Simple bagged movement models for telemetry data
Andrew B. Whetten, Trevor J. Hefley, David A. Haukos, Dustin E. Brewer
2025, Ecology and Evolution (15)
Determining which statistical methods are appropriate for data is both user and data dependent and prone to change as new methodology becomes available. This process encompasses model ideation, model selection, and determining appropriate use of statistical methods. Literature on models for animal movement emerging in the past two decades has...
Chinook salmon Oncorhynchus tshawytscha (Walbaum, 1792) life history influences how diagnostic cranial structures relate to fish length
Jeremy D. Romer, Kevin A. Stertz, Keiara Pham, Christina Amy Murphy
2025, Journal of Fish Biology
Diagnostic bones can aid in identification and size determination of fishes from ingested prey, archaeological remains or damaged specimens. We extracted diagnostic structures, including cleithra, dentaries, opercles and otoliths, from juvenile spring Chinook salmon (Oncorhynchus tshawytscha) from three distinct groups: hatchery, naturally produced and surrogate, representing shared genetics. Although our...
Evaluation of polymer-based dust palliatives in soil and stormwater runoff in an arid environment
Angela Paul, Erin L. Orozco-Whitaker, S. Shamsuddin, Peng Xiang, Eric Landry
2025, Archives of Environmental Contamination and Toxicology (89) 239-251
Dust palliatives are used to reduce fugitive dust in areas susceptible to erosion by wind and rain. In 2015, the Bureau of Land Management (BLM) temporarily approved the use of polymer-based dust palliatives during the construction and operation of a solar energy facility and, in 2019, on a mining access...
Seasonal variation in bay-marsh sediment exchange through a back-barrier salt marsh tidal creek
G.A. Snedden, S. Jarrell Smith
2025, Limnology and Oceanography (70) 3143-3154
Salt marsh resilience to sea-level rise largely depends on the balance of sediment exchanges with surrounding bays. In this study, we investigate mechanisms that determine residual sediment fluxes using continuous measurements of bay-marsh sediment exchange conducted in a tidal creek spanning 13 months (753 tidal cycles) in an intertidal marsh recently...
Mitigating flood risks in urban estuaries: Tidal dynamics, shoreline hardening, nature-based solutions, and floodgates in San Francisco Bay
Kees Nederhoff, Rohin Saleh, Patrick L. Barnard, Mark T. Stacey
2025, Journal of Waterway, Port, Coastal, and Ocean Engineering (151)
Hydrodynamic models are valuable tools for understanding the primary factors influencing daily and peak water levels and for guiding discussions on potential adaptation strategies for managing flood risk in coastal areas. This analysis uses the Delft3D San Francisco Bay-Delta Community Model to simulate water levels and incorporates the effects of...
Invasive predatory fish occupies highest trophic position leading to expansion of isotopic niches in a riverine food web
Olivia C. Hodgson, Sydney Stark, Megan K. Schall, Geoffrey D. Smith, Kelly Smalling, Tyler Wagner
2025, Ecology (106)
Invasive species are drivers of ecological change with the potential to reshape the structure and function of terrestrial and aquatic ecosystems. The invasive flathead catfish (Pylodictis olivaris) is an opportunistic predator that has established a rapidly growing population in the Susquehanna River, Pennsylvania, USA, since they were...
Framework developed for geomorphic mapping of Fern Ridge Lake, Oregon, 2023
Mackenzie K. Keith, Heather D. Bervid
2025, Data Report 1215
The construction and operation of large reservoirs in the Willamette River Basin, Oregon, influences important cultural, biological, and other natural or economic resources in affected river corridors. The present-day landforms and cover within the reservoirs have been shaped by a variety of processes, including the pre-dam valley setting and geomorphic...
Placing environmental DNA monitoring for new detections into perspective: Fishes in the Milwaukee River, Wisconsin
Richard A. Erickson, Patrick W. DeHaan, Nicholas K. Frohnauer, Cari-Ann Hayer, Keta L. Oettinger, Tariq Tajjioui, Kyle M. Von Ruden, Hailey M. Willner, Stephen Frank Spear
2025, Journal of Wildlife Management (89)
Invasive species management frameworks, such as the early detection of and rapid response to invasive species, use monitoring programs to detect new species occurrences. Resource managers use environmental DNA (eDNA) as one tool for these monitoring programs. An eDNA detection in a new location may lack perspective for resource managers...
Post-hatching maternal attendance in wild Burmese Pythons in southern Florida
Jacquelyn C. Guzy, Mark Robert Sandfoss, John-Kaarli M. Rentof, Judith E. Baird-Lujano, Genesis Aponte Santiago, Jose A. Torres, Lisa Marie McBride, Matthew Fox Metcalf, Amanda Marie Kissel, Christina Romagosa, Amy A. Yackel Adams, Brandon L. Welty, Melissa A. Miller, Matthew F. McCollister, Frank J. Mazzotti, Kristen Hart
2025, Herpetology Notes (18) 849-856
No abstract available....
Exploring the importance of metapopulation dynamics with population control strategies for invasive silver carp in the upper Mississippi River
Kassidy Frame, Gregory J. Sandland, Charles J. Labuzzetta, Grace L. Loppnow, Jessica C. Stanton, Yu-Chun Kao, Richard A. Erickson
2025, Journal of Wildlife Management (89)
Invasive bigheaded carps (Bighead Carp Hypophthalmichthys nobilis, Silver Carp Hypophthalmichthys molitrix, and their hybrids Hypophthalmichthys spp.) currently infest the Mississippi River Basin. Bigheaded carps can outcompete native species in invaded waters and can also transform the surrounding environment. Currently, resource managers seek to limit the population abundance of bigheaded carps and their range expansion...
Origin and evolution of mafic volcanism associated with 3 m.y. of andesite production at the Goat Rocks volcanic cluster, southern Washington Cascade Range
Kellie Taylor Wall, Anita L. Grunder, Joseph Biasi, Dominique Weis, Don Swanson, Mark E. Stelten
2025, Geological Society of America Bulletin
More than 3 m.y. of mafic volcanism near the Goat Rocks volcanic cluster in the southern Washington Cascade Range, USA, lends insight into the evolution of basalts and the subarc mantle at a long-lived, major arc volcanic locus. We contribute field observations, 40Ar/39Ar dates, paleomagnetic directions, and bulk rock and mineral...
Bioaccumulation and transfer of per- and polyfluoroalkyl substances (PFAS) in a stream and riparian food web contaminated by food processing wastewater
Christopher James Kotalik, Laura E. Hubbard, Brittany G. Perrotta, David M. Walters, Dana W. Kolpin, James L. Gray, Alison M. Zachritz, Johanna M. Kraus, Carrie E. Givens, Gary A. Lamberti, Karen A. Kidd
2025, Environmental Science & Technology (59) 19444-19456
We evaluated the bioaccumulation and transfer of per- and polyfluoroalkyl substances (PFAS) in a stream food web contaminated by a food processing facility. Abiotic (i.e., water, sediment, and foam) and biotic (i.e., algae, aquatic insect larvae and adults, fish, and riparian spiders) matrices were sampled upstream and downstream of the...
The U.S. Geological Survey, the U.S. Department of Defense, and the U.S. Intelligence Community—100 years of mapping and remote sensing collaboration, 1879–1979
Paul M. Young
2025, Circular 1552
IntroductionThe U.S. Geological Survey (USGS)—a Federal civilian agency—and U.S. military and intelligence agencies collaborate on mapping and remote sensing and have since the establishment of the USGS. The organizations exchange data and information and share technology to further their respective missions in service to the American people. Often referred to...
Clarifying the trophic state concept to advance macroscale freshwater science and management
Michael Frederick Meyer, Benjamin M. Kraemer, Carolina C. Barbosa, Davi G.F. Cuhna, Walter Dodds, Stephanie E. Hampton, César Ordóñez, Rachel M. Pilla, Amina Pollard, Joshua A. Culpepper, Alexander K. Fremier, Tyler V. King, Robert Ladwig, Dina M. Leech, Shin-Ichiro S. Matsuzaki, Isabella Oleksy, Simon N. Topp, Richard Woolway, Ludmila S Brighenti, Kate Colleen Fickas, Brian P. Lanouette, Jianning Ren, Mortimer Werther, Xiao Yang
2025, Ecosphere (16)
For over a century, ecologists have used the concept of trophic state (TS) to characterize an aquatic ecosystem's biological productivity. However, multiple TS classification schemes, each relying on a variety of measurable parameters as proxies for productivity, have emerged to meet use-specific needs. Frequently, chlorophyll a, phosphorus, and Secchi depth...
Variation in gene expression across infection status and elevation in a Hawaiian honeycreeper
Loren Cassin-Sackett, Katherine Maria McClure, Taylor Callicrate, Eben H. Paxton, Robert C. Fleischer
2025, Ecology and Evolution (15)
Introduced pathogens exert novel selection on hosts, and although many host species have experienced drastic population declines in the absence of adaptation, some hosts have adapted to highly virulent pathogens. For instance, mosquitoes and Plasmodium relictum introduced to the Hawaiian Islands have resulted in extinctions and catastrophic population declines due to avian...
Assessment of natural gas pipeline construction on stream temperature and turbidity in southwestern Virginia, 2017—25
Brendan M. Foster, Carly Marcella Maas, Alejandra Logan Flota
2025, Preprint
The natural gas pipeline network in the United States is extensive and often intersects streams and other sensitive habitats, yet there are limited case studies utilizing a comparative upstream-downstream approach to evaluate potential short- and long-term effects of pipeline stream crossing construction from pre-construction to post-site restoration. In 2017, the...
An integrated sensor network and data driven approach to satellite remote sensing of dissolved organic matter
Dulcinea Marie Avouris, Erin L Hestir, Jacob Fleck, Jeffrey A. Hansen, Brian A. Bergamaschi
2025, Earth and Space Science (12)
Traditional remote sensing retrieval models for water quality have historically relied on limited, localized data sets due to the prohibitive costs of extensive field campaigns and logistical challenges of collecting match-up data with satellite overpasses. As a result, these models often lack generalizability across seasons, tides, and sites. Furthermore, small...
Impacts of lake elevation decline on spawning habitat of a critical, native forage species
Sarah Barnes, Robert Al-Chokhachy, Phaedra Budy
2025, Transactions of the American Fisheries Society (154) 640-656
ObjectiveLake elevation decline is a global phenomenon with pronounced effects in arid regions that changes the characteristics of nearshore habitat area available to lacustrine spawners, potentially impacting recruitment and whole-lake food web dynamics. Our objective was to understand the potential effects of lake elevation decline on spawning habitat for the...
Clarifying the trophic state concept to advance macroscale freshwater science and management
Michael Frederick Meyer, Benjamin M. Kraemer, Carolina C. Barbosa, Davi G.F. Cuhna, Walter Dodds, Stephanie E. Hampton, César Ordóñez, Rachel M. Pilla, Amina Pollard, Joshua A. Culpepper, Alexander K. Fremier, Tyler V. King, Robert Ladwig, Dina M. Leech, Shin-Ichiro S Matsuzaki, Isabella Oleksy, Simon N. Topp, R. Iestyn Woolway, Ludmila S. Brighenti, Kate Fickas, Brian P. Lanouette, Jianning Ren, Mortimer Werther, Xiao Yang
2025, Ecosphere (16)
For over a century, ecologists have used the concept of trophic state (TS) to characterize an aquatic ecosystem's biological productivity. However, multiple TS classification schemes, each relying on a variety of measurable parameters as proxies for productivity, have emerged to meet use-specific needs. Frequently, chlorophyll a, phosphorus, and Secchi depth...
Grammar to graph—An approach for semantic transformation of annotations to triples
Dalia E. Varanka, Emily Abbott
2025, Scientific Investigations Report 2025-5064
Data annotation is the process of labeling data to show the outcome that a related data model should predict. In this study, annotation data were transformed into semantic graph triples, mainly for use with the Resource Description Framework (RDF), a type of entity-relationship-attribute data model for graph databases. The transformation...
Manipulation of the Symbiodiniaceae microbiome confers multigenerational impacts on symbioses and reproductive ecology of its Exaiptasia diaphana host
Mark Mccauley, Federica Montesanto, Samuel A. Bedgood, Cody Miner, Keyla Plichon, Virginia M. Weis, Sandra Loesgen
2025, The ISME Journal (19)
Symbiodiniaceae-associated microbiota strongly influence cnidarian symbioses. We systematically reduced the bacterial and fungal communities associated with Symbiodiniaceae to study potential effects on the cnidarian holobiont Exaiptasia diaphana (Aiptasia). Clonal anemones were inoculated with xenic Breviolum minutum (SSB01) and microbiome-manipulated cultures after antibacterial or antifungal treatment. The asexual reproduction of pedal laceration allowed for three...
Satellite tracking reveals heavy use of local MPAs by green turtles (Chelonia mydas) nesting in southeast Florida, USA
Glenn D. Goodwin, Kristen Hart, Abby C. Evans, Derek A. Burkholder
2025, Marine Biology (172)
Florida hosts a regionally important nesting aggregation of green turtles (Chelonia mydas) in the North Atlantic, yet internesting and post-nesting movements for this rookery remain poorly understood. Here, we used satellite telemetry to track 23 green turtles nesting on southeast Florida beaches from 2017 to 2021 to investigate their spatial...
A scientific vision and roadmap for earthquake rupture forecast developments, a USGS perspective
Edward H. Field, Alexandra Elise Hatem, Bruce E. Shaw, Morgan T. Page, P. Martin Mai, Kevin Ross Milner, Andrea L. Llenos, Andrew J. Michael, Frederick Pollitz, Jessica Ann Thompson Jobe, Thomas E. Parsons, Olaf Zielke, David R. Shelly, Alice-Agnes Gabriel, Devin McPhillips, Richard W. Briggs, Elizabeth S. Cochran, Nico Luco, Mark D. Petersen, Peter M. Powers, Justin Rubinstein, Allison Shumway, Nicholas van der Elst, Yuehua Zeng, Christopher DuRoss, Jason M. Altekruse
2025, Bulletin of the Seismological Society of America (115) 2523-2552
We articulate a scientific vision and roadmap for the development of improved Earthquake Rupture Forecast models, which are one of the two main modeling components used in modern seismic hazard and risk analysis. One primary future objective is to provide fully time-dependent models that include both elastic rebound and...
ECCOE Landsat quarterly calibration and validation report—Quarter 1, 2025
Md Obaidul Haque, Nahid Hasan, Ashish Shrestha, Rajagopalan Rengarajan, Mark Lubke, Daniel Steinwand, Paul Bresnahan, Jerad L. Shaw, Kathryn Ruslander, Esad Micijevic, Michael J. Choate, Cody Anderson, Jeff Clauson, Kurt Thome, Ed Kaita, Amit Angal, Raviv Levy, Jeff Miller, Leibo Ding, Cibele Teixeira Pinto
2025, Open-File Report 2025-1048
Executive Summary The U.S. Geological Survey Earth Resources Observation and Science Calibration and Validation (Cal/Val) Center of Excellence (ECCOE) focuses on improving the accuracy, precision, calibration, and product quality of remote-sensing data, leveraging years of multiscale optical system geometric and radiometric calibration and characterization experience. The ECCOE Landsat Cal/Val Team continually...
Fish composition in a complex freshwater estuary: Environmental DNA metabarcoding versus capture surveys
Anett S Trebitz, Joel C. Hoffman, Gregory S. Peterson, Chelsea I. Hatzenbuhler, Erik M. Pilgrim, Sara L. Okum, W. Lindsay Chadderton, Andrew J. Tucker, Nicholas Bogyo, Jared Thomas Myers
2025, Transactions of the American Fisheries Society (154) 657-674
ObjectiveThe potential for environmental DNA (eDNA) to disperse widely from source organisms enables high detection efficiency but raises questions about eDNA's ability to differentiate fine-scale spatial patterns relative to conventional fish capture data.MethodsWe evaluate these questions in the St. Louis River estuary—a...