On the existence of maximum likelihood estimates for presence-only data
Trevor J. Hefley, Mevin Hooten
2015, Methods in Ecology and Evolution (6) 648-655
Presence-only data can be used to determine resource selection and estimate a species’ distribution. Maximum likelihood is a common parameter estimation method used for species distribution models. Maximum likelihood estimates, however, do not always exist for a commonly used species distribution model – the Poisson point process. We...
A spatial individual-based model predicting a great impact of copious sugar sources and resting sites on survival of Anopheles gambiae and malaria parasite transmission
Lin Zhu, Whitney A. Qualls, John M Marshall, Kris L. Arheart, Donald L. DeAngelis, John W. McManus, Sekou F. Traore, Seydou Doumbia, Yosef Schlein, Gunter C. Muller, John C. Beier
2015, Malaria Journal (14)
BackgroundAgent-based modelling (ABM) has been used to simulate mosquito life cycles and to evaluate vector control applications. However, most models lack sugar-feeding and resting behaviours or are based on mathematical equations lacking individual level randomness and spatial components of mosquito life. Here, a spatial individual-based...
A 2-D process-based model for suspended sediment dynamics: A first step towards ecological modeling
F. M. Achete, M. van der Wegen, D. Roelvink, B. Jaffe
2015, Hydrology and Earth System Sciences (19) 2837-2857
In estuaries suspended sediment concentration (SSC) is one of the most important contributors to turbidity, which influences habitat conditions and ecological functions of the system. Sediment dynamics differs depending on sediment supply and hydrodynamic forcing conditions that vary over space and over time. A robust sediment transport model is a...
Life-history tradeoffs and reproductive cycles in Spotted Owls
Ricka E. Stoelting, R. J. Gutierrez, William L. Kendall, M. Zachariah Peery
2015, The Auk (132) 46-64
The study of tradeoffs among life-history traits has long been key to understanding the evolution of life-history strategies. However, more recently, evolutionary ecologists have realized that reproductive costs have the potential to influence population dynamics. Here, we tested for costs of reproduction in the California Spotted Owl (Strix occidentalis occidentalis), and...
Habitat use of non-native burbot in a western river
Zachary B. Klein, Michael C. Quist, Darren T. Rhea, Anna C. Senecal
2015, Hydrobiologia (757) 61-71
Burbot, Lota lota (Linnaeus), were illegally introduced into the Green River drainage, Wyoming in the 1990s. Burbot could potentially alter the food web in the Green River, thereby negatively influencing socially, economically, and ecologically important fish species. Therefore, managers of the Green River are interested in implementing a suppression program...
Distributional changes in the western Burrowing Owl (Athene cunicularia hypugaea) in North America from 1967 to 2008
Alberto Macias-Duarte, Courtney J. Conway
2015, Journal of Raptor Research (49) 75-83
The quantification of shifts in bird distributions in response to climate change provides an opportunity to gain a deeper understanding of the processes that influence species persistence. We used data from the North American Breeding Bird Survey (BBS) to document changes in the distributional limits of the western Burrowing Owl...
Breeding habitat associations and predicted distribution of an obligate tundra-breeding bird, Smith's Longspur
Teri C. Wild, Steven J. Kendall, Nikki Guldager, Abby N. Powell
2015, The Condor (117) 3-17
Smith's Longspur (Calcarius pictus) is a species of conservation concern which breeds in Arctic habitats that are expected to be especially vulnerable to climate change. We used bird presence and habitat data from point-transect surveys conducted at 12 sites across the Brooks Range, Alaska, 2003–2009, to identify breeding areas, describe...
The effects of flow and stream characteristics on the variation in freshwater mussel growth in a Southeast US river basin
Justin C. Dycus, Jason M. Wisniewski, James T. Peterson
2015, Freshwater Biology (60) 395-409
Summary The evaluation of the age and growth of animal populations is essential for understanding and predicting how populations will respond to changes in environmental conditions and anthropogenic stressors. We used a novel, von Bertalanffy hierarchical modelling approach to quantify relationships between the growth of three freshwater mussel...
Evaluating multi-level models to test occupancy state responses of Plethodontid salamanders
Andrew J. Kroll, Tiffany S. Garcia, Jay E. Jones, Katie M. Dugger, Blake Murden, Josh Johnson, Summer Peerman, Ben Brintz, Michael Rochelle
2015, PLoS ONE (10)
Plethodontid salamanders are diverse and widely distributed taxa and play critical roles in ecosystem processes. Due to salamander use of structurally complex habitats, and because only a portion of a population is available for sampling, evaluation of sampling designs and estimators is critical to provide strong inference about Plethodontid ecology...
Climate-smart management of biodiversity
Christopher P. Nadeau, Angela K. Fuller, Daniel L. Rosenblatt
2015, Ecosphere (6)
Determining where biodiversity is likely to be most vulnerable to climate change and methods to reduce that vulnerability are necessary first steps to incorporate climate change into biodiversity management plans. Here, we use a spatial climate change vulnerability assessment to (1) map the potential vulnerability of terrestrial biodiversity to climate...
Context of ancient aqueous environments on Mars from in situ geologic mapping at Endeavour Crater
L.S. Crumpler, R. E. Arvidson, J. Bell, B. C. Clark, B. A. Cohen, W. H. Farrand, Ralf Gellert, M. Golombek, J. A. Grant, E. Guinness, Kenneth E. Herkenhoff, J. R. Johnson, B. Jolliff, D. W. Ming, D. W. Mittlefehldt, T. Parker, J. W. Rice Jr., S. W. Squyres, R. Sullivan, A. S. Yen
2015, Journal of Geophysical Research E: Planets (120) 538-569
Using the Mars Exploration Rover Opportunity, we have compiled one of the first field geologic maps on Mars while traversing the Noachian terrain along the rim of the 22 km diameter Endeavour Crater (Latitude −2°16′33″, Longitude −5°10′51″). In situ mapping of the petrographic, elemental, structural, and stratigraphic characteristics of outcrops and rocks...
Arctic biodiversity: Increasing richness accompanies shrinking refugia for a cold-associated tundra fauna
Andrew G. Hope, Eric Waltari, Jason L. Malaney, David C. Payer, J.A. Cook, Sandra L. Talbot
2015, Ecosphere (6) 1-67
As ancestral biodiversity responded dynamically to late-Quaternary climate changes, so are extant organisms responding to the warming trajectory of the Anthropocene. Ecological predictive modeling, statistical hypothesis tests, and genetic signatures of demographic change can provide a powerful integrated toolset for investigating these biodiversity responses to climate change, and relative resiliency...
A semi-automated tool for reducing the creation of false closed depressions from a filled LIDAR-derived digital elevation model
John Wall, Daniel H. Doctor, Silvia Terziotti
2015, Conference Paper, National Cave and Karst Research Institute Symposium 5, Proceedings of the 14th Multidisciplinary Conference on Sinkholes and the Engineering and Environmental Impacts of Karst
Closed depressions on the land surface can be identified by ‘filling’ a digital elevation model (DEM) and subtracting the filled model from the original DEM. However, automated methods suffer from artificial ‘dams’ where surface streams cross under bridges and through culverts. Removal of these false depressions from an elevation model...
A guide to Bayesian model selection for ecologists
Mevin Hooten, N.T. Hobbs
2015, Ecological Monographs (85) 3-28
The steady upward trend in the use of model selection and Bayesian methods in ecological research has made it clear that both approaches to inference are important for modern analysis of models and data. However, in teaching Bayesian methods and in working with our research colleagues, we have noticed a...
Forecasting the effects of fertility control on overabundant ungulates: White-tailed deer in the National Capital Region
Ann M. Raiho, Mevin Hooten, Scott Bates, N. Thompson Hobbs
2015, PLoS ONE (10)
Overabundant populations of ungulates have caused environmental degradation and loss of biological diversity in ecosystems throughout the world. Culling or regulated harvest is often used to control overabundant species. These methods are difficult to implement in national parks, other types of conservation reserves, or in residential areas where public hunting...
An evaluation of the relations between flow regime components, stream characteristics, species traits and meta-demographic rates of warmwater stream fishes: Implications for aquatic resource management
James T. Peterson, C.P. Shea
2015, River Research and Applications (31) 1227-1241
Fishery biologists are increasingly recognizing the importance of considering the dynamic nature of streams when developing streamflow policies. Such approaches require information on how flow regimes influence the physical environment and how those factors, in turn, affect species-specific demographic rates. A more cost-effective alternative could be the use of dynamic...
Patterns of fish assemblage structure and habitat use among main- and side-channel environments in the lower Kootenai River, Idaho
Carson J. Watkins, Bryan S. Stevens, Michael C. Quist, Bradley B. Shepard, Susan C. Ireland
2015, Transactions of the American Fisheries Society (144) 1340-1355
The lower Kootenai River, Idaho, was sampled during the summers of 2012 and 2013 to evaluate its fish assemblage structure at seven sites within main- and side-channel habitats where large-scale habitat rehabilitation was undertaken. Understanding the current patterns of fish assemblage structure and their relationships with habitat is important for...
The effects of harvest regulations on behaviors of duck hunters
Matthew T. Haugen, Larkin A. Powell, Mark P. Vrtiska, Kevin L. Pope
2015, Human Dimensions of Wildlife: An International Journal (20) 15-29
Uncertainty exists as to how duck harvest regulations influence waterfowl hunter behavior. We used the U.S. Fish and Wildlife Service’s Parts Collection Survey to examine how harvest regulations affected behaviors of Central Flyway duck hunters. We stratified hunters into ranked groups based on seasonal harvest and identified three periods (1975–1984,...
Developing in situ non-destructive estimates of crop biomass to address issues of scale in remote sensing
Michael T. Marshall, Prasad S. Thenkabail
2015, Remote Sensing (7) 808-835
Ground-based estimates of aboveground wet (fresh) biomass (AWB) are an important input for crop growth models. In this study, we developed empirical equations of AWB for rice, maize, cotton, and alfalfa, by combining several in situ non-spectral and spectral predictors. The non-spectral predictors included: crop height (H), fraction of absorbed...
Effects of gill-net trauma, barotrauma, and deep release on postrelease mortality of Lake Trout
Elizabeth L. Ng, Jim P. Fredericks, Michael C. Quist
2015, Journal of Fish and Wildlife Management (6) 265-277
Unaccounted postrelease mortality violates assumptions of many fisheries studies, thereby biasing parameter estimates and reducing efficiency. We evaluated effects of gill-net trauma, barotrauma, and deep-release treatment on postrelease mortality of lake trout Salvelinus namaycush. Lake trout were captured at depths up to 65 m with gill nets in Priest Lake, Idaho,...
Population characteristics of channel catfish near the northern edge of their distribution: implications for management
K. P. Carter-Lynn, Michael C. Quist
2015, Fisheries Management and Ecology (22) 530-538
Channel catfish, Ictalurus punctatus (Rafinesque), populations in six lakes in northern Idaho, USA, were sampled to describe their population characteristics. During the summers of 2011 and 2012, 4864 channel catfish were sampled. Channel catfish populations had low to moderate catch rates, and length structure was dominated by fish <400 mm. Channel catfish were...
Relations between soil hydraulic properties and burn severity
John A. Moody, Brian A. Ebel, Petter Nyman, Deborah A. Martin, Cathelijne R. Stoof, Randy McKinley
2015, International Journal of Wildland Fire (25) 279-293
Wildfire can affect soil hydraulic properties, often resulting in reduced infiltration. The magnitude of change in infiltration varies depending on the burn severity. Quantitative approaches to link burn severity with changes in infiltration are lacking. This study uses controlled laboratory measurements to determine relations between a remotely sensed burn severity...
Predicting effects of environmental change on a migratory herbivore
R. A. Stillman, K. A. Wood, Whelan Gilkerson, E. Elkinton, J. M. Black, David H. Ward, M. Petrie
2015, Ecosphere (6) 1-19
Changes in climate, food abundance and disturbance from humans threaten the ability of species to successfully use stopover sites and migrate between non‐breeding and breeding areas. To devise successful conservation strategies for migratory species we need to be able to predict how such changes will affect both individuals and populations....
GOES-derived fog and low cloud indices for coastal north and central California ecological analyses
Alicia A. Torregrosa, Cindy Combs, Jeff Peters
2015, Earth and Space Science (3) 46-67
Fog and low cloud cover (FLCC) changes the water, energy, and nutrient flux of coastal ecosystems. Easy-to-use FLCC data are needed to quantify the impacts of FLC on ecosystem dynamics during hot, dry Mediterranean climate summers. FLCC indices were generated from 26,000 hourly night and day FLCC maps derived from...
Mercury concentrations of bluegill (Lepomis macrochirus) vary by sex
Charles P. Madenjian, James T. Francis, Jeffrey J. Braunscheidel, Joseph R. Bohr, Matthew J. Geiger, G. Mark Knottnerus
2015, Environments (2) 546-564
Patterns in relative differences in contaminant concentrations between the sexes across many species of fish may reveal clues for important behavioral and physiological differences between the sexes, and may also be useful in developing fish consumption advisories and efficient designs for programs meant to monitor contaminant levels in fish. We...