Flow-mediated effects on travel time, routing, and survival of juvenile Chinook salmon in a spatially complex, tidally forced river delta
Russell W. Perry, Adam C. Pope, Jason G. Romine, Patricia L. Brandes, Jon R. Burau, Aaron R. Blake, Arnold J. Ammann, Cyril J. Michel
2018, Canadian Journal of Fisheries and Aquatic Sciences (75) 1886-1901
We evaluated the interacting influences of river flows and tides on travel time, routing, and survival of juvenile late-fall Chinook salmon (Oncorhynchus tshawytscha) migrating through the Sacramento–San Joaquin River Delta. To quantify these effects, we jointly modeled the travel time, survival, and migration routing in relation to individual time-varying covariates...
A review of Bayesian belief network models as decision-support tools for wetland conservation: Are water birds potential umbrella taxa?
Maggie P. MacPherson, Elisabeth B. Webb, Andy Raedeke, Doreen C. Mengel, Frank Nelson
2018, Biological Conservation (226) 215-223
Creative approaches to identifying umbrella species hold promise for devising effective surrogates of ecological communities or ecosystems. However, mechanistic niche models that predict range or habitat overlap among species may yet lack development. We reviewed literature on taxon-centered Bayesian belief network (BBN) models to explore a novel approach to identify...
Landsat Collections
U.S. Geological Survey
2018, Fact Sheet 2018-3049
In 2016, the U.S. Geological Survey reorganized the Landsat archive into a tiered collection structure, which ensures that Landsat Level-1 products provide a consistent archive of known data quality to support time-series analyses and data “stacking” while controlling continuous improvement of the archive and access to all data as they are...
Estimating distemper virus dynamics among wolves and grizzly bears using serology and Bayesian state‐space models
Paul C. Cross, Frank T. van Manen, Mafalda Viana, Emily S. Almberg, Daniel Bachen, Ellen E. Brandell, Mark A. Haroldson, Peter J. Hudson, Daniel R. Stahler, Douglas W. Smith
2018, Ecology and Evolution (8) 8726-8735
Many parasites infect multiple hosts, but estimating the transmission across host species remains a key challenge in disease ecology. We investigated the within and across host species dynamics of canine distemper virus (CDV) in grizzly bears (Ursus arctos) and wolves (Canis lupus) of the Greater Yellowstone Ecosystem (GYE). We hypothesized...
Flushing of the deep Pacific Ocean and the deglacial rise of atmospheric CO2 concentrations
Jianghui Du, Brian Haley, Alan Mix, Maureen Walczak, Summer K. Praetorius
2018, Nature Geoscience (11) 749-755
During the last deglaciation (19,000–9,000 years ago), atmospheric CO2increased by about 80 ppm. Understanding the mechanisms responsible for this change is a central theme of palaeoclimatology, relevant for predicting future CO2 transfers in a warming world. Deglacial CO2 rise hypothetically tapped an accumulated deep Pacific carbon reservoir, but the processes remain elusive...
Global and Arctic climate sensitivity enhanced by changes in North Pacific heat flux
Summer K. Praetorius, Maria A. Rugenstein, Geeta Persad, Ken Caldeira
2018, Nature Communications (9) 1-12
Arctic amplification is a consequence of surface albedo, cloud, and temperature feedbacks, as well as poleward oceanic and atmospheric heat transport. However, the relative impact of changes in sea surface temperature (SST) patterns and ocean heat flux sourced from different regions on Arctic temperatures are not well constrained. We modify...
Spatial relationships of levees and wetland systems within floodplains of the Wabash Basin, USA
Ryan R. Morrison, Erin N. Bray, Fernando Nardi, Antonio Annis, Quan Dong
2018, Journal of the American Water Resources Association (54) 934-948
Given the unique biogeochemical, physical, and hydrologic services provided by floodplain wetlands, proper management of river systems should include an understanding of how floodplain modifications influence wetland ecosystems. The construction of levees can reduce river–floodplain connectivity, yet it is unclear how levees affect wetlands within floodplains, let alone the cumulative impacts...
Lake sediment fecal and biomass burning biomarkers provide direct evidence for prehistoric human-lit fires in New Zealand
Elena Argiriadis, Dario Battistel, David B. McWethy, Marco Vecchiato, Torben Kirchgeorg, Natalie M. Kehrwald, Cathy Whitlock, Janet M. Wilmshurst, Carlo Barbante
2018, Scientific Reports (8)
Deforestation associated with the initial settlement of New Zealand is a dramatic example of how humans can alter landscapes through fire. However, evidence linking early human presence and land-cover change is inferential in most continental sites. We employed a multi-proxy approach to reconstruct anthropogenic land use in New Zealand’s South...
Efficiency of sampling sunfishes using snorkeling in clear, warmwater streams of the south-central United States
Robert Mollenhauer, Shannon K. Brewer
2018, Journal of Fish and Wildlife Management (9) 602-609
The continued evaluation of fish-sampling gears and methods is essential to identify their applicability across environmental conditions and among species. Although limited by visibility, snorkeling has potential advantages relative to other fish-sampling gears in wadeable streams (e.g., minimally intrusive, cost effective, and appropriate in deeper areas). Clear water is common...
Probabilistic models of seafloor composition using multispectral acoustic backscatter: The benthic detectorists
Daniel D. Buscombe, Paul E. Grams, Matthew Kaplinski
2018, Conference Paper
We describe and compare two probabilistic models for task-specific seafloor characterization based on multispectral backscatter. We examine whether generative or discriminative approaches to supervised seafloor characterization do better at harnessing the greatly increased information about seafloor substrate composition that is encoded in the backscattering response across multiple frequencies. A Gaussian mixture model (GMM) is proposed as a...
Liverworts from Attu Island, Near Islands, Aleutian Islands, Alaska (USA) with comparison to the Commander Islands (Russia)
Stephen S. Talbot, Wilfred B. Schofield, Jiri Vana, Sandra L. Talbot
2018, Botanica Pacifica (7) 127-141
The liverwort flora of Attu Island, the westernmost Aleutian Island in the United States, was studied to assess species diversity in the hyperoceanic sector of the northern boreal subzone. The field study was undertaken in sites selected to represent a spectrum of environmental variation, primarily within the eastern part of...
Promoting synergy in the innovative use of environmental data—Workshop summary
Healy Hamilton, Gerald F. Guala, Annie Simpson
2018, Open-File Report 2018-1104
From December 2 to 4, 2015, NatureServe and the U.S. Geological Survey organized and hosted a biodiversity and ecological informatics workshop at the U.S. Department of the Interior in Washington, D.C. The workshop objective was to identify user-driven future directions and areas of collaboration in advanced applications of environmental data...
Herbicides and herbivory interact to drive plant community and crop‐tree establishment
Thomas D. Stokely, Jake Verschuyl, Joan Hagar, Matthew G. Betts
2018, Ecological Applications (28) 2011-2023
Land management practices often directly alter vegetation structure and composition, but the degree to which ecological processes such as herbivory interact with management to influence biodiversity is less well understood. We hypothesized that large herbivores compound the effects of intensive forest management on early seral plant communities and plantation establishment...
Field evaluation of carbon dioxide as a fish deterrent at a water management structure along the Illinois River
Aaron R. Cupp, Justin R. Smerud, John Tix, Susan M. Schleis, Kim T. Fredricks, Richard A. Erickson, Jon Amberg, William S. Morrow, Carolyn M. Koebel, Elizabeth A. Murphy, Chad Vishy, K. Douglas Blodgett
2018, Management of Biological Invasions (9) 299-308
Construction of a water management structure (WMS) in the levee surrounding The Nature Conservancy’s Emiquon Preserve (Havana, Illinois, USA) created a new hydrological connection and potential aquatic invasive species pathway between the Illinois River and a large conservation wetland complex. Site managers need a control tool that deters the upstream...
An interferometric synthetic aperture radar (InSAR) habitat suitability model to identify overwinter conditions for coregonine whitefishes in Arctic lagoons
Marguerite Tibbles, Jeffrey A. Falke, Andrew R. Mahoney, Martin D. Robards, Andrew C. Seitz
2018, Transactions of the American Fisheries Society (147) 1167-1178
Lagoons provide critical habitats for many fishes, including coregonine whitefishes, which are a mainstay in many subsistence fisheries of rural communities in Arctic Alaska. Despite their importance, little is known about the overwintering habits of whitefishes in Arctic Alaska due to the challenges associated with sampling during winter. We developed...
An evaluation of three fish surveys in the San Francisco Estuary, 1995–2015
James T. Peterson, Miguel F. Barajas
2018, San Francisco Estuary and Watershed Science (16)
Resource managers rely on long-term monitoring surveys conducted in the San Francisco Estuary to evaluate the status and trends of resident fish populations in this important region. These surveys are potentially confounded because of the incomplete detection of individuals and species, the magnitude of which is often related to the...
Near-solidus melts of MORB + 4 wt% H2O at 0.8 – 2.8 GPa applied to issues of subduction magmatism and continent formation
Thomas W. Sisson, Peter B. Kelemen
2018, Contributions to Mineralogy and Petrology (173)
Experiments on MORB + 4 wt% H2O at 0.8–2.8 GPa and 700–950 °C (Liu in High pressure phase equilibria involving the amphibolite–eclogite transformation. PhD dissertation, Stanford University, Stanford, California, 1997; Liu et al. in Earth Planet Sci Lett 143:161–171, 1996) were reexamined for their major and trace element melt compositions and melting relations. Degree of...
Millennial soil retention of terrestrial organic matter deposited in the Bengal Fan
Katherine L. French, Christopher Hein, Negar Haghipour, Lukas Wacker, Hermann Kudrass, Timothy Eglinton, Valier Galy
2018, Scientific Reports (8) 1-8
The abundance of organic carbon (OC) in vegetation and soils (~2,600 PgC) compared to carbon in the atmosphere (~830 PgC) highlights the importance of terrestrial OC in global carbon budgets. The residence time of OC in continental reservoirs, which sets the rates of carbon exchange between land and atmosphere, represents...
Biological and ecological science for Ohio—The Buckeye State
U.S. Geological Survey
2018, Fact Sheet 2018-3034
Ohio is home to lakes, rivers, streams, wetlands, forests, prairies, and 312 miles of Lake Erie shoreline. These resources sustain Ohio’s communities by supporting vital sectors of the economy and cultural heritage such as fishing, hunting, and other outdoor recreation. Lake Erie provides drinking water for 3 million Ohioans,...
Macrobenthic infaunal communities associated with deep‐sea hydrocarbon seeps in the northern Gulf of Mexico
Travis W. Washburn, Amanda W.J. Demopoulos, Paul A. Montagna
2018, Marine Ecology (39)
There are thousands of seeps in the deep ocean worldwide; however, many questions remain about their contributions to global biodiversity and the surrounding deep‐sea environment. In addition to being globally distributed, seeps provide several benefits to humans such as unique habitats, organisms with novel genes, and carbon regulation. The purpose...
State-level freshwater mussel programs: Current status and a research framework to aid in mussel management and conservation
Kristen L. Bouska, Amanda E. Rosenberger, Stephen E. McMurray, Garth A. Lindner, Kayla N. Key
2018, Fisheries (43) 345-360
Despite increased focus on their ecology and conservation, freshwater mussels remain one of the most imperiled groups of aquatic organisms. We documented current management actions, resources, and challenges in managing freshwater mussels in the United States through a survey of state natural resource agencies. Approximately 85% of surveyed states (N = 40)...
Classifying physiographic regimes on terrain and hydrologic factors for adaptive generalization of stream networks
Larry V. Stanislawski, Michael P. Finn, Barbara P. Buttenfield
2018, International Journal of Cartography (1) 4-21
Automated generalization software must accommodate multi-scale representations of hydrographic networks across a variety of geographic landscapes, because scale-related hydrography differences are known to vary in different physical conditions. While generalization algorithms have been tailored to specific regions and landscape conditions by several researchers in recent years, the selection and characterization...
Stream‐centric methods for determining groundwater contributions in karst mountain watersheds
Bethany Neilson, Hyrum Tennant, Michelle Barnes, Trinity Stout, Matthew P. Miller, Rachel S. Gabor, Yusef Jameel, Mallory Millington, Andrew Gelderloos, Gabriel J. Bowen, Paul D. Brooks
2018, Water Resources Research (54) 6708-6724
Climate change influences on mountain hydrology are uncertain, but likely to be mediated through changes in subsurface hydrologic residence times and flowpaths. The heterogeneity of karst aquifers add complexity in assessing the resiliency of these water sources to perturbation, suggesting a clear need to quantify contributions from and losses to...
Effect of spatial and temporal scale on simulated groundwater recharge investigations
Fred D. Tillman, Tom Pruitt, Subhrendu Gangopadhyay
2018, Advances in Water Resources (119) 257-270
Hydrologic model input datasets such as climate, land use, elevation, soil, and geology information are available in a range of scales for use in water resources investigations. Smaller spatial and temporal scale input data allow groundwater recharge models to simulate more physically realistic processes and presumably result in more accurate...
Implications of spatially variable costs and habitat conversion risk in landscape-scale conservation planning
Max Post van der Burg, Neil Chartier, Ryan G. Drum
2018, Journal of Fish and Wildlife Management (9) 402-414
“Strategic habitat conservation” refers to a process used by the U.S. Fish and Wildlife Service to develop cost-efficient strategies for conserving wildlife populations and their habitats. Strategic habitat conservation focuses on resolving uncertainties surrounding habitat conservation to meet specific wildlife population objectives (i.e., targets) and...