Progression of infection and detection of Pseudoloma neurophilia in zebrafish Danio rerio Hamilton by PCR and histology
Corbin J. Schuster, Taylor Kreul, Colleen E. Al-Samarrie, James T. Peterson, Justin L. Sanders, Michael L. Kent
2022, Journal of Fish Diseases (45) 1463-1475
Pseudoloma neurophilia is a critical threat to the zebrafish (Danio rerio) model, as it is the most common infectious agent found in research facilities. In this study, our objectives were two-fold: (1) compare the application of diagnostic tools for P. neurophilia and (2) track the progression of infection using PCR and histology. The...
Provenance of Devonian-Carboniferous strata of Colorado: The influence of the Cambrian and the Proterozoic
Christopher S. Holm-Denoma, William A. Matthews, Linda Soar, Mark W. Longman, James W. Hagadorn
2022, Rocky Mountain Geology (57) 1-21
We report new LA-ICPMS U-Pb detrital zircon ages and sedimentary petrology of silty to sandy limestones and dolostones, as well as calcareous to dolomitic sandstones of the Devonian-Carboniferous (Mississippian) Chaffee Group, as well as detrital zircon ages from the Late Cambrian Sawatch Quartzite and a U-Pb zircon crystallization age on...
Integrating monitoring and optimization modeling to inform flow decisions for Chinook salmon smolts
Patti J. Wohner, Adam Duarte, John Wikert, Brad Cavallo, Steven C. Zeug, James T. Peterson
2022, Ecological Modelling (471)
Monitoring is usually among the first actions taken to help inform recovery planning for declining species, but these data are rarely used formally to inform conservation decision making. For example, Central Valley Chinook salmon were once abundant, but anthropogenic activities have led to widespread habitat loss and degradation resulting in...
Wading bird foraging on a wetland landscape: A comparison of two strategies
Hyo Won Lee, Donald L. DeAngelis, Simeon Yurek, Stephen Tennenbaum
2022, Mathematical Biosciences and Engineering (19) 7687-7718
Tactile-feeding wading birds, such as wood storks and white ibises, require high densities of prey such as small fishes and crayfish to support themselves and their offspring during the breeding season. Prey availability in wetlands is often determined by seasonal hydrologic pulsing, such as in the subtropical Everglades, where spatial...
Satellite remote sensing of crop water use across the Missouri River Basin for 1986–2018 period
Arun Bawa, Gabriel B. Senay, Sandeep Kumar
2022, Agricultural Water Management (271)
Understanding historical crop water use (CWU) dynamics is important to improve land and water management. In this study, well-validated (coefficient of determination = 0.91, percent bias = 4%, and percent root mean square error = 11.8%) Landsat-based actual evapotranspiration (ETa) time-series estimations were used...
Informing surveillance through the characterization of outbreak potential of chronic wasting disease in white-tailed deer
Brenda J. Hanley, Michelle Carstensen, Daniel P. Walsh, Sonja A. Christensen, Daniel J. Storm, James G. Boothe, Joseph Guinness, Cara E. Them, Md Sohel Ahmed, Krysten L. Schuler
2022, Ecological Modelling (471)
Understanding the role that an environmental prion reservoir plays in the outbreak dynamics of chronic wasting disease (CWD) in free ranging white-tailed deer (Odocoileus virginianus) is critical for the allocation of disease surveillance resources by state and provincial...
Characterization of the partial oxidation products of crude oil contaminating groundwater at the U.S. Geological Survey Bemidji research site in Minnesota by elemental analysis, radiocarbon dating, nuclear magnetic resonance spectroscopy, and Fourier transform ion cyclotron resonance mass spectrometry
Kevin A. Thorn, Ananna Islam, Sunghwan Kim
2022, Open-File Report 2022-1042
In oil spill research, a topic of increasing attention during the last decade has been the environmental impact of the partial oxidation products that result from transformation of the petroleum in freshwater, marine, and terrestrial ecosystems. This report describes the isolation and characterization of the partial oxidation products from crude...
Characterizing storm-induced coastal change hazards along the United States West Coast
James B. Shope, Li H. Erikson, Patrick L. Barnard, Curt D. Storlazzi, Katherine A. Serafin, Kara S. Doran, Hilary F. Stockdon, Borja G. Reguero, Fernando J. Mendez, Sonia Castanedo, Alba Cid, Laura Cagigal, Peter Ruggiero
2022, Nature--Scientific Data (9)
Traditional methods to assess the probability of storm-induced erosion and flooding from extreme water levels have limited use along the U.S. West Coast where swell dominates erosion and storm surge is limited. This effort presents methodology to assess the probability of erosion and flooding for the U.S. West Coast from...
Response study of a tall San Diego, California building inferred from the M7.1 July 5, 2019 Ridgecrest, California earthquake motions
Mehmet Celebi, Daniel Swensen
2022, The Open Construction & Building Technology Journal (16)
The shaking of a new 24-story tall building in San Diego, California, was recorded by its seismic monitoring array during the M7.1 Ridgecrest, California earthquake of July 5, 2019. The building is located ~340 km from the epicenter of the event. The building is a special moment framed (SMF) steel...
Diverse aging rates in ectothermic tetrapods provide insights for the evolution of aging and longevity
Beth A. Reinke, Hugo Cayuela, Fredric J. Janzen, Jean-François Lemaitre, Jean-Michel Gaillard, A. Michelle Lawing, John B. Iverson, Ditte G Christiansen, Iñigo Martínez-Solano, Gregorio Sánchez-Montes, Jorge S. Gutiérrez, Francis L Rose, Nicola J. Nelson, Susan Keall, Alain J Crivelli, Theodoros Nazirides, Annegret Grimm-Seyfarth, Klaus Henle, Emiliano Mori, Gaetan Guiller, Rebecca Homan, Anthony Olivier, Erin L. Muths, Blake R. Hossack, Xavier Bonnet, David S. Pilliod, Marieke Lettink, Tony Whitaker, Benedikt R. Schmidt, Michael G. Gardner, Marc Cheylan, Francoise Poitevin, Ana Golubovic, Ljiljana Tomovic, Dragan Arsovski, Richard A Griffiths, Jan W. Arntzen, Jean-Pierre Baron, Jean-Francois Le Galliard, Thomas Tully, Luca Luiselli, Massimo Capula, Lorenzo Rugiero, Rebecca M. McCaffery, Lisa A Eby, Briggs-Gonzalez; Venetia, Frank Mazzotti, David M. Pearson, Brad A. Lambert, David M. Green, Nathalie Jreidini, Claudio Angelini, Graham Pyke, Jean-Marc Thirion, Pierre Joly, Jean-Paul Lena, Tony Tucker, Limpus, Pauline Priol, Aurelien Besnard, Pauline Bernard, Kristin Stanford, Richard S. King, Justin M Garwood, Jaime Bosch, Franco Souza, Jaime Bertoluci, Shirley Famelli, Kurt Grossenbacher, Omar Lenzi, Kathleen Matthews, Sylvain Boitaud, Deanna H. Olson, Tim Jessop, Graeme Gillspie, Jean Clobert, Murielle Richard, Andrés Valenzuela-Sánchez, Gary M. Fellers, Patrick M. Kleeman, Brian J. Halstead, Evan H. Campbell Grant, Phillip G Byrne, Thierry Fretey, Gernard Le Garff, Pauline Levionnois, John C. Maerz, Julian Pichenot, Kurtulus Olgun, Nazan Uzum, Aziz Avci, Claude Miaud, Johan Elmberg, Gregory P Brown, Richard Shine, Nathan F Bendik, Lisa O’Donnell, Courtney L. Davis, Michael J Lannoo, Rochelle M Stiles, Robert M Cox, Aaron M Reedy, Daniel A. Warner, Eric Bonnaire, Kristine Grayson, Roberto Ramos-Targarona, Eyup Baskale, David J. Munoz, John Measey, F. Andre de Villiers, Will Selman, Victor Ronget, Anne M. Bronikowski, David A W Miller
2022, Science (376) 1459-1466
Comparative studies of mortality in the wild are necessary to understand the evolution of aging; yet, ectothermic tetrapods are underrepresented in this comparative landscape, despite their suitability for testing evolutionary hypotheses. We present a study of aging rates and longevity across wild tetrapod ectotherms, using data from 107 populations (77...
Characterizing mauka-to-makai connections for aquatic ecosystem conservation on Maui, Hawaiʻi
Ella Wilmot, Jesse P. Wong, Yinphan Tsang, Abigail J. Lynch, Dana M. Infante, Kirsten L. L. Oleson, Ayron Strauch, Hannah Clilverd
2022, Ecological Informatics (70)
Mauka-to-makai (mountain to sea in the Hawaiian language) hydrologic connectivity – commonly referred to as ridge-to-reef – directly affects biogeochemical processes and socioecological functions across terrestrial, freshwater, and marine systems. The supply of freshwater to estuarine and nearshore environments in a ridge-to-reef system supports the food,...
Ecological status and trends of the Upper Mississippi and Illinois Rivers
Jeffrey N. Houser, editor(s)
2022, Open-File Report 2022-1039
Executive SummaryThis report assesses the status and trends of selected ecological health indicators of the Upper Mississippi River System (UMRS) based on the data collected and analyzed by the Long Term Resource Monitoring element of the Upper Mississippi River Restoration program, supplemented with data from other sources. This report has...
River bathymetry retrieval from Landsat-9 images based on neural networks and comparison to SuperDove and Sentinel-2
Milad Niroumand-Jadidi, Carl J. Legleiter, Francesca Bovolo
2022, Journal of Selected Topics in Applied Earth Observation and Remote Sensing (15) 5250-5260
The Landsat mission has kept an eye on our planet, including water bodies, for 50 years. With the launch of Landsat-9 and its onboard Operational Land Imager 2 (OLI-2) in September 2021, more subtle variations in brightness (14-bit dynamic range) can be captured than previous sensors...
Projected resurgence of COVID-19 in the United States in July—December 2021 resulting from the increased transmissibility of the Delta variant and faltering vaccination
Shaun Truelove, Claire P. Smith, Michelle Qin, Luke Mullany, Rebecca K. Borchering, Justin Lessler, Katriona Shea, Emily Howerton, Lucie Contamin, John Levander, J. Kerr, Harry Hochheiser, Matt Kinsey, Kate Tallaksen, Shelby Wilson, Lauren Shin, Kaitlin Rainwater-Lovett, Joseph Lemaitre, Juan Dent, Joshua Kaminsky, Elizabeth C. Lee, Javier Perez-Saez, Alison Hill, Dean Karlen, Matteo Chinazzi, Jessica Davis, Kunpeng Mu, Xinyue Xiong, Ana Pastore y Piontti, Alessandro Vespignani, Ajitesh Srivastava, Przemyslaw Porebski, Srinivasan Venkatramanan, Aniruddha Adiga, Bryan Lewis, Brian Klahn, Joseph Outten, M. Orr, G. Harrison, Benjamin Hurt, Jiangzhuo Chen, Anil Vullikanti, Madhav Marathe, Stefan Hoops, Parantapa Bhattacharya, Dustin Machi, Shi Chen, Rajib Paul, Daniel Janies, Jean-Claude Thill, Marta Galanti, Teresa Yamana, Sen Pei, Jeffrey L. Shaman, Jessica Healy, Rachel B. Slayton, Matthew Biggerstaff, Michael A Johansson, Michael C. Runge, Cecile Viboud
2022, eLife (11)
In Spring 2021, the highly transmissible SARS-CoV-2 Delta variant began to cause increases in cases, hospitalizations, and deaths in parts of the United States. At the time, with slowed vaccination uptake, this novel variant was expected to increase the risk of pandemic resurgence in the US in summer and fall...
Predictive models of phosphorus concentration and load in stormwater runoff from small urban residential watersheds in fall season
Yi Wang, Anita Thompson, William R. Selbig
2022, Journal of Environmental Management (315)
Urban street trees are a key part of public green infrastructure in many cities, however, leaf litter on streets is a critical biogenic source of phosphorus (P) in urban stormwater runoff during Fall. This study identified mass of street leaf litter (Mleaf) and antecedent dry days (ADD) as the top two explanatory parameters...
Demonstration of a novel quantitative microscopy technique for automated characterization of in situ particulate matter in coal miners with progressive massive fibrosis
Jeremy T. Hua, Lauren M. Zell-Baran, L. H. Go, Carlyne D. Cool, Heather A. Lowers, K. S. Almberg, Emily A. Sarver, Susan M. Majka, Kathy D. Pang, R. A. Cohen, Cecil S. Rose
2022, Conference Paper, American Thoracic Society 2022 proceedings
Rationale: Increasing exposure to respirable crystalline silica (RCS) linked to changes in mining production processes has been implicated in the resurgence of severe lung disease in U.S. coal miners. Lung mineralogy can provide insight into particle pathogenesis. However, standard approaches to characterizing in situ particulate matter (PM) by pulmonary pathologists...
Geoenvironmental model for roll-type uranium deposits in the Texas Gulf Coast
Katherine Walton-Day, Johanna Blake, Robert R. Seal, II, Tanya J. Gallegos, Jean Dupree, Kent D Becher
2022, Minerals (12)
Geoenvironmental models were formulated by the U.S. Geological Survey in the 1990s to describe potential environmental effects of extracting different types of ore deposits in different geologic and climatic regions. This paper presents a geoenvironmental model for roll-front (roll-type) uranium deposits in the Texas Coastal Plain. The model reviews...
Assessing runoff and erosion on woodland-encroached sagebrush steppe using the Rangeland Hydrology and Erosion Model
C. Jason Williams, Frederick B. Pierson, Osama Z. Al-Hamdan, S. Kossi Nouwakpo, Justin C. Johnson, Viktor O. Polyakov, Patrick R. Kormos, Scott Shaff, Kenneth E. Spaeth
2022, Ecosphere (13)
The transition of sagebrush-dominated (Artemisia spp.) shrublands to pinyon (Pinus spp.) and juniper (Juniperus spp.) woodlands markedly alters resource-conserving vegetation structure typical of these landscapes. Land managers and scientists in the western United States need knowledge and predictive tools for assessment and effective targeting of tree-removal treatments to conserve or restore sagebrush vegetation...
What is a biocrust? A refined, contemporary definition for a broadening research community
Bettina Weber, Jayne Belnap, Burkhard Budel, Anita J. Antoninka, Nichole N. Barger, V Bala Chaudhary, Anthony Darrouzet-Nardi, David J. Eldridge, Akasha M. Faist, Scott Ferrenberg, Caroline Havrilla, Elisabeth Huber-Sannwald, Oumarou Malam Issa, Fernando T. Maestre, Sasha C. Reed, Emilio Rodriguez-Caballero, Colin L Tucker, Kristina E. Young, Yuanming Zhang, Yunge Zhao, Xiaobing Zhou, Matthew A. Bowker
2022, Biological Reviews (97) 1768-1785
Studies of biological soil crusts (biocrusts) have proliferated over the last few decades. The biocrust literature has broadened, with more studies assessing and describing the function of a variety of biocrust communities in a broad range of biomes and habitats and across a large spectrum of disciplines, and also by...
Cryptic population decrease due to invasive species predation in a long-lived seabird supports need for eradication
Steffen Oppel, Bethany L. Clark, Michelle M. Risi, Catharine Horswill, Sarah J. Converse, Christopher W. Jones, Alexis M. Osborne, Kim Stevens, Vonica Perold, Alexander L. Bond, Ross M. Wanless, Richard Cuthbert, John Cooper, Peter G. Ryan
2022, Journal of Applied Ecology (59) 2059-2070
Invasive species are one of the greatest drivers of biodiversity loss worldwide, and the eradication of invasive species from islands is a highly efficient management strategy. Because eradication operations require large financial investments, uncertainty over the magnitude of impacts of both invasive species and their removal can impede the...
Maturation study of vitrinite in carbonaceous shales and coals: Insights from hydrous pyrolysis
Divya K. Mishra, Paul C. Hackley, Aaron M. Jubb, Margaret M. Sanders, Shailesh Agrawal, Atul K. Varma
2022, International Journal of Coal Geology (259)
The presence of vitrinite in sedimentary rocks of post-Silurian age allows its reflectance to be used to estimate the thermal maturation of organic matter in petroleum systems. Increasing reflectance of vitrinite, which is primarily driven by aromaticity, depends primarily on the time and temperature attributes of its evolutionary pathway. This...
Reproductive indices and observations of mass ovarian follicular atresia in hatchery-origin pallid sturgeon
Tanner L. Cox, Christopher S. Guy, Luke M. Holmquist, Molly A. H. Webb
2022, Journal of Applied Ichthyology (38) 391-402
The Pallid Sturgeon (Scaphirhynchus albus) Conservation Propagation and Stocking Program began stocking in the Missouri River above Fort Peck Reservoir in 1998 with 1997-year-class pallid sturgeon. Within the 1997-year class, all hatchery-origin pallid sturgeon females that reached reproductive maturation by 2016 underwent mass ovarian follicular atresia. Using combined historical and...
Application of a soil-water-balance model to estimate annual groundwater recharge for Long Island, New York, 1900–2019
Jason S. Finkelstein, Jack Monti Jr., John P. Masterson, Donald A. Walter
2022, Scientific Investigations Report 2021-5143
A soil-water-balance (SWB) model was developed for Long Island, New York, to estimate the potential amount of annual groundwater recharge to the Long Island aquifer system from 1900 to 2019. The SWB model program is a computer code based on a modified Thornthwaite-Mather SWB approach and uses spatially and temporally...
Data-driven modeling of wind waves in upper Delaware Bay with living shorelines
Nan Wang, Q. Chen, Ling Zhu, Hongqing Wang
2022, Ocean Engineering (257)
Living shoreline projects have been built to preserve coastal ecosystems under future climate change and sea level rise. To quantify the wave power variation across living shorelines, the wave characteristics around the constructed oyster reefs (CORs) in upper Delaware Bay were investigated in this study. Wave parameters seaward and shoreward...
Assessing wave attenuation with rising sea levels for sustainable oyster reef-based living shorelines
Reza Salatin, Hongqing Wang, Q. Chen, Ling Zhu
2022, Frontiers in Built Environment (8)
In densely populated coastal areas with sea-level rise (SLR), protecting the shorelines against erosion due to the wave impact is crucial. Along with many engineered structures like seawalls and breakwaters, there are also green structures like constructed oyster reefs (CORs) that can not only attenuate the incident waves...
