Climate change scenarios for air and water temperatures in the upper San Francisco Estuary: Implications for thermal regimes and Delta Smelt
Brock Huntsman, Larry R. Brown, Marissa L. Wulff, Noah Knowles, R. Wayne Wagner, Frederick V. Feyrer
2024, San Francisco Estuary and Watershed Science (22)
Climate projections and their effects in the San Francisco Estuary have been evaluated as part of the US Geological Survey’s CASCaDE2 project. Understanding the ecological effects of climate change can help manage and maintain the ecological health and productivity of the San...
Taking heat (downstream): Simulating groundwater and thermal equilibrium controls on annual paired air–water temperature signal transport in headwater streams
Zachary Johnson, Martin Briggs, Craig D. Snyder, Brittany G. Johnson, Nathaniel Hitt
2024, Journal of Hydrology (638)
Headwater stream temperature often exhibits spatial variation at the kilometer-scale, but the relative importance of the underlying hydrogeological processes and riverine perturbations remains poorly understood. In this study, we investigated the relative importance of groundwater (GW) and other processes on downstream annual stream temperature signal characteristics using deterministic heat budget...
Rainfall intensification amplifies exposure of American Southwest to conditions that trigger postfire debris flows
Matthew A. Thomas, Allison C. Michaelis, Nina S. Oakley, Jason W. Kean, Victor A. Gensini, Walker S. Ashley
2024, npj Natural Hazards (1)
Short-duration, high-intensity rainfall can initiate deadly and destructive debris flows after wildfire. Methods to estimate the conditions that can trigger debris flows exist and guidance to determine how often those thresholds will be exceeded under the present climate are available. However, the limited spatiotemporal resolution of climate models has hampered...
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell-Sala, Brian Williams, Jane E. Loveland, Maite De María, Matthew S. Adams, Gabriela Balderrama-Gutierrez, Amit K. Behera, Jose M. Gonzalez Martinez, Toby Hunt, Julien Lagarde, Cindy E. Liang, Haoran Li, Marcus Jerryd Meade, David A. Moraga Amador, Andrey D. Prjibelski, Inanc Birol, Hamed Bostan, Ashley M. Brooks, Muhammed Hasan Çelik, Ying Chen, Mei R.M. Du, Colette Felton, Jonathan Göke, Saber Hafezqorani, Ralf Herwig, Hideya Kawaji, Joseph Lee, Jian-Liang Li, Matthias Lienhard, Alla Mikheenko, Dennis Mulligan, Ka Ming Nip, Mihaela Pertea, Matthew E. Ritchie, Andre D. Sim, Alison D. Tang, Yuk Kei Wan, Changqing Wang, Brandon Y. Wong, Chen Yang, If Barnes, Andrew E. Berry, Salvador Capella-Gutierrez, Alyssa Cousineau, Namrita Dhillon, Jose M. Fernandez-Gonzalez, Luis Ferrández-Peral, Natàlia Garcia-Reyero, Stefan Götz, Carles Hernández-Ferrer, Liudmyla Kondratova, Tianyuan Liu, Alessandra Martinez-Martin, Carlos Menor, Jorge Mestre-Tomás, Jonathan M. Mudge, Nedka G. Panayotova, Alejandro Paniagua, Dmitry Repchevsky, Xingjie Ren, Eric Rouchka, Brandon Saint-John, Enrique Sapena, Leon Sheynkman, Melissa Laird Smith, Marie-Marthe Suner, Hazuki Takahashi, Ingrid A. Youngworth, Piero Carninci, Nancy D. Denslow, Roderic Guigó, Maggie Hunter, Rene Maehr, Yin Shen, Hagen U. Tilgner, Barbara J. Wold, Christopher Vollmers, Adam Frankish, Kin Fai Au, Gloria M. Sheynkman, Ali Mortazavi, Ana Conesa, Angela N. Brooks
2024, Nature Methods (21) 1349-1363
The Long-read RNA-Seq Genome Annotation Assessment Project Consortium was formed to evaluate the effectiveness of long-read approaches for transcriptome analysis. Using different protocols and sequencing platforms, the consortium generated over 427 million long-read sequences from complementary DNA and direct RNA datasets, encompassing human, mouse and manatee species. Developers utilized these...
Earthquake scenario development in conjunction with the 2023 USGS National Seismic Hazard Model
Robert Edward Chase, Kishor S. Jaiswal, Mark D. Petersen
2024, Earthquake Spectra
We present earthquake scenarios developed to accompany the release of the 2023 update to the US Geological Survey National Seismic Hazard Model (NSHM). Scenarios can serve a range of local and regional needs, from developing proactive-targeted mitigation strategies for minimizing impending risk to aiding emergency management planning. These deterministic scenarios...
Bornean Wren-Babbler Ptilocichla leucogrammica
Ryan C. Burner, Guy M. Kirwan, Peter Pyle, Nigel J. Collar, Craig Robson
2024, Book chapter, Birds of the World
No abstract available....
Bare-headed Laughingthrush Melanocichla calva
Ryan C. Burner, Guy M. Kirwan, Peter Pyle, Nigel J. Collar, Craig Robson
2024, Book chapter, Birds of the world
No abstract available....
Subducting plate structure and megathrust morphology from deep seismic imaging linked to earthquake rupture segmentation at Cascadia
Suzanne M. Carbotte, Brian Boston, Shuoshuo Han, Brandon Shuck, Jeffrey Beeson, Juan Pablo Canales, Harold Tobin, Nathaniel C. Miller, Mladen Nedimovic, Anne M. Tréhu, Michelle Lee, Madelaine Lucas, Hanchao Jian, Danqi Jiang, Liam Moser, Christine S. Anderson, Darren Judd, Jaime Fernandez, Chuck Campbell, Antara Goswami, Rajendra Gahlawat
2024, ScienceAdvances (10)
The origin of rupture segmentation along subduction zone megathrusts and linkages to the structural evolution of the subduction zone are poorly understood. Here, regional-scale seismic imaging of the Cascadia margin is used to characterize the megathrust spanning ~900 km from Vancouver Island to the California border, across the seismogenic zone...
Hirsutonosema embarrassi n. gen. n. sp. (Phylum Microsporidia) in the Ovary of Mucket (Actinonaias ligamentina), Plain Pocketbook (Lampsilis cardium), and Fatmucket (Lampsilis siliquoidea) (Unionidae) from the Embarrass River, Wisconsin, USA
Susan Knowles, Eric M. Leis, J.C. Richard, I.F. Standish, Jamie Bojko, Jesse Weinzinger, Diane L. Waller
2024, Parasitologia (4) 184-198
During an epidemiological survey following a mortality event of freshwater mussels in 2018 in the Embarrass River, Wisconsin, USA, we identified a novel microsporidian parasite in the ovaries of mucket (Actinonaias ligamentina), plain pocketbook (Lampsilis cardium), and fatmucket (Lampsilis siliquoidea) (Unionidae). Histopathology showed round-to-oval microsporidian spores...
The 3D National Topography Model Call for Action—Part 1. The 3D Hydrography Program
Rebecca Anderson, Vicki Lukas, Stephen S. Aichele
2024, Circular 1519
The U.S. Geological Survey is initiating the 3D Hydrography Program (3DHP), the first systematic remapping of the Nation’s surface waters since the original 1:24,000-scale topographic mapping program was active from 1947 to 1992. Building on decades of experience maintaining the National Hydrography Dataset (NHD), the Watershed Boundary Dataset (WBD), and...
The 3D Elevation Program—Supporting Ohio's economy
Charles E. Hickman
2024, Fact Sheet 2024-3017
IntroductionHigh-quality elevation data are proving to be a resource of great economic value in dealing with many important issues in Ohio. Current and accurate high-resolution elevation data support flood risk management, water quantity and quality assessment, precision farming, conservation planning, impervious-surface modeling, forest and other natural resources management, abandoned mine...
Marine heatwaves affect breeding, diet and population size but not body condition of a range-edge little penguin colony
B.L. Cannell, William L. Kendall, J.A. Tyne, M. Bunce, Y. Hetzel, D. Murray, B. Radford
2024, Marine Ecology Progress Series (737) 193-213
Significant marine heatwaves (MHWs) developed along the Western Australian coast in 1999 and 2011. Despite ecosystem losses and the southwards occurrence of many tropical fish species during and after the extreme MHW in 2011, there have been few studies on the effects of this MHW on seabirds, and no biological...
Mechanisms by which marine heatwaves impact seabirds
John F. Piatt, Mayumi L. Arimitsu, Sarah Ann Thompson, Rob Suryan, Rory Wilson, Kyle Elliott, W.J. Sydeman
2024, MEPS (737) 1-8
Marine heatwaves (MHWs) are characterized by periods of extreme warming of local to basin-scale marine habitat. Effects of MHWs on some seabirds (e.g. mass die-offs) are well documented, but mechanisms by which seabirds respond to MHWs remain poorly understood. Following from a symposium at the 3rd World Seabird Conference, this Theme...
Turning setbacks into stepping-stones for growth in conservation paleobiology
G. Lynn Wingard, Chris L. Schneider, Gregory P. Dietl, Damien A. Fordham
2024, Frontiers in Ecology and Evolution (12)
Conservation paleobiology is a cross-disciplinary field that utilizes the geohistorical record of past life on Earth to inform present-day decisions in conservation and restoration and assist in planning for future natural resource management. However, information on how past ecosystems and species responded to environmental change over decadal to millennial...
Fish invasion of prairie pothole wetlands reduces amphipod abundance, a key vertebrate forage
Jake D. Carleen, Danelle M. Larson, Michael J. Anteau, Megan J. Fitzpatrick, Andrew W. Hafs, Carl W. Isaacson, Breanna R. Keith
2024, Wetlands (44)
Fishes have spread into previously fishless wetlands, likely affecting other species. In the Prairie Pothole Region of North America, the invasion of fish into wetlands is facilitated by interactions of altered land use, climate, and hydrology. We aimed to understand the effects of fishes on amphipods,...
Assessment of undiscovered conventional oil and gas resources in postsalt reservoirs of the West-Central Coastal Province of Africa, 2022
Christopher J. Schenk, Tracey J. Mercier, Cheryl A. Woodall, Phuong A. Le, Andrea D. Cicero, Ronald M. Drake II, Geoffrey S. Ellis, Thomas M. Finn, Michael H. Gardner, Sarah E. Gelman, Jane S. Hearon, Benjamin G. Johnson, Jenny H. Lagesse, Heidi M. Leathers-Miller, Kristen R. Marra, Kira K. Timm, Scott S. Young
2024, Fact Sheet 2024-3011
Using a geology-based assessment methodology, the U.S. Geological Survey estimated undiscovered, technically recoverable mean conventional resources of 10.5 billion barrels of oil and 47.4 trillion cubic feet of gas in postsalt reservoirs within the West-Central Coastal Province of Africa....
Decomposition of physical processes controlling EASM precipitation changes during the mid-Piacenzian: New insights into data–model integration
Yong Sun, Haibin Wu, Lixin Chen, Christian Stepanek, Yan Zhao, Ning Tan, Baohuang Su, Xiayu Yuan, Wenchao Zhang, Bo Liu, Stephen Hunter, Alan M Haywood, Ayako Abe-Ouchi, Bette Otto-Bliesner, Camille Contoux, Daniel J. Lunt, Aisling M Dolan, Deepak Chandan, Gerrit Lohmann, Harry J. Dowsett, Julia C. Tindall, Michiel Baatsen, W. Richard Peltier, Qiang Li, Ran Feng, Ulrich Salzmann, Wing-Le Chan, Zhongshi Zhang, Charles J. R. Williams, Gilles Ramstein
2024, npj Climate and Atmospheric Science (7)
The mid-Piacenzian warm period (MPWP, ~3.264–3.025 Ma) has gained widespread interest due to its partial analogy with future climate. However, quantitative data–model comparison of East Asian Summer Monsoon (EASM) precipitation during the MPWP is relatively rare, especially due to problems in decoding the imprint of physical processes to climate signals in...
Origins and nature of large explosive eruptions in the lower East Rift Zone of Kīlauea volcano, Hawaii: Insights from ash characterization and geochemistry
Richard W. Hazlett, Johanne Schmith, Allan Lerner, Drew T. Downs, Erin P. Fitch, Carolyn E. Parcheta, Cheryl A. Gansecki, Sarah Spaulding
2024, Journal of Volcanology and Geothermal Research (452)
Several powerful explosive eruptions have taken place in the populated lower East Rift Zone of Kīlauea within the past ∼750 years. These have created distinctive landforms, including a tephra rim enclosing Puʻulena Crater immediately south of the Puna Geothermal Venture power station, a tuff cone at Kapoho Crater near the eastern...
Climate-influenced phenology of larval fish transport in a large lake
Spencer T. Gardner, Mark D. Rowe, Pengfei Xue, Xing Zhou, Peter Alsip, David Bunnell, Paris D. Collingsworth, Edward S. Rutherford, Tomas O. Hook
2024, Limnology and Oceanography Letters
Elucidating physical transport phenologies in large lakes can aid understanding of larval recruitment dynamics. Here, we integrate a series of climate, hydrodynamic, biogeochemical, and Lagrangian particle dispersion models to: (1) simulate hatch and transport of fish larvae throughout an illustrative large lake, (2) evaluate patterns of historic and potential future...
Bird community response to one decade of riparian restoration along the Colorado River delta in Mexico
Eduardo Gonzalez-Sargas, Timothy D Meehan, Osvel Hinojosa-Huerta, Steffany Villagomez-Palma, Alejandra Calvo-Fonseca, Christopher Dodge, Martha Gomez-Sapiens, Patrick B. Shafroth
2024, Ecological Engineering (205)
We assessed the response of breeding birds to one decade of riparian restoration in the Colorado River delta including active vegetation management since 2010 and various environmental water deliveries since 2014. Bird surveys were conducted from 2002 to 2021...
Structure and morphology of chars and activated carbons obtained from thermal treatment of coal and biomass origin materials, including their wastes: Results from the ICCP Microscopy of Carbon Materials Working Group
G. Predeanu, M. Wojtaszek-Kalaitzidi, I. Suárez Ruiz, M.N. Bălănescu, A. Gómez Borrego, M.D. Ghiran, Paul C. Hackley, S. Kalaitzidis, J. Kus, M. Mastalerz, M. Misz-Kennan, S. Pusz, S. Rodrigues, G. Siavalas, A. K. Varma, A. Zdravkov, D. Životić
2024, International Journal of Coal Geology (288)
This paper describes the evaluation of petrographic textures in char and activated carbon derived from coal, coal by-products and biomass, formed during carbonization and activation processes. This work represents the results of interlaboratory exercises from 2016 to 2022 of the Microscopy of Carbon Materials Working Group in Commission III...
Change in growth and prey utilization for a native salmonid following invasion by an omnivorous minnow in an oligotrophic reservoir
Rachelle Carina Johnson, Tessa Julianne Code, Karl D. Stenberg, Jonathan H Mclean, Benjamin Lorenz Jensen, Marshal Hoy, David Beauchamp
2024, Hydrobiologia (851) 3767-3785
Aquatic invasive species can affect food web structure, native fish growth, and production, depending on the traits of the invasive species and the pre-invasion conditions of the ecosystem. Thermal tolerances and behavioral traits can further influence differential exploitation of resources shared between native and invasive species. An unauthorized introduction of...
Projected sea-level rise and high tide flooding at Timucuan Ecological and Historic Preserve, Florida
Hana R. Thurman, Nicholas M. Enwright, Michael J. Osland, Davina L. Passeri, Richard H. Day, Bethanie M. Simons
2024, Fact Sheet 2024-3008
IntroductionNational parks and preserves in the South Atlantic-Gulf Region contain valuable coastal habitats such as tidal wetlands and mangrove forests, as well as irreplaceable historic buildings and archeological sites located in low-lying areas. These natural and cultural resources are vulnerable to accelerated sea-level rise and escalating high tide flooding events....
Balancing natural resource use and extraction of uranium and other elements in the Grand Canyon region
Katherine Walton-Day, Benjamin J. Siebers, Jo Ellen Hinck, Kate M. Campbell, Marie Noële Croteau
2024, Fact Sheet 2024-3003
The Grand Canyon region is an important natural, cultural, and archeological resource known worldwide. The region contains uranium resources that could be used to generate electricity. The U.S. Geological Survey (USGS), in cooperation with the National Park Service, Bureau of Land Management, and U.S. Department of Agriculture Forest Service, is...
Development of high surface area organosilicate nanoparticulate thin films for use in sensing hydrophobic compounds in sediment and water
Sangho Bok, Venumadhav R. Korampally, Jacob K. Stanley, Keshab Gangopadhyay, Shubhra Gangopadhyay, Jeffery Steevens
2024, Biosensors (14)
The scope of this study was to apply advances in materials science, specifically the use of organosilicate nanoparticles as a high surface area platform for passive sampling of chemicals or pre-concentration for active sensing in multiple-phase complex environmental media. We have developed a novel nanoporous organosilicate (NPO) film as an...
