occupancyTuts: Occupancy modelling tutorials with RPresence
Therese M. Donovan, James E. Hines, Darryl MacKenzie
2024, Methods in Ecology and Evolution (15) 477-483
1. The occupancy modelling framework offers tremendous flexibility in estimating species abundance and distribution patterns while accounting for imperfect detection, and has seen rapid growth and adoption since its introduction at the beginning of the century.2. At the same time, in an era of big data, there are increasing demands...
Determining the distribution, status, and linkages of Agassiz's desert tortoise populations in the uplands surrounding the Coachella Valley
Michele R. Puffer, Jeffrey E. Lovich, Kristy L. Cummings
2024, Report, 2023 CVCC Annual Report
In support of the goals of the Coachella Valley Conservation Commission and the Bureau of Land Management, we performed surveys to determine the status, distribution, demographics, and possible genetic linkages of Agassiz’s desert tortoise (Gopherus agassizii) populations within the Coachella Valley Multiple Species Habitat Conservation Plan (CVMSHCP) area during a...
Implementation of the CREED approach for environmental assessments
Carolina Di Paolo, Irene Bramke, Jenny Stauber, Caroline Whalley, Ryan R. Otter, Yves Verhaegen, Lisa H. Nowell, Adam C. Ryan
2024, Integrated Environmental Assessment and Management (20) 1019-1034
Environmental exposure data are a key component of chemical and ecological assessments, supporting and guiding environmental management decisions and regulations. Measures taken to protect the environment based on exposure data can have social and economic implications. Flawed information may lead to measures being taken...
Analysis adapted from text mining quantitively reveals abrupt and gradual plant-community transitions after fire in sagebrush steppe
Cara Applestein, Christopher R. Anthony, Matthew J. Germino
2024, Landscape Ecology (39)
ContextPlant communities vary both abruptly and gradually over time but differentiating between types of change can be difficult with existing classification and ordination methods. Structural topic modeling (STRUTMO), a text mining analysis, offers a flexible methodology for analyzing both types of temporal trends.ObjectivesOur objectives were to...
Characterizing vegetation and return periods in avalanche paths using lidar and aerial imagery
Erich H. Peitzsch, Chelsea Martin-Mikle, Jordy Hendrikx, Karl W. Birkeland, Daniel B. Fagre
2024, Arctic, Antarctic, and Alpine Research (56)
Snow avalanches are a hazard and ecological disturbance across mountain landscapes worldwide. Understanding how avalanche frequency affects forests and vegetation improves infrastructure planning, risk management, and avalanche forecasting. We implemented a novel approach using lidar, aerial imagery, and a random forest model to classify imagery-observed vegetation within avalanche...
The incredible HALK: borrowing data for age assignment
Paul N. Frater, Zachary S. Feiner, Gretchen J.A. Hansen, Daniel A. Isermann, Alexander W. Latzka, Olaf P. Jensen
2024, Fisheries Magazine (49) 117-128
Understanding age and growth are important for fisheries science and management; however, age data are not routinely collected for many populations. We propose and test a method of borrowing age–length data across increasingly broader spatiotemporal levels to create a hierarchical age–length key (HALK). We assessed this method by comparing growth...
Updated three-dimensional temperature maps for the Great Basin, USA
Erick R. Burns, Jacob DeAngelo, Colin F. Williams
2024, Conference Paper, Proceedings of the 49th workshop on geothermal reservoir engineering
As part of the periodic update of the geothermal energy assessments for the USA (e.g., last update by Williams and others, 2008), a new three-dimensional temperature map has been constructed for the Great Basin, USA. Williams and DeAngelo (2011) identified uncertainty in estimates of conductive heat flow near land surface...
Sea turtle density surface models along the United States Atlantic coast
Andrew DiMatteo, Jason J. Roberts, D. Todd Jones-Farrand, Lance Garrison, Kristen Hart, Robert D. Kenney, William A. McLellan, Kate Lomac-MacNair, Debra Palka, Meghan E. Rickard, Kelsey E. Roberts, Ann M. Zoidis, L. Sparks
2024, Endangered Species Research (53) 227-245
Spatially explicit estimates of marine species distribution and abundance are required to quantify potential impacts from human activities such as military training and testing, fisheries interactions, and offshore energy development. There are 4 protected species of sea turtle (loggerhead, green, Kemp’s ridley, and leatherback) commonly found along the east coast...
Influence of inherited structure on flexural extension in foreland basin systems: Evidence from the northern Arkoma basin and southern Ozark dome, USA
Brandon Michael Lutz, Mark R. Hudson, Tyson Michael Smith, Marieke Dechesne, Leland R. Spangler, Anne E. McCafferty, Chelsea Morgan Amaral, Neil Patrick Griffis, Jaime Ann Megumi Hirtz
2024, Earth Science Reviews (251)
Extensional faults are key components of foreland basin systems. They form within the upper crust in response to flexure of the lithosphere and accommodate subsidence within the foredeep and forebulge depozones. Such faults are excellent proxies for orogenic system evolution and control the distribution of natural resources and hazards. However, the spatiotemporal evolution of flexural extension has not been documented...
The 2023 US National Seismic Hazard Model: Ground-motion characterization for the conterminous United States
Morgan P. Moschetti, Brad T. Aagaard, Sean Kamran Ahdi, Jason M. Altekruse, Oliver S. Boyd, Arthur D. Frankel, Julie A. Herrick, Mark D. Petersen, Peter M. Powers, Sanaz Rezaeian, Allison Shumway, James Andrew Smith, William J. Stephenson, Eric M. Thompson, Kyle Withers
2024, Earthquake Spectra (40) 1158-1190
We update the ground-motion characterization for the 2023 National Seismic Hazard Model (NSHM) for the conterminous United States. The update includes the use of new ground-motion models (GMMs) in the Cascadia subduction zone; an adjustment to the central and eastern United States (CEUS) GMMs to reduce misfits with observed data;...
Water resources inventory of the Las Cienegas National Conservation Area, southeastern Arizona
Jon P. Mason
2024, Scientific Investigations Report 2023-5131
The Las Cienegas National Conservation Area was established by the Las Cienegas National Conservation Area Establishment Act of 1999 (Public Law 106–538) and is managed by the Bureau of Land Management. Located in southeastern Arizona, the conservation area contains more than 45,000 acres of rolling grassland, wetlands, and woodlands surrounded...
Wildfire probability estimated from recent climate and fine fuels across the big sagebrush region
Martin C. Holdrege, Daniel Rodolphe Schlaepfer, Kyle A. Palmquist, Michele R. Crist, Kevin E. Doherty, William K. Lauenroth, Thomas E. Remington, Karin L. Riley, Karen C. Short, John C. Tull, Lief A. Wiechman, John B. Bradford
2024, Fire Ecology (20)
BackgroundWildfire is a major proximate cause of historical and ongoing losses of intact big sagebrush (Artemisia tridentata Nutt.) plant communities and declines in sagebrush obligate wildlife species. In recent decades, fire return intervals have shortened and area burned has increased in some areas, and habitat degradation is occurring where...
Status of water-level altitudes and long-term and short-term water-level changes in the Chicot and Evangeline (undifferentiated) and Jasper aquifers, greater Houston area, Texas, 2023
Jason K. Ramage
2024, Scientific Investigations Report 2024-5003
Since the early 1900s, groundwater withdrawn from the primary aquifers that compose the Gulf Coast aquifer system—the Chicot, Evangeline, and Jasper aquifers—has been an important source of water in the greater Houston area, Texas. This report, prepared by the U.S. Geological Survey in cooperation with the Harris-Galveston Subsidence District, City...
Trends in colony sizes for five colonial waterbird species in the Atlantic Flyway
Zachary G. Loman, Cynthia S. Loftin, Caleb S. Spiegel, Ruth Boettcher
2024, Cooperator Science Series 155-2024
Robust estimates of colonial waterbird (CWB) breeding population trends are deficient owing to a lack of range wide, standardized survey efforts. Evaluating conservation priorities and effectiveness of management requires reliable trend estimates across multiple spatial scales. One potential data source for CWB trend estimation is the Colonial Waterbird Database, created...
Brief communication: Recent estimates of glacier mass loss for western North America from laser altimetry
Brian Menounos, Alex Gardner, Caitlyn Florentine, Andrew Fountain
2024, The Cryosphere (18) 889-894
Glaciers in western North American outside of Alaska are often overlooked in global studies because their potential to contribute to changes in sea level is small. Nonetheless, these glaciers represent important sources of freshwater, especially during times of drought. Differencing recent ICESat-2 data from a digital elevation model derived from...
Sensitivity testing of marine turbidite age estimates along the Cascadia subduction zone
Lydia M. Staisch
2024, Bulletin of the Seismological Society of America (114) 1739-1753
9 earthquakes ruptured the full Cascadia subduction zone (CSZ) in the past 10 kyr, a hypothesis that relies on concurrent turbidite deposition generated from seismogenic strong ground motion along the ∼1100 km margin. Correlation of marine turbidite deposits is based on petrophysical characteristics and...
Development and calibration of HEC–RAS hydraulic, temperature, and nutrient models for the Mohawk River, New York
Thomas P. Suro, Michal J. Niemoczynski, Anna Boetsma
2024, Scientific Investigations Report 2024-5005
In support of a preliminary analysis performed by New York State Department of Environmental Conservation that found elevated nutrient levels along selected reaches of the Mohawk River, a one-dimensional, unsteady hydraulic and water-quality model (Hydrologic Engineering Center River Analysis System Nutrient Simulation Module 1 [HEC–RAS NSM I]) was developed by...
Sediment budget of a Maumee River headwater tributary: How streambank erosion, streambed-sediment storage, and streambed-sediment source inform our understanding of legacy phosphorus
Tanja N. Williamson, Faith Fitzpatrick, Rebecca M. Kreiling, James D. Blount, Diana L. Karwan
2024, Journal of Soils and Sediments (24) 1447-1463
ObjectiveWe described source and phosphorus (P) retention potential of soft, fine-grained, streambed sediment and associated phosphorus (sed-P) during summer low-flow conditions. Combining in-channel, sed-P storage with relative age provided context on relevance to western Lake Erie Basin management goals.MethodsIn 2019, rapid geomorphic assessment (30 reaches) compared...
Metabarcoding is (usually) more cost effective than seining or qPCR for detecting tidewater gobies and other estuarine fishes
Kevin D. Lafferty
2024, PeerJ (12)
Many studies have shown that environmental DNA (eDNA) sampling can be more sensitive than traditional sampling. For instance, past studies found a specific qPCR probe of a water sample is better than a seine for detecting the endangered northern tidewater goby, Eucyclogobius newberryi. Furthermore, a metabarcoding sample often detects more...
High inter-population connectivity and occasional gene flow between subspecies improves recovery potential for the endangered Least Bell’s Vireo
Amy G. Vandergast, Barbara E. Kus, Dustin A. Wood, Anna Mitelberg, Julia G. Smith, Elizabeth R. Milano
2024, Ornithological Applications (126)
Increasingly, genomic data are being used to supplement field-based ecological studies to help evaluate recovery status and trends in endangered species. We collected genomic data to address two related questions regarding the Least Bell’s Vireo (Vireo bellii), an endangered migratory songbird restricted to southern California riparian habitat for breeding....
Segment anything model can not segment anything: Assessing AI foundation model's generalizability in permafrost mapping
Wenwen Li, Chia-Yu Hsu, Sizhe Wang, Yezhou Yang, Hyunho Lee, Anna Liljedahl, Chandi Witharana, Yili Yang, Brendan M. Rogers, Samantha T. Arundel, Matthew B. Jones, Kenton McHenry, Patricia Solis
2024, Remote Sensing (16)
This paper assesses trending AI foundation models, especially emerging computer vision foundation models and their performance in natural landscape feature segmentation. While the term foundation model has quickly garnered interest from the geospatial domain, its definition remains vague. Hence, this paper will first introduce AI foundation models and their defining...
Forest fire, thinning, and flood in wildland-urban interface: UAV and lidar-based estimate of natural disaster impacts
Temuulen Ts. Sankey, Lauren Tango, Julia Tatum, Joel B. Sankey
2024, Landscape Ecology (39)
ContextWildland-urban interface (WUI) areas are facing increased forest fire risks and extreme precipitation events due to climate change, which can lead to post-fire flood events. The city of Flagstaff in northern Arizona, USA experienced WUI forest thinning, fire, and record rainfall events, which collectively contributed to large floods...
Prioritizing water availability study settings to address geogenic contaminants and related societal factors
Melinda L. Erickson, Craig J. Brown, Elizabeth J. Tomaszewski, Joseph D. Ayotte, Sharon L. Qi, Douglas B. Kent, J.K. Bohlke
2024, Environmental Monitoring and Assessment (196)
Water availability for human and ecological uses depends on both water quantity and water quality. The U.S. Geological Survey (USGS) is developing strategies for prioritizing regional-scale and watershed basin-scale studies of water availability across the nation. Previous USGS ranking processes for basin-scale studies incorporated primarily water quantity factors...
Range-wide population trend analysis for greater sage-grouse (Centrocercus urophasianus)—Updated 1960–2023
Brian G. Prochazka, Peter S. Coates, Cameron L. Aldridge, Michael S. O’Donnell, David R. Edmunds, Adrian P. Monroe, Steve E. Hanser, Lief A. Wiechman, Michael P. Chenaille
2024, Data Report 1190
Greater sage-grouse (Centrocercus urophasianus) are at the center of state and national land-use policies largely because of their unique life-history traits as an ecological indicator for health of sagebrush ecosystems. This updated population trend analysis provides state and federal land and wildlife managers with best-available science to help guide management...
Liquefaction timing and post-triggering seismic energy: A comparison of crustal and subduction zone earthquakes
Trevor J. Carey, Atira Naik, Andrew James Makdisi, Henry Mason
2024, Conference Paper, Proceedings, Geo-Congress 2024
The objective of the study is to assess when liquefaction is triggered in a suite of ground motions following simplified approaches and measure the remaining post-triggering energy content of those ground motions. For liquefaction-induced deformations, current simplified analysis procedures do not directly incorporate temporal effects and rely on peak transient...