Impact of thiamine deficiency on T-cell dependent and T-cell independent antibody production in lake trout
Christopher A. Ottinger, Dale C. Honeyfield, Christine L. Densmore, Luke R. Iwanowicz
2012, Journal of Aquatic Animal Health (24) 258-273
Lake trout Salvelinus namaycush on thiamine-replete and thiamine-depleted diets were evaluated for the effects of thiamine status on in vivo responses to the T-dependent antigen trinitophenol (TNP)-keyhole limpet hemocyanin (TNP-KLH), the T-independent antigen trinitrophenol-lipolysaccaharide (TNP-LPS), or Dulbecco's phosphate-buffered saline (DPBS; negative control fish). Plasma antibody concentrations were evaluated for possible...
Development of polysomic microsatellite markers for characterization of population structuring and phylogeography in the shortnose sturgeon (Acipenser brevirostrum)
Anne P. Henderson, Tim L. King
2012, Conservation Genetics Resources (4) 853-859
Shortnose sturgeon Acipenser brevirostrum is an endangered polyploid fish species for which no nuclear DNA markers previously existed. To address this need, 86 polysomic loci were developed and characterized in 20 A. brevirostrum from five river systems and eight members (parents and six progeny) of a captive-bred family. All markers...
Habitat use and movement patterns of Northern Pintails during spring in northern Japan: the importance of agricultural lands
Noriyuki M. Yamaguchi, Jerry W. Hupp, Paul L. Flint, John M. Pearce, Yusuke Shigeta, Tetsuo Shimada, Emiko N. Hiraoka, Hiroyoshi Higuchi
2012, Journal of Field Ornithology (83) 141-153
From 2006 to 2009, we marked 198 Northern Pintails (Anas acuta) with satellite transmitters on their wintering areas in Japan to study their migration routes and habitat use in spring staging areas. We hypothesized that the distribution of pintails during spring staging was influenced by patterns of land use and...
Physical controls and predictability of stream hyporheic flow evaluated with a multiscale model
Susa H. Stonedahl, Judson W. Harvey, Joel Detty, Antoine Aubeneau, Aaron I. Packman
2012, Water Resources Research (48)
Improved predictions of hyporheic exchange based on easily measured physical variables are needed to improve assessment of solute transport and reaction processes in watersheds. Here we compare physically based model predictions for an Indiana stream with stream tracer results interpreted using the Transient Storage Model (TSM). We parameterized the physically...
A national geographic framework for guiding conservation on a landscape scale
Michael J. Millard, Craig A. Czarnecki, John M. Morton, Laura A. Brandt, Jennifer S. Briggs, Frank S. Shipley, Roger G. Sayre, Pamela J. Sponholtz, David Perkins, Darin G. Simpkins, Janith Taylor
2012, Journal of Fish and Wildlife Management (3) 175-183
The U.S. Fish and Wildlife Service, along with the global conservation community, has recognized that the conservation challenges of the 21st century far exceed the responsibilities and footprint of any individual agency or program. The ecological effects of climate change and other anthropogenic stressors do not recognize geopolitical boundaries and,...
Farallon slab detachment and deformation of the Magdalena Shelf, southern Baja California
Daniel S. Brothers, Alistair J. Harding, Antonio Gonzalez-Fernandez, W.S. Steven Holbrook, Graham M. Kent, Neal W. Driscoll, John M. Fletcher, Daniel Lizarralde, Paul J. Umhoefer, Gary Axen
2012, Geophysical Research Letters (39)
Subduction of the Farallon plate beneath northwestern Mexico stalled by ~12 Ma when the Pacific-Farallon spreading-ridge approached the subduction zone. Coupling between remnant slab and the overriding North American plate played an important role in the capture of the Baja California (BC) microplate by the Pacific Plate. Active-source seismic reflection...
Extraordinary distance limits of landslides triggered by the 2011 Mineral, Virginia, earthquake
Randall W. Jibson, Edwin L. Harp
2012, Bulletin of the Seismological Society of America (102) 2368-2377
The 23 August 2011 Mineral, Virginia, earthquake (Mw 5.8) was the largest to strike the eastern U.S. since 1897 and was felt over an extraordinarily large area. Although no large landslides occurred, the shaking did trigger many rock and soil falls from steep river banks and natural cliffs in the...
Calcareous nannofossil assemblage changes across the Paleocene-Eocene thermal maximum: Evidence from a shelf setting
Jean M. Self-Trail, David S. Powars, David K. Watkins, Gregory A. Wandless
2012, Marine Micropaleontology (92-93) 61-80
Biotic response of calcareous nannoplankton to abrupt warming across the Paleocene/Eocene boundary reflects a primary response to climatically induced parameters including increased continental runoff of freshwater, global acidification of seawater, high sedimentation rates, and calcareous nannoplankton assemblage turnover. We identify ecophenotypic nannofossil species adapted to low pH conditions (Discoaster anartios,...
A Gibbs sampler for Bayesian analysis of site-occupancy data
Robert M. Dorazio, Daniel Taylor Rodriguez
2012, Methods in Ecology and Evolution (3) 1093-1098
1. A Bayesian analysis of site-occupancy data containing covariates of species occurrence and species detection probabilities is usually completed using Markov chain Monte Carlo methods in conjunction with software programs that can implement those methods for any statistical model, not just site-occupancy models. Although these software programs are quite flexible, considerable...
Carbon dioxide stripping in aquaculture. part 1: terminology and reporting
John Colt, Barnaby Watten, Tim Pfeiffer
2012, Aquacultural Engineering (47) 27-37
The removal of carbon dioxide gas in aquacultural systems is much more complex than for oxygen or nitrogen gas because of liquid reactions of carbon dioxide and their kinetics. Almost all published carbon dioxide removal information for aquaculture is based on the apparent removal value after the CO2(aq) + HOH...
Nuclear and mitochondrial markers reveal evidence for genetically segregated cryptic speciation in giant Pacific octopuses from Prince William Sound, Alaska
Rebecca K. Toussaint, David Scheel, G. Kevin Sage, Sandra L. Talbot
2012, Conservation Genetics (13) 1483-1497
Multiple species of large octopus are known from the north Pacific waters around Japan, however only one large species is known in the Gulf of Alaska (the giant Pacific octopus, Enteroctopus dofleini). Current taxonomy of E. dofleini is based on geographic and morphological characteristics, although with advances in genetic technology...
Development of a quantitative assay to measure expression of transforming growth factor ß (TGF-ß) in Lost River sucker (Deltistes luxatus) and shortnose sucker (Chasmistes brevirostris) and evaluation of potential pitfalls in use with field-collected samples
Laura S. Robertson, Christopher A. Ottinger, Summer M. Burdick, Scott P. VanderKooi
2012, Fish and Shellfish Immunology (32) 890-898
The Nature Conservancy is in the process of restoring the Williamson River Delta in an attempt to recreate important juvenile habitat for the endangered shortnose sucker Chasmistes brevirostris and the endangered Lost River sucker Deltistes luxatus. Measurement of TGF-β mRNA expression level was one of the indicators chosen to evaluate...
Dinocyst taphonomy, impact craters, cyst ghosts, and the Paleocene-Eocene thermal maximum (PETM)
Lucy E. Edwards
2012, Palynology (36) 80-95
Dinocysts recovered from sediments related to the Chesapeake Bay impact structure in Virginia and the earliest Eocene suboxic environment in Maryland show strange and intriguing details of preservation. Features such as curled processes, opaque debris, breakage, microborings and cyst ghosts, among others, invite speculation about catastrophic depositional processes, rapid burial...
Holocene behavior of the Brigham City segment: implications for forecasting the next large-magnitude earthquake on the Wasatch fault zone, Utah
Stephen F. Personius, Christopher B. DuRoss, Anthony J. Crone
2012, Bulletin of the Seismological Society of America (102) 2265-2281
The Brigham City segment (BCS), the northernmost Holocene‐active segment of the Wasatch fault zone (WFZ), is considered a likely location for the next big earthquake in northern Utah. We refine the timing of the last four surface‐rupturing (~Mw 7) earthquakes at several sites near Brigham City (BE1, 2430±250; BE2, 3490±180;...
Drainage network structure and hydrologic behavior of three lake-rich watersheds on the Arctic Coastal Plain, Alaska
C.D. Arp, M.S. Whitman, Benjamin M. Jones, R. Kemnitz, G. Grosse, F.E. Urban
2012, Arctic, Antarctic, and Alpine Research (44) 385-394
Watersheds draining the Arctic Coastal Plain (ACP) of Alaska are dominated by permafrost and snowmelt runoff that create abundant surface storage in the form of lakes, wetlands, and beaded streams. These surface water elements compose complex drainage networks that affect aquatic ecosystem connectivity and hydrologic behavior. The 4676 km2 Fish...
Hillslope hydrology and stability
Ning Lu, Jonathan Godt
2012, Book
Landslides are caused by a failure of the mechanical balance within hillslopes. This balance is governed by two coupled physical processes: hydrological or subsurface flow and stress. The stabilizing strength of hillslope materials depends on effective stress, which is diminished by rainfall. This book presents a cutting-edge quantitative approach to...
Demand surge following earthquakes
Anna H. Olsen
2012, Conference Paper, Proceedings of the 15th World Conference on Earthquake Engineering (15WCEE), Lisbon, Portugal, September 24-28
Demand surge is understood to be a socio-economic phenomenon where repair costs for the same damage are higher after large- versus small-scale natural disasters. It has reportedly increased monetary losses by 20 to 50%. In previous work, a model for the increased costs of reconstruction labor and materials was developed...
Antarctic and Southern Ocean influences on Late Pliocene global cooling
Robert McKay, Tim Naish, Lionel Carter, Christina Riesselman, Robert Dunbar, Charlotte Sjunneskog, Diane Winter, Francesca Sangiorgi, Courtney Warren, Mark Pagani, Stefan Schouten, Veronica Willmott, Richard Levy, Robert DeConto, Ross D. Powell
2012, PNAS (109) 6423-6428
The influence of Antarctica and the Southern Ocean on Late Pliocene global climate reconstructions has remained ambiguous due to a lack of well-dated Antarctic-proximal, paleoenvironmental records. Here we present ice sheet, sea-surface temperature, and sea ice reconstructions from the ANDRILL AND-1B sediment core recovered from beneath the Ross Ice Shelf....
Damping scaling of response spectra for shallow crustal earthquakes in active tectonic regions
S. Rezaeian, Y. Bozorgnia, I.M. Idriss, K. Campbell, N. Abrahamson, W. Silva
2012, Conference Paper, Proceedings of the 15th World Conference on Earthquake Engineering (15WCEE), Lisbon, Portugal, September 24-28
The GED4GEM project: development of a Global Exposure Database for the Global Earthquake Model initiative
P. Gamba, D. Cavalca, K. S. Jaiswal, C. Huyck, H. Crowley
2012, Conference Paper, The 15th World Conference on Earthquake Engineering: September 24-28, 2012, Lisbon, Portugal
In order to quantify earthquake risk of any selected region or a country of the world within the Global Earthquake Model (GEM) framework (www.globalquakemodel.org/), a systematic compilation of building inventory and population exposure is indispensable. Through the consortium of leading institutions and by engaging the domain-experts from multiple countries, the...
Elemental mapping by Dawn reveals exogenic H in Vesta's regolith
Thomas H. Prettyman, David W. Mittlefehldt, Naoyuki Yamashita, David J. Lawrence, Andrew W. Beck, William C. Feldman, Timothy J. McCoy, Harry Y. McSween, Michael J. Toplis, Timothy N. Titus, Pasquale Tricarico, Robert C. Reedy, John S. Hendricks, Olivier Forni, Lucille Le Corre, Jian-Yang Li, Hugau Mizzon, Vishnu Reddy, Carol A. Raymond, Christopher T. Russell
2012, Science (338) 242-246
Using Dawn’s Gamma Ray and Neutron Detector, we tested models of Vesta’s evolution based on studies of howardite, eucrite, and diogenite (HED) meteorites. Global Fe/O and Fe/Si ratios are consistent with HED compositions. Neutron measurements confirm that a thick, diogenitic lower crust is exposed in the Rheasilvia basin, which is...
Inter-laboratory calibration of natural gas round robins for δ2H and δ13C using off-line and on-line techniques
Jinxing Dai, Xinyu Xia, Zhisheng Li, Dennis D. Coleman, Robert F. Dias, Ling Gao, Jian Li, Andrei Deev, Jin Li, Daniel Dessort, Dominique Duclerc, Liwu Li, Jinzhong Liu, Stefan Schloemer, Wenlong Zhang, Yunyan Ni, Guoyi Hu, Xiaobo Wang, Yongchun Tang
2012, Chemical Geology (310-311) 49-55
Compound-specific carbon and hydrogen isotopic compositions of three natural gas round robins were calibrated by ten laboratories carrying out more than 800 measurements including both on-line and off-line methods. Two-point calibrations were performed with international measurement standards for hydrogen isotope ratios (VSMOW and SLAP) and carbon isotope ratios (NBS 19...
Resolving hyporheic and groundwater components of streambed water flux
Aditi S. Bhaskar, Judson W. Harvey, Eric J. Henry
2012, Water Resources Research (48)
Hyporheic and groundwater fluxes typically occur together in permeable sediments beneath flowing stream water. However, streambed water fluxes quantified using the thermal method are usually interpreted as representing either groundwater or hyporheic fluxes. Our purpose was to improve understanding of co-occurring groundwater and hyporheic fluxes using streambed temperature measurements and...
Kinetics of uncatalyzed thermochemical sulfate reduction by sulfur-free paraffin
Tongwei Zhang, Geoffrey S. Ellis, Qisheng Ma, Alon Amrani, Yongchun Tang
2012, Geochimica et Cosmochimica Acta (96) 1-17
To determine kinetic parameters of sulfate reduction by hydrocarbons (HC) without the initial presence of low valence sulfur, we carried out a series of isothermal gold-tube hydrous-pyrolysis experiments at 320, 340, and 360 °C under a constant confined pressure of 24.1 MPa. The reactants used consisted of saturated HC (sulfur-free)...
Data quality of seismic records from the Tohoku, Japan earthquake as recorded across the Albuquerque Seismological Laboratory networks
A. T. Ringler, L.S. Gee, B. Marshall, C. R. Hutt, T. Storm
2012, Seismological Research Letters (83) 575-584
Great earthquakes recorded across modern digital seismographic networks, such as the recent Tohoku, Japan, earthquake on 11 March 2011 (Mw = 9.0), provide unique datasets that ultimately lead to a better understanding of the Earth's structure (e.g., Pesicek et al. 2008) and earthquake sources (e.g., Ammon et al. 2011). For...