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Neogene (Miocene–Pliocene) sedimentary rocks of the northeastern Sierra Nevada were deposited in small basins that formed in response to volcanic and tectonic activity along the eastern margin of the Sierra. These strata record an early phase (ca. 11–10 Ma) of extension and rapid sedimentation of boulder conglomerates and debrites deposited...

Invasive species affect the structure and processes of ecosystems they invade. Invasive species have been particularly relevant to the Laurentian Great Lakes, where they have played a part in both historical and recent changes to Great Lakes food webs and the fisheries supported therein. There is increased interest in understanding...

1. A Bayesian analysis of site-occupancy data containing covariates of species occurrence and species detection probabilities is usually completed using Markov chain Monte Carlo methods in conjunction with software programs that can implement those methods for any statistical model, not just site-occupancy models. Although these software programs are quite flexible, considerable...

Porphyry-copper ore systems, the source of much of the world's copper and molybdenum, form when metal-bearing fluids are expelled from shallow, degassing magmas. On page 1613 of this issue, Weis et al. (1) demonstrate that self-organizing processes focus metal deposition. Specifically, their simulation studies indicate that ores develop as consequences...

Watersheds draining the Arctic Coastal Plain (ACP) of Alaska are dominated by permafrost and snowmelt runoff that create abundant surface storage in the form of lakes, wetlands, and beaded streams. These surface water elements compose complex drainage networks that affect aquatic ecosystem connectivity and hydrologic behavior. The 4676 km2 Fish...

We review the conservation issues facing migratory shorebird populations that breed in temperate regions and use wetlands in the non-breeding season. Shorebirds are excellent model organisms for understanding ecological, behavioural and evolutionary processes and are often used as indicators of wetland health. A global team of experienced shorebird researchers identified...

Results are presented of a detailed study into the vadose zone and shallow water table hydrodynamics of a field site in Shropshire, UK. A conceptual model is developed and tested using a range of numerical models, including a modified soil moisture balance model (SMBM) for estimating groundwater recharge in the...

The SLEUTH urban growth model is applied to a binational dryland watershed to envision and evaluate plausible future scenarios of land use change into the year 2050. Our objective was to create a suite of geospatial footprints portraying potential land use change that can be used to aid binational decision-makers...

We modeled the hydrology of basins draining into the northern portion of the San Francisco Bay Estuary (North San Pablo Bay) using a regional water balance model (Basin Characterization Model; BCM) to estimate potential effects of climate change at the watershed scale. The BCM calculates water balance components, including runoff,...

Fish bioenergetics models based on natural prey items have been widely used to address research and management questions. However, few attempts have been made to evaluate and apply bioenergetics models to hatchery-reared fish receiving commercial feeds that contain substantially higher energy densities than natural prey. In this study, we evaluated...

Commercial fisheries are commonly used to manage nuisance fishes in freshwater systems, but such efforts are often unsuccessful. Strategies for successfully controlling a nuisance population of common carp Cyprinus carpio by pulsed commercial harvest were evaluated with a combination of (1) field sampling, (2) population estimation and CPUE indexing, and (3) simulation...

Prevalence of the non-native swim bladder nematode Anguillicoloides crassus has recently increased in American eels from estuaries of the North American Atlantic coast, but little is known about parasite prevalence or conditions of previous infection in upstream migrant eels within upper watersheds. This study is the first to confirm presence of A....

One of the pervasive challenges in landscape genetics is detecting gene flow patterns within continuous populations of highly mobile wildlife. Understanding population genetic structure within a continuous population can give insights into social structure, movement across the landscape and contact between populations, which influence ecological interactions, reproductive dynamics or pathogen...

The Colorado River and its riverine resources have undergone profound changes since completion of Glen Canyon Dam in 1963, as every river runner with any history in Grand Canyon will attest. Long-term monitoring data are difficult to obtain for high-value resource areas (Webb et al. 2009), particularly in remote parts...

Satellite-based remote monitoring programs of regional lake water quality largely have relied on Landsat Thematic Mapper (TM) owing to its long image archive, moderate spatial resolution (30 m), and wide sensitivity in the visible portion of the electromagnetic spectrum, despite some notable limitations such as temporal resolution (i.e., 16 days), data pre-processing...

Among crayfish, primary burrowing species are the least understood ecologically. Many primary burrowing crayfish inhabit floodplains where forested landscapes have been fragmented by agricultural, industrial, or residential uses. In this study, site occupancy rates (ψ) were modeled for two primary burrowing crayfish, Fallicambarus fodiens (Cottle, 1863) and Cambarus thomai Jezerinac,...

Volunteer-based audio surveys are used to document long-term trends in anuran community composition and abundance. Current sampling protocols, however, are not region- or species-specific and may not detect relatively rare or audibly cryptic species. We used automated audio recording devices to record calling anurans during 2006–2009 at wetlands in Maine,...

Previous Mottled Duck (Anas fulvigula) studies suggested that high female breeding season survival may be caused by low nesting effort, but few breeding season estimates of survival associated with nesting effort exist on the western Gulf Coast. Here, breeding season survival (N = 40) and breeding incidence (N = 39)...

Intense winter storms in the San Francisco Bay area (SFBA) of California, USA often trigger shallow landslides. Some of these landslides mobilize into potentially hazardous debris flows. A growing body of research indicates that rainfall intensity-duration thresholds are insufficient for accurate prediction of landslide occurrence. In response, we have begun...

The moment magnitude (Mw) 7.0 12 January 2010 Haiti earthquake is the first major earthquake for which a large-footprint LiDAR (light detection and ranging) survey was acquired within several weeks of the event. Here, we describe the use of virtual reality data visualization to analyze massive amounts (67 GB on...

Observations related to tsunami catalogs are reviewed and described in a phenomenological framework. An examination of scaling relationships between earthquake size (as expressed by scalar seismic moment and mean slip) and tsunami size (as expressed by mean and maximum local run-up and maximum far-field amplitude) indicates that scaling is significant...

1. Stream salamanders and fish often co-occur even though fish prey on and outcompete salamanders. However, the mechanisms that allow palatable salamanders to coexist with fish are unknown. 2. We tested mechanisms in the field that promote coexistence between Idaho giant salamanders (Dicamptodon aterrimus) and stream salmonid fishes in headwater streams. Previous research...

Aircraft and pavement deicing formulations and other potential freezing point depressants were tested for biochemical oxygen demand (BOD) and chemical oxygen demand (COD). Propylene glycol-based aircraft deicers exhibited greater BOD5 than ethylene glycol-based aircraft deicers, and ethylene glycol-based products had lower degradation rates than propylene glycol-based products. Sodium formate pavement deicers...

The analysis of long-term monitoring data is increasingly important; not only for the discovery and documentation of changes in environmental systems, but also as an enterprise whose fruits validate the allocation of effort and scarce funds to monitoring. In simple terms, we may distinguish between the detection of change in...

A shoreline change model incorporating both long- and short-term evolution is integrated into a data assimilation framework that uses sparse observations to generate an updated forecast of shoreline position and to estimate unobserved geophysical variables and model parameters. Application of the assimilation algorithm provides quantitative statistical estimates of combined model-data...