A Bayesian approach to predict sub-annual beach change and recovery
Kathleen Wilson, Erika E. Lentz, Jennifer L. Miselis, Ilgar Safak, Owen T. Brenner
2019, Estuaries and Coasts (42) 112-131
The upper beach, between the astronomical high tide and the dune-toe, supports habitat and recreation along many beaches, making predictions of upper beach change valuable to coastal managers and the public. We developed and tested a Bayesian network (BN) to predict the cross-shore position of an upper beach elevation contour...
Understanding how microbiomes influence the systems they inhabit
E.K. Hall, E. S. Bernhardt, R.L. Bier, M.A. Bradford, C.M. Boot, J.B. Cotner, P.A. del Giorgio, S.E. Evans, E.B.; Graham, S.E. Jones, J.T. Lennon, Kenneth J. Locey, D. Nemergut, B. Osborne, J.D. Rocca, J.S. Schimel, Mark Waldrop, M.W. Wallenstein
2019, Nature Microbiology (3) 977-982
Translating the ever-increasing wealth of information on microbiomes (environment, host, or built environment) to advance the understanding of system-level processes is proving to be an exceptional research challenge. One reason for this challenge is that relationships between characteristics of microbiomes and the system-level processes they influence are often evaluated in...
How many measurements are required to construct an accurate sand budget in a large river? Insights from analyses of signal and noise
Paul E. Grams, Daniel D. Buscombe, David J. Topping, Matthew Kaplinski, Joseph Hazel
2019, Earth Surface Processes and Landforms (44) 160-178
Morphological change in river channels is frequently evaluated in the context of mass balance sediment budgets. In a closed sediment budget, measurements of sediment influx and efflux are coupled with measured changes in channel topography to provide both spatial...
A comparison of methods for streamflow uncertainty estimation
Julie E. Kiang, Christopher L. Gazoorian, Hillary McMillan, Gemma Coxon, Jerome Le Coz, Ida Westerberg, Arnaud Belleville, Damien Sevrez, Anna Sikorska, Asgeir Petersen-Overleir, Trond Reitan, Jim Freer, Benjamin Renard, Valentin Mansanarez, Robert R. Mason, Jr.
2019, Water Resources Research (54) 7149-7176
Streamflow time series are commonly derived from stage‐discharge rating curves, but the uncertainty of the rating curve and resulting streamflow series are poorly understood. While different methods to quantify uncertainty in the stage‐discharge relationship exist, there is limited understanding of how uncertainty estimates differ between methods due...
Evaluating the relationship among wetland vertical development, elevation capital, sea-level rise and tidal marsh sustainability
Donald R. Cahoon, James C. Lynch, Charles T. Roman, John Paul Schmit, Dennis E. Skidds
2019, Estuaries and Coasts (42) 1-15
Accelerating sea-level rise and human impacts to the coast (e.g., altered sediment supply and hydrology, nutrient loading) influence the accumulation of sediment and organic matter, and thereby impact the ability of coastal tidal wetlands to maintain an elevation consistently within the vegetation growth range. Critical components of marsh sustainability are...
Pressure core analysis of geomechanical and fluid flow properties of seals associated with gas hydrate-bearing reservoirs in the Krishna-Godavari Basin, offshore India
Junbong Jang, Sheng Dai, J. Yoneda, William F. Waite, Laura A. Stern, Lee-Gray Boze, Timothy S. Collett, Pushpendra Kumar
2019, Marine and Petroleum Geology (108) 537-550
Physical properties of the sediment directly overlying a gas hydrate reservoir provide important controls on the effectiveness of depressurizing that reservoir to extract methane from gas hydrate as an energy resource. The permeability of overlying sediment determines if a gas hydrate reservoir’s upper contact will provide an effective seal...
DNA mixtures for ecology
Suresh Sethi, Wesley Larson, Keith Turnquist, Daniel A. Isermann
2019, Methods in Ecology and Evolution 109-119
Mixtures of DNA from multiple contributors present a novel opportunity to count individuals to inform fish and wildlife ecology.We apply a likelihood-based framework to estimate the number of contributors to a DNA mixture for ecological applications. We then assess the performance of DNA mixture estimation through a combination of...
Modeling golden eagle‐vehicle collisions to design mitigation strategies
Eric V. Lonsdorf, Carol A. Sanders-Reed, Clint W. Boal, Taber Allison
2019, Journal of Wildlife Management (82) 1644
The incidental take of golden eagles (Aquila chrysaetos) as a result of wind energy development requires some form of compensatory mitigation. Although several options have been proposed, only one has been formerly accepted and implemented, and the lack of options can limit the permit...
Tools for managing hydrologic alteration on a regional scale II: Setting targets to protect stream health
Raphael D. Mazor, Jason T. May, Ashmita Sengupta, Kenneth S. McCune, Brian P. Bledsoe, Eric D. Stein
2019, Freshwater Biology (63) 786-803
Widespread hydrologic alteration creates a need for tools to assess ecological impacts to streams that can be applied across large geographic scales. A regional framework for biologically based flow management can help catchment managers prioritise streams for protection, evaluate impacts of disturbance or interventions and provide a starting point for...
Moving from generalisations to specificity about mangrove-saltmarsh dynamics
Kerrylee Rogers, Ken W. Krauss
2019, Wetlands (39) 1155-1178
Spatial and temporal variability in factors influencing mangrove establishment and survival affects the distribution of mangrove, particularly near their latitudinal limit, where mangrove expansion into saltmarsh is conspicuous. In this paper the spatial variability in mangrove distribution and variability in factors influencing mangrove establishment and survival during the Quaternary period...
Airborne bacteria in Earth’s lower stratosphere resemble taxa detected in the troposphere: results from a new NASA aircraft bioaerosol collector (ABC)
David J. Smith, Jayamary D. Ravichandar, Sunit Jain, Dale W. Griffin, Hongbin Yu, Qian Tan, James Thissen, Terry Lusby, Patrick Nicoll, Sarah Shedler, P. Martinez, Alejandro Osorio, Jason Lechniak, Samuel Choi, Kayleen Sabino, Kathryn Iverson, Luisa Chan, Crystal Jaing, John McGrath
2019, Frontiers in Microbiology (9)
Airborne microorganisms in the upper troposphere and lower stratosphere remain elusive due to a lack of reliable sample collection systems. To address this problem, we designed, installed, and flight-validated a novel Aircraft Bioaerosol Collector (ABC) for NASA's C-20A that can make collections for microbiological research investigations up to altitudes of...
Nesting ecology of a naturalized population of Mallards Anas platyrhynchos in New Zealand
Jennifer L. Sheppard, Courtney L. Amundson, Todd W. Arnold, David Klee
2019, Ibis (161) 504-520
Investigating the reproductive ecology of naturalized species provides insights into the role of the source population's characteristics vs. post‐release adaptation that influence the success of introduction programmes. Introduced and naturalized Mallards Anas platyrhynchos are widely established in New Zealand (NZ), but little is known regarding their reproductive ecology. We evaluated the nesting...
Demographic consequences of conservation reserve program grasslands for lesser prairie‐chickens
David A. Haukos
2019, Journal of Wildlife Management (82) 1617-1632
Knowledge of landscape and regional circumstances where conservation programs are successful on working lands in agricultural production are needed. Converting marginal croplands to grasslands using conservation programs such as the United States Department of Agriculture Conservation Reserve Program (CRP) should be beneficial for many grassland‐obligate wildlife species; however, addition of...
Influence of extreme and annual floods on point-bar sedimentation: Inferences from Powder River, Montana, USA
M. Ghinasse, John A. Moody, Deborah A. Martin
2019, GSA Bulletin (131) 71-83
Effects of discharge variability on point-bar sedimentation are not well documented, although resulting changes in flow patterns are well known. This paper focuses on a meander of Powder River in Montana (USA). In May 1978, Powder River had a 50-year recurrence flood, which caused...
Tracing the cycling and fate of the munition, Hexahydro-1,3,5-trinitro-1,3,5-triazine in a simulated sandy coastal marine habitat with a stable isotopic tracer, 15N-[RDX]
Thivanka Ariyarathna, Mark Ballentine, Penny Vlahos, Richard W. Smith, Christopher Cooper, J.K. Bohlke, Stephen Fallis, Thomas J. Groshens, Craig R. Tobias
2019, Science of the Total Environment (647) 369-378
Coastal marine habitats become contaminated with the munitions constituent, Hexahydro-1,3,5-trinitro-1,3,5-trazine (RDX), via military training, weapon testing and leakage of unexploded ordnance. This study used 15N labeled RDX in simulated aquarium-scale coastal marine habitat containing seawater, sediment, and biota to track removal pathways from surface water including sorption onto particulates, degradation to nitroso-triazines and mineralization to dissolved...
Phenology of hatching, emergence, and end-of-season body size in young-of-year Coho Salmon in thermally contrasting streams draining the Copper River Delta, Alaska
Emily Y. Campbell, Jason B. Dunham, Gordon H. Reeves, Steve M. Wondzell
2019, Canadian Journal of Fisheries and Aquatic Sciences (76) 185-191
Phenology can be linked to individual fitness, particularly in strongly seasonal environments where the timing of events have important consequences for growth, condition, and survival. We studied the phenology of Coho Salmon hatching and emergence in streams with contrasting thermal variability, but in close geographic proximity. Following emergence, we tracked...
Herring Disease Program, February 1, 2018 - January 31, 2019
Paul Hershberger, Maureen Purcell
2019, Report
This report describes our laboratory and field results for the period February 1, 2018-January 31, 2019....
Landscape structure and temporal dynamic effects on Wintering Mallard abundance and distributions in the Mississippi alluvial valley
John A. Herbert, Avishek Chakraborty, Luke W. Naylor, William S. Beattty, David G. Krementz
2019, Landscape Ecology (33) 1319-1334
Context Management of wintering waterfowl in North America requires adaptability because constant landscape and environmental change challenges existing management strategies regarding waterfowl habitat use at large spatial scales. Migratory waterfowl including mallards (Anas platyrhynchos) use the lower Mississippi Alluvial Valley (MAV) for wintering habitat, making this an important area of...
Capture versus tagging impacts on chum salmon freshwater spawning migration travel times
Suresh Sethi
2019, Fisheries Management and Ecology (25) 296-303
The spawning migration travel times of chum salmon, Oncorhynchus keta (Walbaum), fitted with gastrically implanted radio tags vs external spaghetti tags were tested for a short [≈60 river km (rkm)] and long migration route (≈730 rkm) on the Koyukuk River, Alaska, USA. Using a novel application of statistical arrival curve...
Recent advances in environmental flows science and water management—Innovation in the Anthropocene
Angela H Arthington, Jonathan Kennen, Eric D. Stein, J. Angus Webb
2019, Freshwater Biology (63) 1022-1034
The implementation of environmental flow regimes offers a promising means to protect and restore riverine, wetland and estuarine ecosystems, their critical environmental services and cultural/societal values.This Special Issue expands the scope of environmental flows and water science in theory and practice, offering 20 papers from academics, agency researchers and...
The multiple-comparison trap and the Raven’s paradox—perils of using null hypothesis testing in environmental assessment
Song S. Qian, Thomas F. Cuffney
2019, Environmental Monitoring and Assessment (190)
Detecting and quantifying environmental thresholds is frequently an important step in understanding ecological responses to environmental stressors. We discuss two statistical issues often encountered in threshold detection and quantification when statistical null hypothesis testing is used as a main analytical tool.The hidden multiple-comparison trap (leading to a much higher risk...
Early mortality and freshwater forage fish recruitment: Nonnative alewife and native rainbow smelt interactions in Lake Champlain
Paul W. Simonin, Lars G. Rudstam, Patrick J. Sullivan, Donna L. Parrish, Bernard Pientka
2019, Canadian Journal of Fisheries and Aquatic Sciences (76) 806-814
We studied the consequences of a nonnative species introduction and changes in temperature on early mortality and recruitment of native rainbow smelt (Osmerus mordax) and nonnative alewife (Alosa pseudoharengus) in Lake Champlain using a simulation model. Distribution patterns of adults and young-of-the-year (YOY) fish were predicted using a model based...
A dam passage performance standard model for American shad
Daniel S. Stitch, Timothy F. Sheehan, Joseph D. Zydlewski
2019, Canadian Journal of Fisheries and Aquatic Sciences (76) 762-779
Objectives for recovery of alosines commonly involve improving fish passage at dams during migration. However, a quantitative basis for dam passage performance standards is largely absent. We describe development of a stochastic life-history-based simulation model for American shad, Alosa sapidissima, to estimate effects of dam passage and migratory delay on abundance,...
Managing the vanishing North American hunter: A novel framework to address declines in hunters and hunter-generated conservation funds
J.L. Price-Tack, Conor P. McGowan, S.S. Ditchkoff, W.C. Morse, Orin J. Robinson
2019, Human Dimensions of Wildlife: An International Journal (23) 515-532
As long as the funding mechanism supporting state wildlife conservation relies heavily on hunter-generated funds, declines in hunter participation are a threat to the conservation of both game and non-game species. To address options to bolster wildlife agency profit from the sale of hunting licenses, we developed a stage-based, stochastic...
Vertical zonation and niche breadth of tidal marsh plants along the Northeast Pacific coast
Christopher N. Janousek, Karen M. Thorne, John Y. Takekawa
2019, Estuaries and Coasts (42) 85-98
The distribution patterns of sessile organisms in coastal intertidal habitats typically exhibit vertical zonation, but little is known about variability in zonation among sites or species at larger spatial scales. Data on such heterogeneity could inform mechanistic understanding of factors affecting species distributions as well as efforts to assess and...