Relationships between diatoms and tidal environments in Oregon and Washington, USA
Yuki Sawai, Benjamin P. Horton, Andrew C. Kemp, Andrea D. Hawkes, Tamostsu Nagumo, Alan R. Nelson
2016, Diatom Research (31) 17-38
A new regional dataset comprising 425 intertidal diatom taxa from 175 samples from 11 ecologically diverse Oregon and Washington estuaries illustrates the importance of compiling a large modern dataset from a range of sites. Cluster analyses and detrended correspondence analysis of the diatom assemblages identify distinct vertical zones within supratidal,...
USGS approach to real-time estimation of earthquake-triggered ground failure - Results of 2015 workshop
Kate E. Allstadt, Eric M. Thompson, David J. Wald, Michael W. Hamburger, Jonathan W. Godt, Keith L. Knudsen, Randall W. Jibson, M. Anna Jessee, Jing Zhu, Michael Hearne, Laurie G. Baise, Hakan Tanyas, Kristin D. Marano
2016, Open-File Report 2016-1044
The U.S. Geological Survey (USGS) Earthquake Hazards and Landslide Hazards Programs are developing plans to add quantitative hazard assessments of earthquake-triggered landsliding and liquefaction to existing real-time earthquake products (ShakeMap, ShakeCast, PAGER) using open and readily available methodologies and products. To date, prototype global statistical models have been developed and...
Review and synthesis: Changing permafrost in a warming world and feedbacks to the Earth System
Guido Grosse, Scott Goetz, A. David McGuire, Vladimir E. Romanovsky, Edward A.G. Schuur
2016, Environmental Research Letters (11) 1-10
The permafrost component of the cryosphere is changing dramatically, but the permafrost region is not well monitored and the consequences of change are not well understood. Changing permafrost interacts with ecosystems and climate on various spatial and temporal scales. The feedbacks resulting from these interactions range from local impacts on...
Scripting MODFLOW model development using Python and FloPy
Mark Bakker, Vincent E. A. Post, Christian D. Langevin, Joseph D. Hughes, Jeremy T. White, Jeffrey Starn, Michael N. Fienen
2016, Groundwater (54) 733-739
Graphical user interfaces (GUIs) are commonly used to construct and postprocess numerical groundwater flow and transport models. Scripting model development with the programming language Python is presented here as an alternative approach. One advantage of Python is that there are many packages available to facilitate the model development process, including...
Simulation of groundwater storage changes in the eastern Pasco Basin, Washington
Charles E. Heywood, Sue C. Kahle, Theresa D. Olsen, James D. Patterson, Erick Burns
2016, Scientific Investigations Report 2016-5026
The Miocene Columbia River Basalt Group and younger sedimentary deposits of lacustrine, fluvial, eolian, and cataclysmic-flood origins compose the aquifer system of the Pasco Basin in eastern Washington. Irrigation return flow and canal leakage from the Columbia Basin Project have caused groundwater levels to rise substantially in some areas,...
Tracking millennial-scale Holocene glacial advance and retreat using osmium isotopes: Insights from the Greenland ice sheet
Alan D. Rooney, David Selby, Jeremy M. Llyod, David H. Roberts, Andreas Luckge, Bradley B. Sageman, Nancy G. Prouty
2016, Quaternary Science Reviews (138) 49-61
High-resolution Os isotope stratigraphy can aid in reconstructing Pleistocene ice sheet fluctuation and elucidating the role of local and regional weathering fluxes on the marine Os residence time. This paper presents new Os isotope data from ocean cores adjacent to the West Greenland ice sheet that have excellent chronological controls....
Design and testing of a process-based groundwater vulnerability assessment (P-GWAVA) system for predicting concentrations of agrichemicals in groundwater across the United States
Jack E Barbash, Frank D. Voss
2016, Scientific Investigations Report 2014-5189
Efforts to assess the likelihood of groundwater contamination from surface-derived compounds have spanned more than three decades. Relatively few of these assessments, however, have involved the use of process-based simulations of contaminant transport and fate in the subsurface, or compared the predictions from such models with measured data—especially over regional...
Nitrogen loads from selected rivers in the Long Island Sound Basin, 2005–13, Connecticut and Massachusetts
John R. Mullaney
2016, Open-File Report 2016-1007
Total nitrogen loads at 14 water-quality monitoring stations were calculated by using discrete measurements of total nitrogen and continuous streamflow data for the period 2005–13 (water years 2006–13). Total nitrogen loads were calculated by using the LOADEST computer program.Overall, for water years 2006–13, streamflow in Connecticut was generally above normal....
A Bayesian approach for temporally scaling climate for modeling ecological systems
Max Post van der Burg, Michael J. Anteau, Lisa A. McCauley, Mark T. Wiltermuth
2016, Ecology and Evolution (6) 2978-2987
With climate change becoming more of concern, many ecologists are including climate variables in their system and statistical models. The Standardized Precipitation Evapotranspiration Index (SPEI) is a drought index that has potential advantages in modeling ecological response variables, including a flexible computation of the index over different timescales. However, little...
The North American model and captive cervid facilities—What is the threat?
John F. Organ, Thomas A. Decker, Tanya M. Lama
2016, Wildlife Society Bulletin (40) 10-13
The North American Model of Wildlife Conservation represents the key principles that in combination resulted in a distinct form of wildlife conservation in the United States and Canada. How and to what extent captive cervid facilities comport with or conflict with these principles has implications for wildlife conservation. Greatest threats...
2016 one-year seismic hazard forecast for the Central and Eastern United States from induced and natural earthquakes
Mark D. Petersen, Charles S. Mueller, Morgan P. Moschetti, Susan M. Hoover, Andrea L. Llenos, William L. Ellsworth, Andrew J. Michael, Justin L. Rubinstein, Arthur F. McGarr, Kenneth S. Rukstales
2016, Open-File Report 2016-1035
The U.S. Geological Survey (USGS) has produced a 1-year seismic hazard forecast for 2016 for the Central and Eastern United States (CEUS) that includes contributions from both induced and natural earthquakes. The model assumes that earthquake rates calculated from several different time windows will remain relatively stationary and can be...
Landscape-scale habitat selection by fishers translocated to the Olympic Peninsula of Washington
Jeffrey C. Lewis, Kurt J. Jenkins, Patricia J. Happe, David J. Manson, Marc McCalmon
2016, Forest Ecology and Management (369) 170-183
The fisher was extirpated from much of the Pacific Northwestern United States during the mid- to late-1900s and is now proposed for federal listing as a threatened species in all or part of its west coast range. Following the translocation of 90 fishers from central British Columbia, Canada, to the...
Trophic magnification of organic chemicals: A global synthesis
David Walters, T.D. Jardine, Brian S. Cade, K.A. Kidd, D.C.G. Muir, Peter C. Leipzig-Scott
2016, Environmental Science & Technology (50) 4650-4658
Production of organic chemicals (OCs) is increasing exponentially, and some OCs biomagnify through food webs to potentially toxic levels. Biomagnification under field conditions is best described by trophic magnification factors (TMFs; per trophic level change in log-concentration of a chemical) which have been measured for more than two decades. Syntheses...
Evaluation of Caspian tern (Hydroprogne caspia) and snowy plover (Charadrius alexandrinus nivosus) nesting on modified islands at the Don Edwards San Francisco Bay National Wildlife Refuge, California—2015 Annual Report
C. Alex Hartman, Joshua T. Ackerman, Mark P. Herzog, Cheryl Strong, David Trachtenbarg, Kimberley A. Sawyer, Crystal A. Shore
2016, Open-File Report 2016-1049
Executive Summary In order to address the 2008/10 NOAA Fisheries Biological Opinion for operation of the Federal Columbia River Power System, the U.S. Army Corps of Engineers (USACE) and the Bureau of Reclamation (Reclamation) have developed and begun implementation of Caspian tern (Hydroprogne caspia) management plans. This implementation includes relocating...
Groundwater exchanges near a channelized versus unmodified stream mouth discharging to a subalpine lake
James Constantz, Ramon C. Naranjo, Richard G. Niswonger, Kip K. Allander, B. Neilson, Donald O. Rosenberry, David W. Smith, C. Rosecrans, David A. Stonestrom
2016, Water Resources Research (52) 2157-2177
The terminus of a stream flowing into a larger river, pond, lake, or reservoir is referred to as the stream-mouth reach or simply the stream mouth. The terminus is often characterized by rapidly changing thermal and hydraulic conditions that result in abrupt shifts in surface water/groundwater (sw/gw) exchange patterns, creating the potential for...
When environmentally persistent pathogens transform good habitat into ecological traps
Clint Leach, Colleen T. Webb, Paul C. Cross
2016, Royal Society Open Science (3) Article 160051
Habitat quality plays an important role in the dynamics and stability of wildlife metapopulations. However, the benefits of high-quality habitat may be modulated by the presence of an environmentally persistent pathogen. In some cases, the presence of environmental pathogen reservoirs on high-quality habitat may lead to the creation of ecological...
Variability of the internal tide on the southern Monterey Bay continental shelf and associated bottom boundary layer sediment transport
Kurt J. Rosenberger, Curt D. Storlazzi, Olivia Cheriton
2016, Continental Shelf Research (120) 68-81
A 6-month deployment of instrumentation from April to October 2012 in 90 m water depth near the outer edge of the mid-shelf mud belt in southern Monterey Bay, California, reveals the importance regional upwelling on water column density structure, potentially accounting for the majority of the variability in internal tidal energy...
Nest survival is influenced by parental behaviour and heterospecifics in a mixed-species colony
Brianne E. Brussee, Peter S. Coates, Roger L. Hothem, Kristy Howe, Michael L. Casazza, John M. Eadie
2016, Ibis (158) 315-326
Studies of avian nest success often focus on examining influences of variation in environmental and seasonal factors. However, in-depth evaluations can also incorporate variation in individual incubation behaviour to further advance our understanding of avian reproductive ecology. We examined these relationships in colonially nesting Black-crowned Night-Herons Nycticorax nycticorax using intensive video-monitoring methods...
Flood- and drought-related natural hazards activities of the U.S. Geological Survey in New England
Pamela J. Lombard
2016, Fact Sheet 2016-3008
The U.S. Geological Survey (USGS) has many ongoing and recent water-related natural hazard activities in New England that can be used to help mitigate the effects of natural hazards in cooperation with other agencies. The themes related to potential hazards and the tools and science to better understand and address...
Transportation and Hydrology Studies of the U.S. Geological Survey in New England
Pamela J. Lombard
2016, Fact Sheet 2016-3009
The U.S. Geological Survey (USGS) has a long history of working with the Federal Highway Administration (FHWA) and State transportation agencies to provide data and information to address various issues related to water resources and the Nation’s transportation infrastructure. These issues include the following: • Streamgaging data networks • Flow...
Climate change impacts on lake thermal dynamics and ecosystem vulnerabilities
G. B Sahoo, A. L Forrest, S. G ; Schladow, J. E Reuter, R. Coats, Michael D. Dettinger
2016, Limnology and Oceanography (61) 496-507
Using water column temperature records collected since 1968, we analyzed the impacts of climate change on thermal properties, stability intensity, length of stratification, and deep mixing dynamics of Lake Tahoe using a modified stability index (SI). This new SI is easier to produce and is a more informative measure of...
Geology and undiscovered resource assessment of the potash-bearing Central Asia Salt Basin, Turkmenistan, Uzbekistan, Tajikistan, and Afghanistan: Chapter AA in Global mineral resource assessment
Jeff Wynn, Greta J. Orris, Pamela Dunlap, Mark D. Cocker, James D. Bliss
2016, Scientific Investigations Report 2010-5090-AA
Undiscovered potash resources in the Central Asia Salt Basin (CASB) of Turkmenistan, Uzbekistan, Tajikistan, and Afghanistan were assessed as part of a global mineral resource assessment led by the U.S. Geological Survey. The term “potash” refers to potassium-bearing, water-soluble salts derived from evaporite basins, where seawater dried up and precipitated...
An interface for simulating radiative transfer in and around volcanic plumes with the Monte Carlo radiative transfer model McArtim
Christoph Kern
2016, Open-File Report 2016-1045
This report describes two software tools that, when used as front ends for the three-dimensional backward Monte Carlo atmospheric-radiative-transfer model (RTM) McArtim, facilitate the generation of lookup tables of volcanic-plume optical-transmittance characteristics in the ultraviolet/visible-spectral region. In particular, the differential optical depth and derivatives thereof (that is, weighting functions), with...
Integrating subsistence practice and species distribution modeling: assessing invasive elodea’s potential impact on Native Alaskan subsistence of Chinook salmon and whitefish
Matthew Luizza, Paul Evangelista, Catherine S. Jarnevich, Amanda M. West, Heather Stewart
2016, Environmental Management (58) 144-163
Alaska has one of the most rapidly changing climates on earth and is experiencing an accelerated rate of human disturbance, including resource extraction and transportation infrastructure development. Combined, these factors increase the state’s vulnerability to biological invasion, which can have acute negative impacts on ecological integrity and subsistence practices. Of...
A moving target—incorporating knowledge of the spatial ecology of fish into the assessment and management of freshwater fish populations
Steven J. Cooke, Eduardo G Martins, Daniel P Struthers, Lee F G Gutowsky, Michael H. Powers, Susan E. Doka, John M. Dettmers, David A Crook, Martyn C. Lucas, Christopher M. Holbrook, Charles C. Krueger
2016, Environmental Monitoring and Assessment (188)
Freshwater fish move vertically and horizontally through the aquatic landscape for a variety of reasons, such as to find and exploit patchy resources or to locate essential habitats (e.g., for spawning). Inherent challenges exist with the assessment of fish populations because they are moving targets. We submit that quantifying and...