. Koob
2014, PLoS ONE (9)
Occupation of native ecosystems by invasive plant species alters their structure and/or function. In Hawaii, a subset of introduced plants is regarded as extremely harmful due to competitive ability, ecosystem modification, and biogeochemical habitat degradation. By controlling this subset of highly invasive ecosystem modifiers, conservation managers could significantly reduce native...
Use of genetic data to infer population-specific ecological and phenotypic traits from mixed aggregations
Paul Moran, Jeffrey F. Bromaghin, Michele Masuda
2014, PLoS ONE (9)
Many applications in ecological genetics involve sampling individuals from a mixture of multiple biological populations and subsequently associating those individuals with the populations from which they arose. Analytical methods that assign individuals to their putative population of origin have utility in both basic and applied research, providing information about population-specific...
Hierarchical spatial genetic structure in a distinct population segment of greater sage-grouse
Sara J. Oyler-McCance, Michael L. Casazza, Jennifer A. Fike, Peter S. Coates
2014, Conservation Genetics (15) 1299-1311
Greater sage-grouse (Centrocercus urophasianus) within the Bi-State Management Zone (area along the border between Nevada and California) are geographically isolated on the southwestern edge of the species’ range. Previous research demonstrated that this population is genetically unique, with a high proportion of unique mitochondrial DNA (mtDNA) haplotypes and with significant...
Comparative bioenergetics modeling of two Lake Trout morphotypes
Megan V. Kepler, Tyler Wagner, John A. Sweka
2014, Transactions of the American Fisheries Society (143) 1592-1604
Efforts to restore Lake Trout Salvelinus namaycush in the Laurentian Great Lakes have been hampered for decades by several factors, including overfishing and invasive species (e.g., parasitism by Sea Lampreys Petromyzon marinus and reproductive deficiencies associated with consumption of Alewives Alosa pseudoharengus). Restoration efforts are complicated by the presence of multiple body forms (i.e., morphotypes)...
Fifteen-year patterns of soil carbon and nitrogen following biomass harvesting
Valerie J. Kurth, Anthony W. D’Amato, Brian J. Palik, John B. Bradford
2014, Soil Science Society of America Journal (78) 624-633
The substitution of forest-derived woody biofuels for fossil fuel energy has garnered increasing attention in recent years, but information regarding the mid- and long-term effects on soil productivity is limited. We investigated 15-yr temporal trends in forest floor and mineral soil (0–30 cm) C and N pools in response to...
Estimating sample size for landscape-scale mark-recapture studies of North American migratory tree bats
Laura E. Ellison, Paul M. Lukacs
2014, Acta Chiropterologica (16) 231-239
Concern for migratory tree-roosting bats in North America has grown because of possible population declines from wind energy development. This concern has driven interest in estimating population-level changes. Mark-recapture methodology is one possible analytical framework for assessing bat population changes, but sample size requirements to produce reliable estimates have not...
Benzo[b]naphthothiophenes and alkyl dibenzothiophenes: molecular tracers for oil migration distances
Meijun Li, T.-G. Wang, Shengbao Shi, Keyu Liu, Geoffrey S. Ellis
2014, Marine and Petroleum Geology (57) 403-417
The secondary migration of petroleum is one of the most critical geological processes responsible for the accumulation of hydrocarbons in a sedimentary basin. Pyrrolic nitrogen compounds such as carbazoles and benzocarbazoles are thought to be practical molecular indicators for estimating relative migration distances of oil. In light oils or condensates,...
Transformation products and human metabolites of triclocarban and tricllosan in sewage sludge across the United States
Benny F.G. Pycke, Isaac B. Roll, Bruce J. Brownawell, Chad A. Kinney, Edward T. Furlong, Dana W. Kolpin, Rolf U. Halden
2014, Environmental Science & Technology (48) 7881-7890
Removal of triclocarban (TCC) and triclosan (TCS) from wastewater is a function of adsorption, abiotic degradation, and microbial mineralization or transformation, reactions that are not currently controlled or optimized in the pollution control infrastructure of standard wastewater treatment. Here, we report on the levels of eight transformation products, human metabolites,...
Fish biodiversity sampling in stream ecosystems: a process for evaluating the appropriate types and amount of gear
Joseph M. Smith, Sarah P. Wells, Martha E. Mather, Robert M. Muth
2014, Aquatic Conservation: Marine and Freshwater Ecosystems (24) 338-350
Because human impacts and climate change threaten aquatic ecosystems, a need exists to quantify catchment-scale biodiversity patterns and identify conservation actions that can mitigate adverse human impacts on aquatic biota. Whereas many traditional aquatic resource questions can be answered by repeatedly sampling a few target species with...