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Observations of pockmark flow structure in Belfast Bay, Maine, Part 3: implications for sediment transport
Christina L. Fandel, Thomas C. Lippmann, Diane L. Foster, Laura L. Brothers
2017, Geo-Marine Letters (37) 23-34
Current observations and sediment characteristics acquired within and along the rim of two pockmarks in Belfast Bay, Maine, were used to characterize periods of sediment transport and to investigate conditions favorable to the settling of suspended sediment. Hourly averaged Shields parameters determined from horizontal current velocity profiles within the center...
Simple, efficient allocation of modelling runs on heterogeneous clusters with MPI
David I. Donato
2017, Environmental Modelling and Software (88) 48-57
In scientific modelling and computation, the choice of an appropriate method for allocating tasks for parallel processing depends on the computational setting and on the nature of the computation. The allocation of independent but similar computational tasks, such as modelling runs or Monte Carlo trials, among the nodes of a...
Volume of larvae Is the most important single predictor of mass temperatures in the forensically important Calliphorid, Chrysomya megacephala (Diptera: Calliphoridae)
S. V. Gruner, D. H. Slone, J.L. Capinera, M. P. Turco
2017, Journal of Medical Entomology (54) 30-34
Calliphorid species form larval aggregations that are capable of generating heat above ambient temperature. We wanted to determine the relationship between volume, number of larvae, and different combinations of instars on larval mass heat generation. We compared different numbers of Chrysomya megacephala (F.) larvae (40, 100, 250, 600, and 2,000),...
Primary sources and toxicity of PAHs in Milwaukee-area streambed sediment
Austin K. Baldwin, Steven R. Corsi, Michelle A. Lutz, Christopher G. Ingersoll, Rebecca A. Dorman, Christopher Magruder, Matthew Magruder
2017, Environmental Toxicology and Chemistry (36) 1622-1635
High concentrations of polycyclic aromatic hydrocarbons (PAHs) in streams can be a significant stressor to aquatic organisms. To understand the likely sources and toxicity of PAHs in Milwaukee-area streams, streambed sediment samples from 40 sites and parking lot dust samples from 6 sites were analyzed for 38 parent PAHs and...
Observations of pockmark flow structure in Belfast Bay, Maine, Part 2: evidence for cavity flow
Christina L. Fandel, Thomas C. Lippmann, Diane L. Foster, Laura L. Brothers
2017, Geo-Marine Letters (37) 15-22
Pockmark flow circulation patterns were investigated through current measurements along the rim and center of two pockmarks in Belfast Bay, Maine. Observed time-varying current profiles have a complex vertical and directional structure that rotates significantly with depth and is strongly dependent on the phase of the tide. Observations of the...
Effects of varying obliquity on Martian sublimation thermokarst landforms
Colin M. Dundas
2017, Icarus (281) 115-120
Scalloped depressions in the Martian mid-latitudes are likely formed by sublimation of ice-rich ground. The stability of subsurface ice changes with the planetary obliquity, generally becoming less stable at lower axial tilt. As a result, the relative rates of sublimation and creep change over time. A landscape evolution model shows...
Bed texture mapping in large rivers using recreational-grade sidescan sonar
Daniel Hamill, Joseph M. Wheaton, Daniel D. Buscombe, Paul E. Grams, Theodore S. Melis
2017, Conference Paper, River Flow 2016--Eighth International Conference on Fluvial Hydraulics
The size-distribution and spatial organization of bed sediment, or bed ‘texture’, is a fundamental attribute of natural channels and is one important component of the physical habitat of aquatic ecosystems. ‘Recreational-grade’ sidescan sonar systems now offer the possibility of imaging, and subsequently quantifying bed texture at high resolution with minimal...
A computational fluid dynamics modeling study of guide walls for downstream fish passage
Kevin Mulligan, Brett Towler, Alexander J. Haro, David P. Ahlfeld
2017, Ecological Engineering (99) 324-332
A partial-depth, impermeable guidance structure (or guide wall) for downstream fish passage is typically constructed as a series of panels attached to a floating boom and anchored across a water body (e.g. river channel, reservoir, or power canal). The downstream terminus of the wall is generally located nearby to a...
Estimating occurrence and detection probabilities for stream-breeding salamanders in the Gulf Coastal Plain
Jennifer Y. Lamb, J. Hardin Waddle, Carl P. Qualls
2017, Journal of Herpetology (51) 102-108
Large gaps exist in our knowledge of the ecology of stream-breeding plethodontid salamanders in the Gulf Coastal Plain. Data describing where these salamanders are likely to occur along environmental gradients, as well as their likelihood of detection, are important for the prevention and management of amphibian declines. We used presence/absence...
Computing spatial correlation of ground motion intensities for ShakeMap
Sarah Verros, David J. Wald, Charles Worden, Mike Hearne, Mahadevan Ganesh
2017, Computers & Geosciences (99) 145-154
Modeling the spatial correlation of ground motion residuals, caused by coherent contributions from source, path, and site, can provide valuable loss and hazard information, as well as a more realistic depiction of ground motion intensities. The U.S. Geological Survey (USGS) software package, ShakeMap, utilizes a deterministic empirical approach to estimate...
Spatially explicit modeling in ecology: A review
Donald L. DeAngelis, Simeon Yurek
2017, Ecosystems (20) 284-300
The use of spatially explicit models (SEMs) in ecology has grown enormously in the past two decades. One major advancement has been that fine-scale details of landscapes, and of spatially dependent biological processes, such as dispersal and invasion, can now be simulated with great precision, due to improvements in computer...
Soils mediate the impact of fine woody debris on invasive and native grasses as whole trees are mechanically shredded into firebreaks in piñon-juniper woodlands
Zachary T. Aanderud, Donald R. Schoolmaster Jr., Deborah Rigby, Jordon Bybee, Tayte Campbell, Bruce A. Roundy
2017, Journal of Arid Environments (137) 60-68
To stem wildfires, trees are being mechanically shredded into firebreaks with the resulting fine woody debris (FWD) potentially exerting immense control over soil and plants. We linked FWD-induced changes in microbial activity and nutrient availability to the frequency of Bromus tectorum and three native, perennial grasses across 31 piñon-juniper woodlands,...
Can private land conservation reduce wildfire risk to homes? A case study in San Diego County, California, USA
Van Butsic, Alexandra D. Syphard, Jon E. Keeley, Avi Bar-Massada
2017, Landscape and Urban Planning (157) 161-169
The purchase of private land for conservation purposes is a common way to prevent the exploitation of sensitive ecological areas. However, private land conservation can also provide other benefits, one of these being natural hazard reduction. Here, we investigated the impacts of private land conservation on fire risk to homes...
AnimalFinder: A semi-automated system for animal detection in time-lapse camera trap images
Jennifer L. Price Tack, Brian S. West, Conor P. McGowan, Stephen S. Ditchkoff, Stanley J. Reeves, Allison Keever, J. Barry Grand
2017, Ecological Informatics (36) 145-151
Although the use of camera traps in wildlife management is well established, technologies to automate image processing have been much slower in development, despite their potential to drastically reduce personnel time and cost required to review photos. We developed AnimalFinder in MATLAB® to identify animal presence in time-lapse camera trap...
Development of the oriental latrine fly, Chrysomya megacephala (Diptera: Calliphoridae), at five constant temperatures
S. V. Gruner, D. H. Slone, J.L. Capinera, M. P. Turco
2017, Journal of Medical Entomology (54) 290-298
Chrysomya megacephala (Fabricius) is a forensically important fly that is found throughout the tropics and subtropics. We calculated the accumulated development time and transition points for each life stage from eclosion to adult emergence at five constant temperatures: 15, 20, 25, 30, and 35 °C. For each transition, the 10th, 50th,...
Detection limits of quantitative and digital PCR assays and their influence in presence-absence surveys of environmental DNA
Margaret Hunter, Robert M. Dorazio, John S. Butterfield, Gaia Meigs-Friend, Leo Nico, Jason A. Ferrante
2017, Molecular Ecology Resources (17) 221-229
A set of universal guidelines is needed to determine the limit of detection (LOD) in PCR-based analyses of low concentration DNA. In particular, environmental DNA (eDNA) studies require sensitive and reliable methods to detect rare and cryptic species through shed genetic material in environmental samples. Current strategies for assessing detection...
Combining citizen science species distribution models and stable isotopes reveals migratory connectivity in the secretive Virginia rail
Auriel M. V. Fournier, Alexis R. Sullivan, Joseph K. Bump, Marie Perkins, Mark C. Shieldcastle, Sammy L. King
2017, Journal of Applied Ecology (54) 618-627
Stable hydrogen isotope (δD) methods for tracking animal movement are widely used yet often produce low resolution assignments. Incorporating prior knowledge of abundance, distribution or movement patterns can ameliorate this limitation, but data are lacking for most species. We demonstrate how observations reported by citizen scientists can...
How will predicted land-use change affect waterfowl spring stopover ecology? Inferences from an individual-based model
William S. Beatty, Dylan C. Kesler, Elisabeth B. Webb, Luke W. Naylor, Andrew H. Raedeke, Dale D. Humburg, John M. Coluccy, Gregory J. Soulliere
2017, Journal of Applied Ecology (54) 926-934
Habitat loss, habitat fragmentation, overexploitation and climate change pose familiar and new challenges to conserving natural populations throughout the world. One approach conservation planners may use to evaluate the effects of these challenges on wildlife populations is scenario planning.We developed an individual-based model to evaluate the effects...
Evaluating nest supplementation as a recovery strategy for the endangered rodents of the Florida Keys
Michael V. Cove, Theodore R. Simons, Beth Gardner, Andrew S. Maurer, Allan F. O’Connell
2017, Restoration Ecology (25) 253-260
The Key Largo woodrat (Neotoma floridana smalli) and Key Largo cotton mouse (Peromyscus gossypinus allapaticola) are federally endangered subspecies endemic to the tropical hardwood hammocks of Key Largo, Florida. Woodrats are considered generalists in habitat and diet, yet a steady decline in natural stick nests and capture rates over the...
Hydrologic restoration in a dynamic subtropical mangrove-to-marsh ecotone
Rebecca J. Howard, Richard H. Day, Ken W. Krauss, Andrew S. From, Larry K. Allain, Nicole Cormier
2017, Restoration Ecology (25) 471-482
Extensive hydrologic modifications in coastal regions across the world have occurred to support infrastructure development, altering the function of many coastal wetlands. Wetland restoration success is dependent on the existence of hydrologic regimes that support development of appropriate soils and the growth and persistence of wetland vegetation. In Florida, United...
Breeding birds in managed forests on public conservation lands in the Mississippi Alluvial Valley
Daniel J. Twedt, R. Randy Wilson
2017, Forest Ecology and Management (384) 180-190
Managers of public conservation lands in the Mississippi Alluvial Valley have implemented forest management strategies to improve bottomland hardwood habitat for target wildlife species. Through implementation of various silvicultural practices, forest managers have sought to attain forest structural conditions (e.g., canopy cover, basal area, etc.) within values postulated to benefit wildlife....
Improving spatio-temporal benefit transfers for pest control by generalist predators in cotton in the southwestern U.S.
Ruscena Wiederholt, Kenneth J. Bagstad, Gary F. McCracken, Jay E. Diffendorfer, John B. Loomis, Darius J. Semmens, Amy L. Russell, Chris Sansone, Kelsie LaSharr, Paul M. Cryan, Claudia Reynoso, Rodrigo A. Medellin, Laura Lopez-Hoffman
2017, International Journal of Biodiversity Science, Ecosystem Services and Management (13) 27-39
Given rapid changes in agricultural practice, it is critical to understand how alterations in ecological, technological, and economic conditions over time and space impact ecosystem services in agroecosystems. Here, we present a benefit transfer approach to quantify cotton pest-control services provided by a generalist predator, the Mexican free-tailed bat (Tadarida...
Larval aquatic insect responses to cadmium and zinc in experimental streams
Christopher A. Mebane, Travis S. Schmidt, Laurie S. Balistrieri
2017, Environmental Toxicology and Chemistry (36) 749-762
To evaluate the risks of metal mixture effects to natural stream communities under ecologically relevant conditions, the authors conducted 30-d tests with benthic macroinvertebrates exposed to cadmium (Cd) and zinc (Zn) in experimental streams. The simultaneous exposures were with Cd and Zn singly and with Cd+Zn mixtures at environmentally relevant...
Camera system considerations for geomorphic applications of SfM photogrammetry
Adam R. Mosbrucker, Jon J. Major, Kurt R. Spicer, John Pitlick
2017, Earth Surface Processes and Landforms (42) 969-986
The availability of high-resolution, multi-temporal, remotely sensed topographic data is revolutionizing geomorphic analysis. Three-dimensional topographic point measurements acquired from structure-from-motion (SfM) photogrammetry have been shown to be highly accurate and cost-effective compared to laser-based alternatives in some environments. Use of consumer-grade digital cameras to generate terrain models and derivatives is...
Analysis of local slopes at the InSight landing site on Mars
Robin L. Fergason, Randolph L. Kirk, Glen E. Cushing, Donna M. Galuszka, Matthew P. Golombek, Trent M. Hare, Elpitha Howington-Kraus, Devin M Kipp, Bonnie L. Redding
2017, Space Science Reviews (211) 109-133
To evaluate the topography of the surface within the InSight candidate landing ellipses, we generated Digital Terrain Models (DTMs) at lander scales and those appropriate for entry, descent, and landing simulations, along with orthoimages of both images in each stereopair, and adirectional slope images. These products were used to assess...