Post-wildfire landscape change and erosional processes from repeat terrestrial lidar in a steep headwater catchment, Chiricahua Mountains, Arizona, USA
Stephen B. DeLong, Ann M. Youberg, Whitney M. DeLong, Brendan P. Murphy
2018, Geomorphology (300) 13-30
Flooding and erosion after wildfires present increasing hazard as climate warms, semi-arid lands become drier, population increases, and the urban interface encroaches farther into wildlands. We quantify post-wildfire erosion in a steep, initially unchannelized, 7.5 ha headwater catchment following the 2011 Horseshoe 2 Fire in the Chiricahua Mountains of southeastern Arizona....
Quantitative tools for implementing the new definition of significant portion of the range in the U.S. Endangered Species Act
Julia E. Earl, Samuel Nicol, Ruscena Wiederholt, Jay E. Diffendorfer, Darius J. Semmens, D. T. Tyler Flockhart, Brady Mattsson, Gary McCracken, D. Ryan Norris, Wayne E. Thogmartin, Laura Lopez-Hoffman
2018, Conservation Biology (32) 35-49
In 2014, the Fish and Wildlife Service (FWS) and National Marine Fisheries Service announced a new policy interpretation for the U.S. Endangered Species Act (ESA). According to the act, a species must be listed as threatened or endangered if it is determined to be threatened or endangered in a significant...
Position-specific 13C distributions within propane from experiments and natural gas samples
Alison Piasecki, Alex L. Sessions, Michael Lawson, A.A. Ferreira, E. V. Santos Neto, Geoffrey S. Ellis, Michael Lewan, J.M. Eilers
2018, Geochimica et Cosmochimica Acta (220) 110-124
Site-specific carbon isotope measurements of organic compounds potentially recover information that is lost in a conventional, ‘bulk’ isotopic analysis. Such measurements are useful because isotopically fractionating processes may have distinct effects at different molecular sites, and thermodynamically equilibrated populations of molecules tend to concentrate heavy isotopes in one molecular site...
Greater sage-grouse population trends across Wyoming
David R. Edmunds, Cameron L. Aldridge, Michael S. O’Donnell, Adrian P. Monroe
2018, Journal of Wildlife Management (82) 397-412
The scale at which analyses are performed can have an effect on model results and often one scale does not accurately describe the ecological phenomena of interest (e.g., population trends) for wide-ranging species: yet, most ecological studies are performed at a single, arbitrary scale. To best determine local and regional...
The Pleurobemini (Bivalvia: Unionida) revisited: Molecular species delineation using a mitochondrial DNA gene reveals multiple conspecifics and undescribed species
Kentaro Inoue, David M. Hayes, John L. Harris, Nathan A. Johnson, Cheryl L. Morrison, Michael S. Eackles, Tim King, Jess W. Jones, Eric M. Hallerman, Alan D. Christian, Charles R. Randklev
2018, Invertebrate Systematics (32) 689-702
The Pleurobemini (Bivalvia: Unionida) represent approximately one-third of freshwater mussel diversity in North America. Species identification within this group is challenging due to morphological convergence and phenotypic plasticity. Accurate species identification, including characterisation of currently unrecognised taxa, is required to develop effective conservation strategies because many species in the group...
Passive restoration following ungulate removal in a highly disturbed tropical wet forest devoid of native seed dispersers
Melia G. Nafus, Julie A. Savidge, Amy A. Yackel Adams, Michelle T. Christy, Robert Reed
2018, Restoration Ecology (26) 331-337
Overabundant ungulate populations can alter forests. Concurrently, global declines of seed dispersers may threaten native forest structure and function. On an island largely devoid of native vertebrate seed dispersers, we monitored forest succession for 7 years following ungulate exclusion from a 5-ha area and adjacent plots with ungulates still present....
Everglades Depth Estimation Network (EDEN)—A decade of serving hydrologic information to scientists and resource managers
Eduardo Patino, Paul Conrads, Eric D. Swain, James M. Beerens
2018, Fact Sheet 2017-3069
IntroductionThe Everglades Depth Estimation Network (EDEN) provides scientists and resource managers with regional maps of daily water levels and depths in the freshwater part of the Greater Everglades landscape. The EDEN domain includes all or parts of five Water Conservation Areas, Big Cypress National Preserve, Pennsuco Wetlands, and Everglades National...
Historical cover trends in a sagebrush steppe ecosystem from 1985 to 2013: Links with climate, disturbance, and management
Hua Shi, Matthew B. Rigge, Collin G. Homer, George Z. Xian, Debbie Meyer, Brett Bunde
2018, Ecosystems (21) 913-929
Understanding the causes and consequences of component change in sagebrush steppe is crucial for evaluating ecosystem sustainability. The sagebrush (Artemisia spp.) steppe ecosystem of the northwest USA has been impacted by the invasion of exotic grasses, increasing fire return intervals, changing land management practices, and fragmentation, often lowering the...
Landscape-scale processes influence riparian plant composition along a regulated river
Emily C. Palmquist, Barbara Ralston, David M. Merritt, Patrick B. Shafroth
2018, Journal of Arid Environments (148) 54-64
Hierarchical frameworks are useful constructs when exploring landscape- and local-scale factors affecting patterns of vegetation in riparian areas. In drylands, which have steep environmental gradients and high habitat heterogeneity, landscape-scale variables, such as climate, can change rapidly along a river's course, affecting the relative influence of environmental variables at different...
A new framework for analysing automated acoustic species detection data: Occupancy estimation and optimization of recordings post-processing
Thierry A. Chambert, J. Hardin Waddle, David A.W. Miller, Susan C. Walls, James D. Nichols
2018, Methods in Ecology and Evolution (9) 560-570
The development and use of automated species-detection technologies, such as acoustic recorders, for monitoring wildlife are rapidly expanding. Automated classification algorithms provide a cost- and time-effective means to process information-rich data, but often at the cost of additional detection errors. Appropriate methods are necessary to analyse such data while dealing...
A probe-based quantitative PCR assay for detecting Tetracapsuloides bryosalmonae in fish tissue and environmental DNA water samples
Patrick R. Hutchins, Adam J. Sepulveda, Renee Martin, Lacey Hopper
2018, Conservation Genetics Resources (10) 317-319
A probe-based quantitative real-time PCR assay was developed to detect Tetracapsuloides bryosalmonae, which causes proliferative kidney disease in salmonid fish, in kidney tissue and environmental DNA (eDNA) water samples. The limits of detection and quantification were 7 and 100 DNA copies for calibration standards and T. bryosalmonae was reliably...
Novel application of explicit dynamics occupancy models to ongoing aquatic invasions
Adam Sepulveda
2018, Journal of Applied Ecology (55) 917-925
Identification of suitable habitats, where invasive species can establish, is an important step towards controlling their spread. Accurate identification is difficult for new or slow invaders because unoccupied habitats may be suitable, given enough time for dispersal, while occupied habitats may prove to be unsuitable for establishment.To identify the suitable...
Pneumonia in bighorn sheep: Risk and resilience
E. Frances Cassirer, Kezia R. Manlove, Emily S. Almberg, Pauline Kamath, Mike Cox, Peregrine L. Wolff, Annette Roug, Justin M. Shannon, Rusty Robinson, Richard B. Harris, Ben J. Gonzales, Raina K. Plowright, Peter J. Hudson, Paul C. Cross, Andrew Dobson, Thomas E. Besser
2018, Journal of Wildlife Management (82) 32-45
Infectious disease was an important driver of historic declines and extirpations of bighorn sheep (Ovis canadensis) in North America and continues to impede population restoration and management. Domestic sheep have long been linked to pneumonia outbreaks in bighorn sheep and this association has now been confirmed in 13 captive...
Divergent migration within lake sturgeon (Acipenser fulvescens) populations: Multiple distinct patterns exist across an unrestricted migration corridor
Steven T. Kessel, Darryl W. Hondorp, Christopher M. Holbrook, James C. Boase, Justin A. Chiotti, Michael V. Thomas, Todd C. Wills, Edward F. Roseman, Richard Drouin, Charles C. Krueger
2018, Journal of Animal Ecology (87) 259-273
Population structure, distribution, abundance, and dispersal arguably underpin the entire field of animal ecology, with consequences for regional species persistence, and provision of ecosystem services. Divergent migration behaviours among individuals or among populations is an important aspect of the ecology of highly-mobile animals, allowing populations to exploit spatially- or temporally-distributed...
Estimating vegetation biomass and cover across large plots in shrub and grass dominated drylands using terrestrial lidar and machine learning
Kyle E. Anderson, Nancy F. Glenn, Lucas P. Spaete, Douglas J. Shinneman, David S. Pilliod, Robert Arkle, Susan K. McIlroy, DeWayne R. Derryberry
2018, Ecological Indicators (84) 793-802
Terrestrial laser scanning (TLS) has been shown to enable an efficient, precise, and non-destructive inventory of vegetation structure at ranges up to hundreds of meters. We developed a method that leverages TLS collections with machine learning techniques to model and map canopy cover and biomass of several classes of short-stature...
At the end of the line: independent overwater colonizations of the Solomon Islands by a hyperdiverse trans-Wallacean lizard lineage (Cyrtodactylus: Gekkota: Squamata)
Paul M. Oliver, Scott L Travers, Jonathan Q. Richmond, Patrick Pikacha, Robert N. Fisher
2018, Zoological Journal of the Linnean Society (182) 681-694
The islands of East Melanesia have generated key insights into speciation processes and community assembly. However, when and how these islands began to form, emerge and accumulate endemic taxa remains poorly understood. Here, we show that two divergent lineages within the world’s most diverse genus of geckos (Cyrtodactylus) occur in...
Overview of a comprehensive resource database for the assessment of recoverable hydrocarbons produced by carbon dioxide enhanced oil recovery
Marshall Carolus, Khosrow Biglarbigi, Peter D. Warwick, Emil D. Attanasi, Philip A. Freeman, Celeste D. Lohr
2018, Techniques and Methods 7-C16
A database called the “Comprehensive Resource Database” (CRD) was prepared to support U.S. Geological Survey (USGS) assessments of technically recoverable hydrocarbons that might result from the injection of miscible or immiscible carbon dioxide (CO2) for enhanced oil recovery (EOR). The CRD was designed by INTEK Inc., a consulting company under...
Coherence between coastal and river flooding along the California coast
Kingsley O. Odigie, Jonathan A. Warrick
2018, Journal of Coastal Research (34) 308-317
Water levels around river mouths are intrinsically determined by sea level and river discharge. If storm-associated coastal water-level anomalies coincide with extreme river discharge, landscapes near river mouths will be flooded by the hydrodynamic interactions of these two water masses. Unfortunately, the temporal relationships between ocean and river water masses...
Research note: Mapping spatial patterns in sewer age, material, and proximity to surface waterways to infer sewer leakage hotspots
Kristina G. Hopkins, Daniel J. Bain
2018, Landscape and Urban Planning (170) 320-324
Identifying areas where deteriorating sewer infrastructure is in close proximity to surface waterways is needed to map likely connections between sewers and streams. We present a method to estimate sewer installation year and deterioration status using historical maps of the sewer network, parcel-scale property assessment data, and pipe material. Areas...
Fine-scale acoustic telemetry reveals unexpected lake trout, Salvelinus namaycush, spawning habitats in northern Lake Huron, North America
Thomas Binder, Steve A. Farha, Henry T. Thompson, Christopher M. Holbrook, Roger A. Bergstedt, Stephen Riley, Charles R. Bronte, Ji He, Charles C. Krueger
2018, Ecology of Freshwater Fish (27) 594-605
Previous studies of lake trout, Salvelinus namaycush, spawning habitat in the Laurentian Great Lakes have used time- and labour-intensive survey methods and have focused on areas with historic observations of spawning aggregations and on habitats prejudged by researchers to be suitable for spawning. As an alternative, we used fine-scale acoustic telemetry...
Groundwater development stress: Global-scale indices compared to regional modeling
William Alley, Brian R. Clark, Matt Ely, Claudia C. Faunt
2018, Groundwater (56) 266-275
The increased availability of global datasets and technologies such as global hydrologic models and the Gravity Recovery and Climate Experiment (GRACE) satellites have resulted in a growing number of global-scale assessments of water availability using simple indices of water stress. Developed initially for surface water, such indices are increasingly used...
Networking our science to characterize the state, vulnerabilities, and management opportunities of soil organic matter
Jennifer W. Harden, Gustaf Hugelius, Anders Ahlstrom, Joseph C. Blankinship, Ben Bond-Lamberty, Corey Lawrence, Julie Loisel, Avni Malhotra, Robert B. Jackson, Stephen M. Ogle, Claire Phillips, Rebecca Ryals, Katherine Todd-Brown, Rodrigo Vargas, Sintana E. Vergara, M. Francesca Cotrufo, Marco Keiluweit, Katherine Heckman, Susan E. Crow, Whendee L. Silver, Marcia DeLonge, Lucas E. Nave
2018, Global Change Biology (24) e705-e718
Soil organic matter (SOM) supports the Earth's ability to sustain terrestrial ecosystems, provide food and fiber, and retains the largest pool of actively cycling carbon. Over 75% of the soil organic carbon (SOC) in the top meter of soil is directly affected by human land use. Large land areas have...
Biomonitoring using invasive species in a large Lake: Dreissena distribution maps hypoxic zones
Alexander Y. Karatayev, Lyubov E. Burlakova, Knut Mehler, Serghei A. Bocaniov, Paris D. Collingsworth, Glenn Warren, Richard T. Kraus, Elizabeth K. Hinchey
2018, Journal of Great Lakes Research (44) 639-649
Due to cultural eutrophication and global climate change, an exponential increase in the number and extent of hypoxic zones in marine and freshwater ecosystems has been observed in the last few decades. Hypoxia, or low dissolved oxygen (DO) concentrations, can produce strong negative ecological impacts and, therefore, is a management...
Identifying species conservation strategies to reduce disease-associated declines
Brian D. Gerber, Sarah J. Converse, Erin L. Muths, Harry J. Crockett, Brittany A. Mosher, Larissa L. Bailey
2018, Conservation Letters (11) 1-10
Emerging infectious diseases (EIDs) are a salient threat to many animal taxa, causing local and global extinctions, altering communities and ecosystem function. The EID chytridiomycosis is a prominent driver of amphibian declines, which is caused by the fungal pathogen Batrachochytrium dendrobatidis (Bd). To guide conservation policy, we developed a predictive decision-analytic model...
Tagging effects of passive integrated transponder and visual implant elastomer on the small-bodied white sands pupfish (Cyprinodon tularosa)
Damon Peterson, Randi B. Trantham, Tulley G. Trantham, Colleen A. Caldwell
2018, Fisheries Research (198) 203-208
One of the greatest limiting factors of studies designed to obtain growth, movement, and survival in small-bodied fishes is the selection of a viable tag. The tag must be relatively small with respect to body size as to impart minimal sub-lethal effects on growth and mobility, as well as be...