Labeling poststorm coastal imagery for machine learning: Measurement of interrater agreement
Evan B. Goldstein, Daniel D. Buscombe, Eli D. Lazarus, Somya Mohanty, Shah N. Rafique, K A Anarde, Andrew D Ashton, Tomas Beuzen, Katherine A. Castagno, Nicholas Cohn, Matthew P. Conlin, Ashley Ellenson, Megan Gillen, Paige A. Hovenga, Jin-Si R. Over, Rose V. Palermo, Katherine Ratlif, Ian R Reeves, Lily H. Sanborn, Jessamin A. Straub, Luke A. Taylor, Elizabeth J. Wallace, Jonathan A. Warrick, Phillipe Alan Wernette, Hannah E Williams
2021, Earth and Space Science (8)
Classifying images using supervised machine learning (ML) relies on labeled training data—classes or text descriptions, for example, associated with each image. Data-driven models are only as good as the data used for training, and this points to the importance of high-quality labeled data for developing a ML...
Individual variation in temporal dynamics of post-release habitat selection
Simona Picardi, Nathan Ranc, Brian J. Smith, Peter S. Coates, Steven R. Mathews, David K. Dahlgren
2021, Frontiers in Conservation Science (2)
Translocated animals undergo a phase of behavioral adjustment after being released in a novel environment, initially prioritizing exploration and gradually shifting toward resource exploitation. This transition has been termed post-release behavioral modification. Post-release behavioral modification may also manifest as changes in habitat selection through time, and these temporal dynamics...
Historical changes in plant water use and need in the continental United States
Michael T Terck, David Thoma, John E. Gross, Kirk R. Sherrill, Stefanie Kagone, Gabriel B. Senay
2021, PLoS ONE (16)
A robust method for characterizing the biophysical environment of terrestrial vegetation uses the relationship between Actual Evapotranspiration (AET) and Climatic Water Deficit (CWD). These variables are usually estimated from a water balance model rather than measured directly and are often more representative of ecologically-significant changes than...
Modelling tilt noise caused by atmospheric processes at long periods for several horizontal seismometers at BFO—A reprise
W. Zurn, T. Forbriger, R. Widmer-Schnidrig, P. Duffner, Adam T. Ringler
2021, Geophysical Journal International (228) 927-943
Tilting of the ground due to loading by the variable atmosphere is known to corrupt very long period horizontal seismic records (below 10 mHz) even at the quietest stations. At BFO (Black Forest Observatory, SW-Germany), the opportunity arose to study these disturbances on a variety of simultaneously operated state-of-the-art...
Precipitation-runoff processes in the Merced River Basin, Central California, with prospects for streamflow predictability, water years 1952–2013
Kathryn M. Koczot, John C. Risley, JoAnn M. Gronberg, John M. Donovan, Kelly R. McPherson
2021, Scientific Investigations Report 2020-5150
The U.S. Geological Survey, in cooperation with the California Department of Water Resources (DWR), has constructed a new spatially detailed Precipitation-Runoff Modeling System (PRMS) model for the Merced River Basin, California, which is a tributary of the San Joaquin River in California. Operated through an Object User Interface (OUI) with...
LakeEnsemblR: An R package that facilitates ensemble modelling of lakes
Tadhg N. Moore, Jorrit P. Mesman, Robert Ladwig, Johannes Feldbauer, Freya Olsson, Rachel M. Pilla, Tom Shatwell, Jason J. Venkiteswaran, Austin D. Delany, Hilary Dugan, Kevin C. Rose, Jordan Read
2021, Environmental Modelling & Software (143)
Model ensembles have several benefits compared to single-model applications but are not frequently used within the lake modelling community. Setting up and running multiple lake models can be challenging and time consuming, despite the many similarities between the existing models (forcing data, hypsograph, etc.). Here we present an R package,...
Aquatic-terrestrial linkages control metabolism and carbon dynamics in a mid-sized, urban stream influenced by snowmelt
Ariel P. Reed, Edward G. Stets, Sheila F. Murphy, Emily Mullins
2021, Journal of Geophysical Research Biogeosciences (126)
Freshwater streams can exchange nutrients and carbon with the surrounding terrestrial environment through various mechanisms including physical erosion, flooding, leaf drop, and snowmelt. These aquatic-terrestrial interactions are crucial in carbon mobilization, transformation, ecosystem productivity, and have important implications for the role of freshwater ecosystems in the global carbon budget. We...
Developing bare-earth digital elevation models from structure-from-motion data on barrier islands
Nicholas Enwright, Christine J. Kranenburg, Brett Patton, P. Soupy Dalyander, Jenna A. Brown, Sarai Piazza, Wyatt C Cheney
2021, ISPRS Journal of Photogrammetry and Remote Sensing (180) 269-282
Unoccupied aerial systems can collect aerial imagery that can be used to develop structure-from-motion products with a temporal resolution well-suited to monitoring dynamic barrier island environments. However, topographic data created using photogrammetric techniques such as structure-from-motion represent the surface elevation including the vegetation canopy. Additional processing is required for estimating bare-earth elevation, which...
Hydrate formation on marine seep bubbles and the implications for water column methane dissolution
Xiaojing Fu, William F. Waite, Carolyn D. Ruppel
2021, Journal of Geophysical Research - Oceans (126)
Methane released from seafloor seeps contributes to a number of benthic, water column, and atmospheric processes. At seafloor seeps within the methane hydrate stability zone, crystalline gas hydrate shells can form on methane bubbles while the bubbles are still in contact with the seafloor or as the...
Bayesian change point quantile regression approach to enhance the understanding of shifting phytoplankton-dimethyl sulfide relationships in aquatic ecosystems
Zhongyao Liang, Yong Liu, Yaoyang Xu, Tyler Wagner
2021, Water Research (201)
Dimethyl sulfide (DMS) serves as an anti-greenhouse gas, plays multiple roles 7 in aquatic ecosystems, and contributes to the global sulfur cycle. The chlorophyll 8 a (CHL, an indicator of phytoplankton biomass)-DMS relationship is critical for 9 estimating DMS emissions from aquatic ecosystems. Importantly, recent research...
An updated assessment of status and trend in the distribution of the Cascades frog (Rana cascadae) in Oregon, USA
Adam Duarte, Christopher Pearl, Brome McCreary, Jennifer Rowe, Michael J. Adams
2021, Herpetological Conservation and Biology (16) 361-373
Conservation efforts need reliable information concerning the status of a species and their trends to help identify which species are in most need of assistance. We completed a comparative evaluation of the occurrence of breeding for Cascades Frog (Rana cascadae), an amphibian that is being considered for federal protection under...
Phytoplankton and cyanobacteria abundances in mid-21st century lakes depend strongly on future land use and climate projections
Karan Kakouei, B.M. Kraemer, O. Anneville, L. Carvalho, H. Feuchtmayr, Jennifer L. Graham, S. Higgins, F. Pomati, L.G. Rudstam, J.D. Stockwell, S.J. Thackeray, M. Vanni, R. Adrian
2021, Global Change Biology (27) 6409-6422
Land use and climate change are anticipated to affect phytoplankton of lakes worldwide. The effects will depend on the magnitude of projected land use and climate changes and lake sensitivity to these factors. We used random forests fit with long-term (1971–2016) phytoplankton and cyanobacteria abundance time...
Predicting non-native insect impact: Focusing on the trees to see the forest
Ashley N. Schulz, Angela M. Mech, Matthew P. Ayres, Kamal J.K. Gandhi, Nathan P. Havill, Daniel A. Herms, Angela Marie Hoover, Ruth A. Hufbauer, Andrew M. Liebhold, Travis D. Marsico, Kenneth F. Raffa, Patrick C. Tobin, Daniel R. Uden, Kathryn A. Thomas
2021, Biological Invasions (23) 3921-3936
Non-native organisms have invaded novel ecosystems for centuries, yet we have only a limited understanding of why their impacts vary widely from minor to severe. Predicting the impact of non-established or newly detected species could help focus biosecurity measures on species with the highest potential to...
Flow dynamics influence fish recruitment in hydrologically connected river-reservoir landscapes
J. Dattilo, Shannon K. Brewer, D. E. Shoup
2021, North American Journal of Fisheries Management (41) 1752-1763
Hydrologic processes are often important determinants of successful recruitment of native fishes. However, water management practices can result in abnormal changes in daily and seasonal hydrology patterns. Rarely has fish recruitment across river–reservoir landscapes been considered in relation to flow management, despite the direct relationship between reservoir water management and...
Geohydrology and water quality of the stratified-drift aquifers in West Branch Cayuga Inlet and Fish Kill Valleys, Newfield, Tompkins County, New York
Benjamin N. Fisher, Paul M. Heisig, William M. Kappel
2021, Scientific Investigations Report 2021-5064
From 2011 to 2016, the U.S. Geological Survey, in cooperation with the Town of Newfield and the Tompkins County Planning Department, performed a study of the stratified-drift aquifers in the West Branch Cayuga Inlet and Fish Kill Valleys in Newfield, Tompkins County, New York. Both confined and unconfined aquifers were...
The role of genome duplication in big sagebrush growth and fecundity
Bryce Richardson, Matthew Germino, Marcus V Warwell, Sven Buerki
2021, American Journal of Botany (108) 1405-1416
PremiseAdaptive traits can be dramatically altered by genome duplication. The study of interactions among traits, ploidy, and the environment are necessary to develop an understanding of how polyploidy affects niche differentiation and to develop restoration strategies for resilient native ecosystems.MethodsGrowth...
Surface energy balance of sub-Arctic roads with varying snow regimes and properties in permafrost regions
Lin Chen, Clifford I. Voss, Daniel Fortier, Jeffrey M. McKenzie
2021, Permafrost and Periglacial Processes (32) 681-701
Surface energy balance (SEB) strongly influences the thermal state of permafrost, cryohydrological processes, and infrastructure stability. Road construction and snow accumulation affect the energy balance of underlying permafrost. Herein, we use an experimental road section of the Alaska Highway to develop a SEB model to quantify the surface energy components...
GeoAI in the US Geological Survey for topographic mapping
E. Lynn Usery, Samantha T. Arundel, Ethan J. Shavers, Larry Stanislawski, Philip T. Thiem, Dalia E. Varanka
2021, Transactions in GIS (26) 25-40
Geospatial artificial intelligence (GeoAI) can be defined broadly as the application of artificial intelligence methods and techniques to geospatial data, processes, models, and applications. The application of these methods to topographic data and phenomena is a focus of research in the US Geological Survey (USGS)....
American eel personality and body length influence passage success in an experimental fishway
Matthew A. Mensinger, Allison M. Brehm, Alessio Mortelliti, Erik J. Blomberg, Joseph D. Zydlewski
2021, Journal of Applied Ecology (58) 2760-2769
Millions of dams impair watershed connectivity across the globe and have severely affected migratory fish populations. Fishways offer upstream passage opportunities, but artificial selection may be imposed by these structures. Using juvenile American eel Anguilla rostrata as a model species, we consider whether individual differences in behaviour (i.e. personality) and fish...
Groundwater, biodiversity, and the role of flow system scale
Allison R Aldous, Marshall W. Gannett
2021, Ecohydrology (14)
Groundwater-dependent ecosystems and species (GDEs) are found throughout watersheds at locations of groundwater discharge, yet not all GDEs are the same, nor are the groundwater systems supporting them. Groundwater moves along a variety of flow paths of different lengths and with different contributing areas, ranging from...
Development of demographic models to analyze populations with multi-year data—Using Agassiz’s Desert Tortoise (Gopherus agassizii) as a case study
Kristin H. Berry, Julie L. Yee
2021, Open-File Report 2018-1094
We developed a model for analyzing multi-year demographic data for long-lived animals and used data from a population of Agassiz’s desert tortoise (Gopherus agassizii) at the Desert Tortoise Research Natural Area in the western Mojave Desert of California as a case study. The study area was 7.77 square kilometers and...
An efficient Bayesian framework for updating PAGER loss estimates
Hae Young Noh, Kishor S. Jaiswal, Davis T. Engler, David J. Wald
2021, Earthquake Spectra Journal (36) 1719-1742
We introduce a Bayesian framework for incorporating time-varying noisy reported data on damage and loss information to update near real-time loss estimates/alerts for the U.S. Geological Survey’s Prompt Assessment of Global Earthquakes for Response (PAGER) system. Initial loss estimation by PAGER immediately following an earthquake includes several uncertainties. Historically, the...
Flooding duration and volume more important than peak discharge in explaining 18 years of gravel–cobble river change
Arielle Gervasi, Gregory Pasternack, Amy E. East
2021, Earth Surface Processes and Landforms (46) 3194-3212
Floods play a critical role in geomorphic change, but whether peak magnitude, duration, volume, or frequency determines the resulting magnitude of erosion and deposition is a question often proposed in geomorphic effectiveness studies. This study investigated that question using digital elevation model differencing to compare and...
Pollinator communities vary with vegetation structure and time since management within regenerating timber harvests of the Central Appalachian Mountains
Codey L. Mathis, Darin J. McNeil Jr., Monica R. Lee, Christina M. Grozinger, David I. King, Clint Otto, Jeffery A. Larkin
2021, Forest Ecology and Management (495)
Native pollinator populations across the United States are increasingly threatened by a multitude of ecological stressors. Although the drivers behind pollinator population declines are varied, habitat loss/degradation remains one of the most important threats. Forested landscapes, where the impacts of habitat loss/degradation are minimized, are known to support robust pollinator...
Estimates of water use associated with continuous oil and gas development in the Permian Basin, Texas and New Mexico, 2010–19
Joshua F. Valder, Ryan R. McShane, Joanna N. Thamke, Jeremy S. McDowell, Grady P. Ball, Natalie A. Houston, Amy E. Galanter
2021, Scientific Investigations Report 2021-5090
In 2015, the U.S. Geological Survey started a topical study to quantify water use in areas of continuous oil and gas (COG) development. The first phase of the study was completed in 2019 and analyzed the Williston Basin. The second phase of the study analyzed the Permian Basin using the...