Integrating sequence capture and restriction-site associated DNA sequencing to resolve recent radiations of pelagic seabirds
Joan Ferrer Obiol, Helen F. James, R. Terry Chesser, Vincent Bretagnolle, Jacob Gonzalez-Solis, Julio Rozas, Marta Riutort, Andreanna J. Welch
2021, Systematic Biology (70) 976-996
The diversification of modern birds has been shaped by a number of radiations. Rapid diversification events make reconstructing the evolutionary relationships among taxa challenging due to the convoluted effects of incomplete lineage sorting (ILS) and introgression. Phylogenomic data sets have the potential to detect patterns of phylogenetic incongruence, and to...
Reduced recruitment of Chinook salmon in a leveed bar-built estuary
Emily K. Chen, Mark J. Henderson
2021, Canadian Journal of Fisheries and Aquatic Sciences (78) 894-904
Estuaries are commonly touted as nurseries for salmonids, providing numerous advantages for smolts prior to ocean entry. In bar-built estuaries, sandbars form at the mouth of rivers during periods of low stream flow, closing access to the ocean and preventing outmigration. We evaluated how summer residency in a leveed bar-built...
Ground‐penetrating radar, electromagnetic induction, terrain, and vegetation observations coupled with machine learning to map permafrost distribution at Twelvemile Lake, Alaska
S. Campbell, Martin A. Briggs, S.P. Roy, T. A. Douglas, S. Saari
2021, Permafrost and Periglacial Processes (32) 407-426
We collected ground‐penetrating radar (GPR) and frequency‐domain electromagnetic induction (FDEM) profiles in 2011 and 2012 to identify the extent of permafrost relative to surface biomass and solar insolation around Twelvemile Lake near Fort Yukon, Alaska. We compared a Landsat‐derived biomass estimate and modeled solar insolation from...
Can modeling the geologic record contribute to constraining the tectonic source of the AD 1755 Great Lisbon earthquake?
Francisco Dourado, Pedro JM Costa, SeanPaul La Selle, Caesar Andrade, Ivana Bosnic, Guy R. Gelfenbaum
2021, Earth and Space Science (8)
The precise location of the seismic source of 1755 CE Great Lisbon earthquake is still uncertain. The aim of this work is to use an onland sedimentary record in southern Portugal to test and validate seismic sources for the earthquake. To achieve this, tsunami deposit thicknesses from...
Multi-region assessment of chemical mixture exposures and predicted cumulative effects in USA wadeable urban/agriculture-gradient streams
Paul M. Bradley, Celeste A. Journey, Kristin M. Romanok, Sara E. Breitmeyer, Daniel T. Button, Daren M. Carlisle, Bradley Huffman, Barbara Mahler, Lisa H. Nowell, Sharon L. Qi, Kelly L. Smalling, Ian R. Waite, Peter C. Van Metre
2021, Science of the Total Environment (773)
Chemical-contaminant mixtures are widely reported in large stream reaches in urban/agriculture-developed watersheds, but mixture compositions and aggregate biological effects are less well understood in corresponding smaller headwaters, which comprise most of stream length, riparian connectivity, and spatial biodiversity. During 2014–2017, the U.S. Geological Survey (USGS) measured 389 unique organic analytes (pharmaceutical,...
Urbanization’s influence on the distribution of mange in a carnivore revealed with multistate occupancy models
Craig D. Reddell, Fitsum Abadi, David K. Delaney, James W. Cain III, Gary W. Roemer
2021, Oecologia (195) 105-116
Increasing urbanization and use of urban areas by synanthropic wildlife has increased human and domestic animal exposure to zoonotic diseases and exacerbated epizootics within wildlife populations. Consequently, there is a need to improve wildlife disease surveillance programs to rapidly detect outbreaks and refine inferences regarding spatiotemporal disease dynamics. Multistate occupancy...
Hydrologic and hydraulic analyses of the Grand River, Red Cedar River, and Sycamore Creek near Lansing, Michigan
Matthew T. Whitehead, Chad J. Ostheimer
2021, Scientific Investigations Report 2020-5144
The U.S. Geological Survey (USGS) completed hydrologic and hydraulic analyses for selected reaches of the Grand River, Red Cedar River, and Sycamore Creek near Lansing, Michigan, in cooperation with the city of Lansing. The study comprised a 3.1-mile reach of the Grand River, a 30.3-mile reach of the Red Cedar...
Biotic and abiotic determinants of finescale dace distribution at the southern edge of their range
Evan C. J. Booher, Annika W. Walters
2021, Diversity and Distributions (27) 696-709
AimThe factors that set range limits for animal populations can inform management plans aimed at maintaining regional biodiversity. We examine abiotic and biotic drivers of the distribution of finescale dace (Chrosomus neogaeus) in two Great Plains basins to identify limiting factors for a threatened freshwater fish population...
Multi‐constrained catchment scale optimization of groundwater abstraction using linear programming
Mehrdis Danapour, Michael N. Fienen, Anker Lajer Hojberg, Karsten Hogh Jensen, Simon Stisen
2021, Groundwater (59) 503-516
Due to increasing water demands globally, freshwater ecosystems are under constant pressure. Groundwater resources, as the main source of accessible freshwater, are crucially important for irrigation worldwide. Over‐abstraction of groundwater leads to declines in groundwater levels; consequently, the groundwater inflow to streams decreases. The reduction in base flow and alteration...
Body condition of wintering Pacific greater white-fronted geese
Daniel A. Skalos, John M. Eadie, Daniel R. Yparraguirre, Melanie L. Weaver, Shaun L. Oldenburger, Craig R. Ely, Julie L. Yee, Joseph P. Fleskes
2021, Journal of Wildlife Management (85) 484-497
Extreme changes to key waterfowl habitats in the Klamath Basin (KB) on the Oregon–California border and the Sacramento Valley (SV) in California, USA, have occurred since 1980. The spatial distribution of Pacific greater white‐fronted geese (Anser albifrons sponsa; geese) has likewise changed among these areas and population size has grown...
Effect of nanoparticle size and natural organic matter composition on the bioavailability of polyvinylpyrrolidone- coated platinum nanoparticles to a model freshwater invertebrate
Mithun Sikder, Marie Noele Croteau, Brett Poulin, Mohammed Baalousha
2021, Environ. Sci. Technol. (55) 2452-2461
The bioavailability of dissolved Pt(IV) and polyvinylpyrrolidone-coated platinum nanoparticles (PtNPs) of five different nominal hydrodynamic diameters (20, 30, 50, 75, and 95 nm) was characterized in laboratory experiments using the model freshwater snail Lymnaea stagnalis. Dissolved Pt(IV) and all nanoparticle sizes were bioavailable to L. stagnalis. Platinum bioavailability, inferred from conditional uptake...
In-situ monitoring of infiltration-induced instability of I-70 embankment west of the Eisenhower-Johnson Memorial Tunnels, phase III
Alexandra Wayllace, Ning Lu, Benjamin B. Mirus
2021, Colorado Department of Transportation Report 2021-08
A new methodology that uses recent advances in unsaturated soil mechanics and hydrology was developed and tested. The approach consists of using soil suction and moisture content field information in the prediction of the likelihood of landslide movement. The testing ground was an active landslide on I-70 west of the...
Fluid-earthquake and earthquake-earthquake interactions in southern Kansas, USA
A. Verdecchia, Elizabeth S. Cochran, R. M Harrington
2021, JGR Solid Earth (126)
An increase in injection activity associated with energy production in southern Kansas starting in 2013 has been linked to the occurrence of more than 130,000 earthquakes (M −1.5 to 4.9) between 2014 and 2017. Studies suggest that the dramatic increase in seismicity rate is related to wastewater injection into the...
Sex-specific behaviors of hunted mule deer during rifle season
Patrick A. Rodgers, Hall Sawyer, Tony W. Mong, Sam Stephens, Matthew J. Kauffman
2021, Journal of Wildlife Management (85) 215-227
Animal populations face increased threats to mobility and access to critical habitat from a variety of human disturbances including roads, residential development, agriculture, and energy development. Disturbance from human hunting is known to alter habitat use in ungulates, but recent work suggests that hunting may also trigger the onset of...
Sea state from single optical images: A methodology to derive wind-generated ocean waves from cameras, drones and satellites
Rafael Almar, Erwin W. J. Bergsma, Patrico A. Catalan, Rodrigo Cienfuegos, Leandro Suarez, Felipe Lucero, Alexandre Nicolae Lerma, Franck Desmazes, Eleonora Perugini, Margaret L. Palmsten, Chris Chickadel
2021, Remote Sensing (13)
Sea state is a key variable in ocean and coastal dynamics. The sea state is either sparsely measured by wave buoys and satellites or modelled over large scales. Only a few attempts have been devoted to sea state measurements covering a large domain; in particular its estimation from optical images. With...
Relative influence of antecedent topography and sea-level rise on barrier-island migration
Justin L. Shawler, Daniel J. Ciarletta, Jennifer E. Connell, Bianca Q. Boggs, Jorge Lorenzo-Trueba, Christopher J. Hein
2021, Sedimentology (68) 639-669
The response of barrier islands to sea-level rise is modulated by combinations of coastal processes, eco-geomorphic feedbacks, and structural controls, such as antecedent topography. Interactions among these drivers can lead to complex and non-linear changes in island morphology and transitions between migrational, erosional, or progradational states. This study seeks to...
Learning augmented methods for matching: Improving invasive species management and urban mobility
Johan Bjorck, Qinru Shi, Carrie Brown-Lima, Jennifer Dean, Angela K. Fuller, Carla Gomes
2021, Conference Paper, Proceedings of the AAAI conference on artificial intelligence
With the success of machine learning, integrating learned models into real-world systems has become a critical chal- lenge. Naively applying predictions to combinatorial opti- mization problems can incur high costs, which has motivated researchers to consider learning augmented algorithms that can make use of faulty or incomplete predictions. Inspired by...
Applications of bistatic radar to volcano topography – A review of 10 years of TanDEM-X
Julia Kubanek, Michael Poland, Juliet Biggs
2021, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing (14) 3282-3302
The TanDEM-X satellite mission has revolutionized DEM generation from spaceborne synthetic aperture radar. In addition to the primary objective of generating a consistent digital elevation model with global coverage and unprecedented accuracy, the mission has acquired time series of topographic data over several volcanoes, providing an excellent opportunity to test...
Extrinsically reinforced hybrid speciation within Holarctic ermine (Mustela spp.) produces an insular endemic
Jocelyn P. Colella, Lindsey Frederick, Sandra L. Talbot, Joe Cook
2021, Diversity and Distributions (27) 747-762
AimRefugial isolation during glaciation is an established driver of speciation; however, the opposing role of interglacial population expansion, secondary contact, and gene flow on the diversification process remains less understood. The consequences of glacial cycling on diversity are complex and especially so for archipelago species, which experience...
Time since burning and rainfall characteristics impact post-fire debris flow initiation and magnitude
Luke A. McGuire, Francis K. Rengers, Nina S. Oakley, Jason W. Kean, Dennis M. Staley, Hui Tang, Marian de Orla-Barile, Ann M. Youberg
2021, Environmental Engineering and Geology (27) 43-56
The extreme heat from wildfire alters soil properties and incinerates vegetation, leading to changes in infiltration capacity, ground cover, soil erodibility, and rainfall interception. These changes promote elevated rates of runoff and sediment transport that increase the likelihood of runoff-generated debris flows. Debris flows are...
Modeling estrogenic activity in streams throughout the Potomac and Chesapeake Bay watersheds
Stephanie E. Gordon, Daniel K. Jones, Vicki S. Blazer, Luke R. Iwanowicz, Brianna Williams, Kelly Smalling
2021, Environmental Monitoring and Assessment (193)
Endocrine-disrupting compounds (EDCs), specifically estrogenic endocrine-disrupting compounds, vary in concentration and composition in surface waters under the influence of different landscape sources and landcover gradients. Estrogenic activity in surface waters may lead to adverse effects in aquatic species at both individual and population levels, often observed...
Invited perspective: What lies beneath a changing Arctic?
Jeffrey M. McKenzie, Barret L. Kurylyk, Michelle A. Walvoord, Victor F. Bense, Daniel Fortier, Chris Spence, Christophe Grenier
2021, The Cryosphere (15) 479-484
As permafrost thaws in the Arctic, new subsurface pathways open for the transport of groundwater, energy, and solutes. We identify different ways that these subsurface changes are driving observed surface consequences, including the potential for increased contaminant transport, modification to water resources, and enhanced rates of infrastructure (e.g. buildings and roads)...
Biological and chemical recovery of acidified Catskill Mountain streams in response to the Clean Air Act Amendments of 1990
Barry P. Baldigo, Scott D. George, Dylan R. Winterhalter, Michael McHale
2021, Atmospheric Environment (249)
Decades of acidic deposition have adversely affected aquatic and terrestrial ecosystems in acid-sensitive watersheds in parts of the eastern United States. The national Acid Rain Program (Title IV of the 1990 Clean Air Act Amendments - CAAA) helped reduce emissions of sulfur dioxide (SO2) and nitrogen oxides (NOx) and resulted...
Beware of spatial autocorrelation when applying machine learning algorithms to borehole geophysical logs
Neil Terry, Carole D. Johnson, Frederick Day-Lewis, Beth L. Parker, Lee D. Slater
2021, Groundwater (59) 315-319
Although many of the algorithms now considered to be machine learning algorithms (MLAs) have existed for nearly a century (e.g., Rosenblatt 1958), interest in MLAs has recently increased exponentially for solving data-driven problems across a variety of fields due to the expanded availability of large, complex datasets that may be difficult...
Volcanic seismicity beneath Chuginadak Island, Alaska (Cleveland and Tana volcanoes): Implications for magma dynamics and eruption forecasting
John Power, Diana Roman, John J. Lyons, Matthew M. Haney, Daniel J. Rasmussen, Terry Plank, K. P. Nicolaysen, Pavel Izbekov, C. Werner, A Kaufman
2021, Journal of Volcanology and Geothermal Research (412)
Cleveland and Tana are remote volcanoes located in the central Aleutian volcanic arc on the eastern end of the Islands of Four Mountains (IFM). The persistently active Mount Cleveland volcano, on the western side of Chuginadak Island, is surrounded by several closely spaced Quaternary volcanic centers including Carlisle, Herbert, Kagamil, Tana, and...