U.S. Geological Survey science strategy to address highly pathogenic avian influenza and its effects on wildlife health 2025–29
Andrew M. Ramey, Diann J. Prosser, Laura E. Hubbard, Guelaguetza Vazquez-Meves, Amy George, M. Camille Hopkins
2025, Circular 1558
Executive SummaryHighly pathogenic avian influenza (HPAI) is an ecologically and economically important animal disease that can also directly affect humans (a “zoonotic” disease). HPAI was once limited almost exclusively to domestic poultry but has rapidly adapted to diverse animal hosts. Viruses causing HPAI now appear to be maintained and dispersed...
Applying the resist-accept-direct (RAD) framework to wildlife health management
Wynne Emily Moss, Gregor W. Schuurman, Emily S. Almberg, Danielle Buttke, Nathan L. Galloway, Samantha E.J. Gibbs, Anne Hubbs, Katherine Richgels, C. LeAnn White, Paul C. Cross
2025, BioScience
Wildlife diseases can have substantial impacts on wildlife populations as well as on human and domestic animal health and well-being. Although many agencies and stakeholders share a goal of supporting wildlife health, reducing wildlife disease burden is complicated by a scarcity of effective interventions for wildlife, competition for funds, and...
Hydraulic connectivity and hydrochemistry influence microbial community structure in agriculturally-affected alluvial aquifers in the Midwestern United States
Hunter Schroer, Kendra M. Markland, Fangqiong Ling, Craig L. Just
2025, Environmental Science and Technology (59) 12279-12291
Alluvial aquifers can provide ecosystem services and drinking water, but much remains unknown about human effects on aquifer microbiomes. Therefore, we used amplicon sequencing and hydrochemical characterization to pair microbial communities with environmental conditions across 37 alluvial aquifer wells. The study region spanned eastern Iowa and southern Minnesota (USA) and...
Assimilation of reduced carbon triggers platinum alloy saturation in mafic and ultramafic magmas
Ying Zhou Li, William D. Smith, Michael Jenkins, Zhuosen Yao, James E. Mungall
2025, Economic Geology (120) 1025-1036
It is generally observed that magmatic sulfide ores have higher ratios of Pd/Pt than the mantle-like values of their parental magmas. This discrepancy has defied simple explanation because the partitioning behavior of both elements between sulfide and silicate liquids is very similar. Assimilation of sulfur- and carbon-rich country rocks by...
A generalized deep learning model to detect and classify volcano seismicity
David Fee, Darren Tan, John J. Lyons, Mariangela Sciotto, Andrea Cannata, Alicia J. Hotovec-Ellis, Tarsilo Girona, Aaron Wech, Diana Roman, Matthew M. Haney, Silvio De Angelis
2025, Volcanica (8) 305-323
Volcano seismicity is often detected and classified based on its spectral properties. However, the wide variety of volcano seismic signals and increasing amounts of data make accurate, consistent, and efficient detection and classification challenging. Machine learning (ML) has proven very effective at detecting and classifying tectonic seismicity, particularly using Convolutional...
Evaluating the influence of constructed subtidal reefs on marsh shoreline erosion, sediment deposition, and wave energy
Kathryn Smith, Jonathan L. Pitchford, Eric L. Sparks, Michael J. Archer, Matthew Virden, Joseph F. Terrano, Christopher G. Smith
2025, Estuaries and Coasts (48)
Salt marshes play a critical role in providing economic and ecological benefits but are susceptible to shoreline erosion. Natural and nature-based features (NNBF), such as breakwater reefs, are often used to reduce shoreline exposure to wave action and provide biogenic benefits. However, waves and water level are also responsible for...
Risk implications of Poisson assumptions and declustering inferred from a fully time-dependent earthquake forecast
Edward H. Field, Kevin Ross Milner, Keith A. Porter
2025, Earthquake Spectra (41) 1977-1997
We use the Third Uniform California Earthquake Rupture Forecast Epidemic Type Aftershock Sequence model, which is fully time-dependent in terms of including spatiotemporal clustering, to evaluate the effects of the Poisson assumption and declustering algorithms on statewide loss exceedance curves. The model is simulation based, meaning it...
Assessment of continuous oil and gas resources in the Upper Cretaceous Niobrara Formation in the Southwestern Wyoming Province, Wyoming and Colorado, 2024
Kira K. Timm, Christopher J. Schenk, Jane S. Hearon, Thomas M. Finn, Sarah E. Gelman, Cheryl A. Woodall, Tracey J. Mercier, Andrea D. Cicero, Ronald M. Drake II, Geoffrey S. Ellis, Michael H. Gardner, Benjamin G. Johnson, Jenny H. Lagesse, Phuong A. Le, Heidi M. Leathers-Miller, Scott S. Young
2025, Fact Sheet 2025-3025
Using a geology-based assessment methodology, the U.S. Geological Survey estimated undiscovered, technically recoverable mean continuous resources of 703 million barrels of oil and 5.8 trillion cubic feet of gas in the Niobrara Formation in the Southwestern Wyoming Province, Wyoming and Colorado....
Expanding national-scale wildlife disease surveillance systems with research networks
Kim M. Pepin, Matthew A. Combs, Guillaume Bastille-Rousseau, M.E. Craft, Paul C. Cross, M.A. Diuk-Wasser, R.B. Gagne, Travis Gallo, Tyler Garwood, J.D. Heale, J. Hewitt, J. Hoy-Petersen, Jennifer L. Malmberg, Jennifer M. Mullinax, L. Plimpton, Lauren Smith, M.C. VanAcker, J.C. Chandler, W. David Walter, Grete WIlson-Henjum, George Wittemyer, Kezia R. Manlove
2025, Ecology and Evolution (15)
Efficient learning about disease dynamics in free-ranging wildlife systems can benefit from active surveillance that is standardized across different ecological contexts. For example, active surveillance that targets specific individuals and populations with standardized sampling across ecological contexts (landscape-scale targeted surveillance) is important for developing a mechanistic understanding of disease emergence,...
Targeted quantitation of 6ppd-quinone in fish tissue samples with liquid chromatography-tandem mass spectrometry
Adam H. Moody, David J. Soucek, David A. Alvarez
2025, Environmental Toxicology and Chemistry (44) 2807-2817
The tire additive transformation product N-(1,3-dimethylbutyl)-N’-phenyl-p-phenylenediamine-quinone (6PPD-quinone) has recently garnered global attention due to its acute toxicity to some salmonids, such as coho salmon (Oncorhynchus kisutch), and its ubiquitous presence in urban stormwater systems. In the present study, we developed and compared the extraction efficiency of two sample preparation methodologies for...
Human perturbations to mercury in global rivers
Dong Peng, Zeli Tan, Tengfei Yuan, Peipei Wu, Zhengcheng Song, Peng Zhang, Shaojian Huang, Yanxu Zhang, Ting Lei, Beth Middleton, Jeroen E. Sonke, Guangchun Lei, Jianhua Gao
2025, Science Advances (11)
Mercury compounds are potent neurotoxins that pose threats to human health, primarily through fish consumption. Rivers, critical for drinking water and food supply, have seen rapid increases in mercury concentrations and export to coastal margins since the Industrial Revolution (~1850). However, patterns of these changes remain understudied, limiting assessments of...
Population growth of threatened Gulf Sturgeon may be limited by the frequency of adult episodic mortality events
Stephen W. Parker, William E. Pine III, Brian D. Healy, James E. Hines
2025, Marine and Coastal Fisheries: Dynamics, Management and Ecosystem Science (17)
ObjectiveWe identified spatial and temporal variation in population trends for Gulf Sturgeon Acipenser desotoi (previously known as Acipenser oxyrinchus desotoi) across the species’ range to inform recovery strategies. We also assessed whether adult survival or recruitment more strongly influences population change.MethodsWe analyzed adult Gulf Sturgeon...
Water quality-based risk assessment for zebra mussel establishment: A case study of single- and multiple-factor methods in northern temperate lakes
Victoria Christensen, Leon R. Katona, Hailey Elizabeth Trompeter, Ryan P. Maki, James C. Smith, Daniel E. Sandborn
2025, Lake and Reservoir Management (41) 124-142
Most previous research has used an individual water quality parameter, such as calcium, to predict likelihood of zebra mussel establishment in lakes; we employed two multiple-factor methods, our own susceptibility index for zebra mussels in lakes (SIZL) and aragonite saturation state, to evaluate the risk of mussel establishment. Thirty sites...
High-pass corner frequency selection and review tool for use in ground-motion processing
Maria E. Ramos-Sepulveda, Scott J. Brandenberg, Tristan E Buckreis, Grace Alexandra Parker, Jonathan P. Stewart
2025, Seismological Research Letters (96) 3244-3252
Raw seismological waveform data contain noise from the instrument’s surroundings and the instrument itself that can dominate recordings at low and high frequencies. To use these data in ground‐motion modeling, the effects of noise on the signals must be reduced and the signals’ usable frequency range identified. We present automated...
Bioaccumulation and trophic transfer of selenium in a large oligotrophic river
Christopher A. Mebane, A. Robin Stewart, Erin Murray, Terry M. Short, Veronika A. Kocen, Lauren M. Zinsser
2025, Environmental Toxicology and Chemistry (44) 2864-2888
In flowing waters with elevated selenium concentrations, fish are often considered to be at risk from selenium toxicity owing to dietary exposure and accumulation in ovary tissues and subsequent deformities in developing larvae. We studied selenium throughout components of the aquatic food webs at geomorphically distinct locations along the oligotrophic...
Co-location of sheep grazing and solar energy production yields agrotechnological synergies
Nikola Kochendoerfer, A. Sophie Westbrook, Christina E. McMillan, P. Andrew Lapierre, Muhammad A. Zaman, Scott H. Morris, Antonio DiTommaso, Steven Mark Grodsky
2025, Agricultural Systems (229)
CONTEXT Agrivoltaics—the co-location of solar energy and agricultural production—may reduce land-use competition and boost revenues for landowners. Sheep grazing in solar facilities (i.e., solar grazing/agrivoltaic grazing systems) is increasingly common in agricultural areas. Solar grazing can provide land access to flock owners and support agricultural viability via payments for vegetation...
Estimating disease prevalence from preferentially sampled, pooled data
Clinton P. Pollock, Andrew Hoegh, Kathryn Irvine, Luz de Wit, Brian Reichert
2025, Journal of Data Science (23) 542-559
After the onset of the COVID-19 pandemic, scientific interest in coronaviruses endemic in animal populations has increased dramatically. However, investigating the prevalence of disease in animal populations across the landscape, which requires finding and capturing animals can be difficult. Spatial random sampling over...
Engineering and risk research—A strategic vision for extending USGS earthquake science to risk assessment and mitigation
Kishor S. Jaiswal, Sanaz Rezaeian, Nico Luco, N. Simon Kwong, Andrew James Makdisi, H. Benjamin Mason, Robert E. Chase, Zachary Alan Kortum
2025, Circular 1555
As a part of the U.S. Geological Survey (USGS) Natural Hazards Mission Area, the Engineering and Risk Project (ERP) of the Geologic Hazards Science Center conducts civil engineering research to extend natural hazards science to risk assessments. The ERP includes predominantly, but not exclusively, staff funded by the USGS Earthquake...
Distribution, abundance, and breeding activities of the Southwestern Willow Flycatcher at Marine Corps Base Camp Pendleton, California—2024 annual report
Scarlett L. Howell, Barbara E. Kus
2025, Open-File Report 2025-1023
Executive SummaryThe purpose of this report is to provide the Marine Corps with an annual summary of the distribution, abundance, and breeding activity of the endangered Southwestern Willow Flycatcher (Empidonax traillii extimus; flycatcher) at Marine Corps Base Camp Pendleton (MCBCP or “Base”). Surveys for the flycatcher were conducted on Base...
Expanding barriers: Impassable gaps interior to distribution of an isolated mountain-dwelling species
Erik A. Beever, Adam B. Smith, David H. Wright, Tom Rickman, Francis D. Gerraty, Joseph A.E. Stewart, Alisha M. Gill, Kelly Klingler, Megan M. Robinson
2025, Ecosphere (16)
Global change is expected to expand and shrink species' distributions in complex ways beyond just retraction at warm edges and expansion at cool ones. Detecting these changes is complicated by the need for robust baseline data for comparison. For instance, gaps in species' distributions may reflect long-standing patterns, recent...
Status and trends of forest bird populations at Hakalau Forest National Wildlife Refuge, 1987–2024
Noah Hunt, Steve Kendall, Trevor Bak, Richard J. Camp
2025, Hawaii Cooperative Studies Unit Technical Report HCSU-117
Since 1985, the Hakalau Forest Unit of the Big Island National Wildlife Refuge Complex (hereafter, Hakalau) has protected the largest endemic forest bird diversity in the State of Hawaii. This includes three endangered and one threatened species and their habitats. Hakalau’s vast area (155 km2), mostly high elevation (>1500 m)...
Application of mercury stable isotopes to examine sources and hydrologic factors impacting mercury bioaccumulation and cycling in invertebrates of a model saline lake
Samuel Francisco Lopez, Sarah E. Janssen, Michael T. Tate, Frank J. Black, Hannah Erin Mcilwain, Laura Elizabeth Flucke, Jacob M. Ogorek, William P. Johnson
2025, Water Research (284)
Invertebrates, such as brine shrimp and brine flies, are key prey items for millions of resident and migratory birds that utilize saline lakes such as Great Salt Lake (GSL). Elevated methylmercury (MeHg) in invertebrate and waterfowl species of GSL has been assumed to be linked to elevated MeHg in GSL’s...
Challenges and priorities for climate-informed invasive species management across multiple scales
A.E. Evans, L. Brewington, Carrie Jean Brown-Lima, E. Fusco, R.M. Gregg, D. Lieurance, Elliott W. Parsons, R.C. Nagy, Lindsey Thurman, Toni Lyn Morelli
2025, Conservation Science and Practice (7)
In recent decades, substantial evidence has accumulated regarding the effects of climate change on the establishment, spread, and impact of invasive species. While the importance of incorporating climate change into invasive species management and policy is increasingly recognized, practitioner experiences and perspectives are often overlooked. Consequently, invasive species research may...
Concentration dependency of PFOS bioaccumulation by freshwater benthic algae
Alison M. Zachritz, Jeffery A. Steevens, Daniele A. Miranda, Brittany G. Perrotta, Rebecca A. Dorman, Heather D. Whitehead, Erin L. Pulster, David Walters, David J. Soucek, Graham F. Peaslee, Gary A. Lamberti
2025, ACS ES&T Water (5) 4415-4422
Although perfluorooctanesulfonic acid (PFOS) has been voluntarily phased out, it remains the most abundant and frequently detected PFAS compound in biota worldwide. A deeper understanding of how PFOS enters the aquatic food web at the energetic base is needed to better characterize and predict the general patterns of PFAS trophic...
Quantifying the substantive influence of public comment on United States federal environmental decisions under NEPA
Ashley Stava, Wayne E. Thogmartin, Robert Merideth, Steven Bethard, Faiz Currim, Jonathan J. Derbridge, Kirk Emerson, Egoitz Laparra, Aaron M. Lien, Emily McGovern, Justin Pidot, Marc Miller, Krista Romero-Carvenas, Blaze Smith, Carly Winnebald, Laura Lopez-Hoffman
2025, Environmental Research Letters (20)
A citizen’s right to comment on, and criticize, government decisions makes a difference. The U.S. National Environmental Policy Act of 1969 (NEPA) institutionalized public engagement in environmental review in the belief it would lead to better decisions and more sustainable outcomes. But, 50 years later, NEPA’s public comment process has...