Assessment of phytoplankton resources suitable for bigheaded carps in Lake Michigan derived from remote sensing and bioenergetics
Karl R. Anderson, Duane Chapman, Tim T. Wynne, Craig P. Paukert
2017, Journal of Great Lakes Research (43) 90-99
We used bioenergetic simulations combined with satellite-measured water temperature and estimates of algal food availability to predict the habitat suitability of Lake Michigan for adult silver carp (Hypophthalmichthys molitrix) and bighead carp (H. nobilis). Depending on water temperature, we found that bigheaded carp require ambient algal concentrations between 1 and...
A hybrid machine learning model to predict and visualize nitrate concentration throughout the Central Valley aquifer, California, USA
Katherine M. Ransom, Bernard T. Nolan, Jonathan A. Traum, Claudia C. Faunt, Andrew M. Bell, Jo Ann M. Gronberg, David C. Wheeler, Celia Zamora, Bryant C. Jurgens, Gregory E. Schwarz, Kenneth Belitz, Sandra M. Eberts, George Kourakos, Thomas Harter
2017, Science of the Total Environment (601-602) 1160-1172
Intense demand for water in the Central Valley of California and related increases in groundwater nitrate concentration threaten the sustainability of the groundwater resource. To assess contamination risk in the region, we developed a hybrid, non-linear, machine learning model within a statistical learning framework to predict nitrate contamination of groundwater...
Parcels versus pixels: modeling agricultural land use across broad geographic regions using parcel-based field boundaries
Terry L. Sohl, Jordan Dornbierer, Steve Wika, Kristi L. Sayler, Robert Quenzer
2017, Journal of Land Use Science (12) 197-217
Land use and land cover (LULC) change occurs at a local level within contiguous ownership and management units (parcels), yet LULC models primarily use pixel-based spatial frameworks. The few parcel-based models being used overwhelmingly focus on small geographic areas, limiting the ability to assess LULC change impacts at regional to...
Rigorously valuing the role of coral reefs in coastal protection: An example from Maui, Hawaii, U.S.A.
Curt D. Storlazzi, Borja G. Reguero, Erik Lowe, James B. Shope, Ann E. Gibbs, Mike Beck, Barry A. Nickel
2017, Conference Paper, Proceedings of Coastal Dynamics 2017
The degradation of coastal habitats, particularly coral reefs, raises risks by exposing communities to flooding hazards. The protective services of these natural defenses are not assessed in the same rigorous, economic terms as artificial defenses such as seawalls, and therefore often not considered in decision-making. Here we present a new methodology that combines...
Designing a solution to enable agency-academic scientific collaboration for disasters
Lindley A. Mease, Theodora Gibbs-Plessl, Ashley Erickson, K. A. Ludwig, Christopher M. Reddy, Jane Lubchenco
2017, Ecology and Society (22)
As large-scale environmental disasters become increasingly frequent and more severe globally, people and organizations that prepare for and respond to these crises need efficient and effective ways to integrate sound science into their decision making. Experience has shown that integrating nongovernmental scientific expertise into disaster decision making can improve the...
User’s guide for MapMark4—An R package for the probability calculations in three-part mineral resource assessments
Karl J. Ellefsen
2017, Techniques and Methods 7-C14
MapMark4 is a software package that implements the probability calculations in three-part mineral resource assessments. Functions within the software package are written in the R statistical programming language. These functions, their documentation, and a copy of this user’s guide are bundled together in R’s unit of shareable code, which is...
Probability calculations for three-part mineral resource assessments
Karl J. Ellefsen
2017, Techniques and Methods 7-C15
Three-part mineral resource assessment is a methodology for predicting, in a specified geographic region, both the number of undiscovered mineral deposits and the amount of mineral resources in those deposits. These predictions are based on probability calculations that are performed with computer software that is newly implemented. Compared to the...
U-Pb ages and geochemistry of zircon from Proterozoic plutons of the Sawatch and Mosquito ranges, Colorado, U.S.A.: Implications for crustal growth of the central Colorado province
Richard J. Moscati, Wayne R. Premo, Ed Dewitt, Joseph L. Wooden
2017, Rocky Mountain Geology (52) 17-106
A broad study of zircons from plutonic rocks of the Sawatch and Mosquito ranges of west-central Colorado (U.S.A.) was undertaken to significantly refine the magmatic chronology and chemistry of this under-studied region of the Colorado province. This region was chosen because it lies just to the north of the...
Description of gravity cores from San Pablo Bay and Carquinez Strait, San Francisco Bay, California
Donald L. Woodrow, John L. Chin, Florence L. Wong, Theresa A. Fregoso, Bruce E. Jaffe
2017, Open-File Report 2017-1078
Seventy-two gravity cores were collected by the U.S. Geological Survey in 1990, 1991, and 2000 from San Pablo Bay and Carquinez Strait, California. The gravity cores collected within San Pablo Bay contain bioturbated laminated silts and sandy clays, whole and broken bivalve shells (mostly mussels), fossil tube structures, and fine-grained...
Light climate and dissolved organic carbon concentration influence species-specific changes in fish zooplanktivory
Brian Weidel, Katherine Baglini, Stuart E. Jones, Patrick T. Kelly, Christopher T. Solomon, Jacob A. Zwart
2017, Inland Waters (7) 210-217
Dissolved organic carbon (DOC) in lakes reduces light penetration and limits fish production in low nutrient lakes, reportedly via reduced primary and secondary production. Alternatively, DOC and light reductions could influence fish by altering their visual feeding. Previous studies report mixed effects of DOC on feeding rates of zooplanktivorous fish,...
Trace element contamination in feather and tissue samples from Anna’s hummingbirds
Nicole A. Mikoni, Robert H. Poppenga, Joshua T. Ackerman, Janet E. Foley, Jenny Hazlehurst, Guthrum Purdin, Linda Aston, Sabine Hargrave, Karen Jelks, Lisa A. Tell
2017, Ecological Indicators (80) 96-105
Trace element contamination (17 elements; Be, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, As, Se, Mo, Cd, Ba, Hg, Tl, and Pb) of live (feather samples only) and deceased (feather and tissue samples) Anna's hummingbirds (Calypte anna) was evaluated. Samples were analyzed using inductively coupled plasma-mass spectrometry (ICP-MS; 17...
Field-trip guide to subaqueous volcaniclastic facies in the Ancestral Cascades arc in southern Washington State—The Ohanapecosh Formation and Wildcat Creek beds
Martin Jutzeler, Jocelyn McPhie
2017, Scientific Investigations Report 2017-5022-B
Partly situated in the idyllic Mount Rainier National Park, this field trip visits exceptional examples of Oligocene subaqueous volcaniclastic successions in continental basins adjacent to the Ancestral Cascades arc. The >800-m-thick Ohanapecosh Formation (32–26 Ma) and the >300-m-thick Wildcat Creek (27 Ma) beds record similar sedimentation processes from various volcanic...
California Spotted Owl (Strix occidentalis occidentalis) habitat use patterns in a burned landscape
Stephanie Eyes, Susan L. Roberts, Matthew D. Johnson
2017, The Condor (119) 375-388
Fire is a dynamic ecosystem process of mixed-conifer forests of the Sierra Nevada, but there is limited scientific information addressing wildlife habitat use in burned landscapes. Recent studies have presented contradictory information regarding the effects of stand-replacing wildfires on Spotted Owls (Strix occidentalis) and their habitat. While fire promotes heterogeneous...
Water contents of clinopyroxenes from sub-arc mantle peridotites
Michael Turner, Simon Turner, Dawnika L. Blatter, Rene Maury, Michael Perfit, Gene Yogodzinski
2017, Island Arc (26)
One poorly constrained reservoir of the Earth's water budget is that of clinopyroxene in metasomatised, mantle peridotites. This study presents reconnaissance Sensitive High-Resolution, Ion Microprobe–Stable Isotope (SHRIMP–SI) determinations of the H2O contents of (dominantly) clinopyroxenes in rare mantle xenoliths from four different subduction zones, i.e. Mexico, Kamchatka, Philippines, and New...
Essential information: Uncertainty and optimal control of Ebola outbreaks
Shou-Li Li, Ottar Bjornstad, Matthew J. Ferrari, Riley Mummah, Michael C. Runge, Christopher J. Fonnesbeck, Michael J. Tildesley, William J. M. Probert, Katriona Shea
2017, Proceedings of the National Academy of Sciences of the United States of America (114) 5659-5664
Early resolution of uncertainty during an epidemic outbreak can lead to rapid and efficient decision making, provided that the uncertainty affects prioritization of actions. The wide range in caseload projections for the 2014 Ebola outbreak caused great concern and debate about the utility of models. By coding and running 37...
The contribution of lakes to global inland fisheries harvest
Andrew M. Deines, David B. Bunnell, Mark W. Rogers, David Bennion, Whitney Woelmer, Michael J. Sayers, Amanda G. Grimm, Robert A. Shuchman, Zachary B. Raymer, Colin N. Brooks, Justin G. Mychek-Londer, William W. Taylor, Beard Jr.
2017, Frontiers in Ecology and the Environment (15) 293-298
Freshwater ecosystems provide numerous services for communities worldwide, including irrigation, hydropower, and municipal water; however, the services provided by inland fisheries – nourishment, employment, and recreational opportunities – are often comparatively undervalued. We provide an independent estimate of global lake harvest to improve biological and socioeconomic assessments of inland fisheries....
The Neogene genus Streptochilus (Brönnimann and Resig, 1971) from the Gulf of California
A.Y. Miranda Martinez, A.L. Carreno, Kristin McDougall
2017, Marine Micropaleontology (132) 35-52
Four species of the planktonic foraminiferal genus Streptochilus from key Neogene marine localities are documented in relation to the evolution of the Gulf of California: S. globigerus, S. latus, S. macdougallae sp. nov., and S. inglei sp. nov. Planktonic foraminiferal bioevents and strontium isotopes in the Bouse, Tirabuzón, Carmen and...
Optimal hydrograph separation using a recursive digital filter constrained by chemical mass balance, with application to selected Chesapeake Bay watersheds
Jeff P. Raffensperger, Anna C. Baker, Joel D. Blomquist, Jessica A. Hopple
2017, Scientific Investigations Report 2017-5034
Quantitative estimates of base flow are necessary to address questions concerning the vulnerability and response of the Nation’s water supply to natural and human-induced change in environmental conditions. An objective of the U.S. Geological Survey National Water-Quality Assessment Project is to determine how hydrologic systems are affected by watershed characteristics,...
Sedimentology, sequence-stratigraphy, and geochemical variations in the Mesoproterozoic Nonesuch Formation, northern Wisconsin, USA
Esther Kingsbury Stewart, Jeffrey L. Mauk
2017, Precambrian Research (294) 111-132
We use core descriptions and portable X-ray fluorescence analyses to identify lithofacies and stratigraphic surfaces for the Mesoproterozoic Nonesuch Formation within the Ashland syncline, Wisconsin. We group lithofacies into facies associations and construct a sequence stratigraphic framework based on lithofacies stacking and stratigraphic surfaces. The fluvial-alluvial facies association (upper...
In-vitro replication of Chelonid herpesvirus 5 in organotypic skin cultures from Hawaiian green turtles (Chelonia mydas)
Thierry M. Work, Julie Dagenais, Tina Weatherby, George H. Balazs, Mathias Ackermann
2017, Journal of Virology (91)
Fibropapillomatosis (FP) is a tumor disease of marine turtles associated with Chelonid herpesvirus 5 (ChHV5) that has historically been refractory to growth in tissue culture. Here, we show for the first time de novo formation of ChHV5-positive intranuclear inclusions in cultured green turtle cells, which is indicative for active lytic...
Use of electricity to sedate Lake Trout for intracoelomic implantation of electronic transmitters
Matthew D. Faust, Christopher Vandergoot, Eric T. Hostnik, Thomas R. Binder, Julia L. Mida Hinderer, Jessica T. Ives, Charles C. Krueger
2017, North American Journal of Fisheries Management (37) 768-777
Use of telemetry data to inform fisheries conservation and management is becoming increasingly common; as such, fish typically must be sedated before surgical implantation of transmitters into the coelom. Given that no widely available, immediate-release chemical sedative currently exists in North America, we investigated the feasibility of using electricity to...
Using dynamic population simulations to extend resource selection analyses and prioritize habitats for conservation
Julie A. Heinrichs, Cameron L. Aldridge, Michael S. O’Donnell, Nathan Schumaker
2017, Ecological Modelling (359) 449-459
Prioritizing habitats for conservation is a challenging task, particularly for species with fluctuating populations and seasonally dynamic habitat needs. Although the use of resource selection models to identify and prioritize habitat for conservation is increasingly common, their ability to characterize important long-term habitats for dynamic populations are variable. To examine...
Tolerance to disturbance regulated by attractiveness of resources: A case study of desert bighorn sheep within the River Mountains, Nevada
Chris E. Lowrey, Kathleen M. Longshore
2017, Western North American Naturalist (77) 82-98
Human activity may mimic predation risks for wildlife by causing abandonment of foraging sites and increasing expenditure of energy. Animals that can tolerate nonlethal disturbance may minimize these fitness costs. We examine this aspect of the risk—disturbance hypothesis by first analyzing recent habitat use of desert bighorn sheep relative to...
Streamflow alteration at selected sites in Kansas
Kyle E. Juracek, Ken Eng
2017, Scientific Investigations Report 2017-5046
An understanding of streamflow alteration in response to various disturbances is necessary for the effective management of stream habitat for a variety of species in Kansas. Streamflow alteration can have negative ecological effects. Using a modeling approach, streamflow alteration was assessed for 129 selected U.S. Geological Survey streamgages in the...
Highlighting the complexities of a groundwater pilot study during an avian influenza outbreak: Methods, lessons learned, and select contaminant results
Laura E. Hubbard, Dana W. Kolpin, Chad L. Fields, Michelle L. Hladik, Luke R. Iwanowicz
2017, Environmental Research (158) 212-224
The highly pathogenic avian influenza (H5N2) outbreak in the Midwestern United States (US) in 2015 was historic due to the number of birds and poultry operations impacted and the corresponding economic loss to the poultry industry and was the largest animal health emergency in US...