Bankfull shear velocity predicts embeddedness and silt cover in gravel streambeds
Jonathan A. Czuba, Mallory Hirschler, Elizabeth A. Pratt, Amy Villamagna, Paul L. Angermeier
2022, River Research and Applications (38) 59-68
Excess fine sediment (<2 mm) deposition on gravel streambeds can degrade habitat quality for stream biota. Two measures of fine sediment deposition include embeddedness and silt cover (<62.5 μm). Embeddedness measures fine sediment in interstitial pore spaces, whereas silt cover, primarily deposited during low flows, measures fine sediment draped on the streambed's...
Techniques to improve ecological interpretability of black box machine learning models
Thomas Welchowski, Kelly O. Maloney, Richard M. Mitchell, Matthias Schmid
2022, Journal of Agricultural, Biological, and Environmental Statistics (27) 175-197
Statistical modeling of ecological data is often faced with a large number of variables as well as possible nonlinear relationships and higher-order interaction effects. Gradient boosted trees (GBT) have been successful in addressing these issues and have shown a good predictive performance in modeling nonlinear relationships, in particular in classification settings with...
Bayesian modeling can facilitate adaptive management in restoration
Cara Applestein, T. Trevor Caughlin, Matthew J. Germino
2022, Restoration Ecology (30)
There is an urgent need for near-term predictions of ecological restoration outcomes despite imperfect knowledge of ecosystems. Restoration outcomes are always uncertain but integrating Bayesian modeling into the process of adaptive management allows researchers and practitioners to explicitly incorporate prior knowledge of ecosystems into future predictions. Although barriers exist, employing...
Recursive Bayesian computation facilitates adaptive optimal design in ecological studies
Clinton B. Leach, William J. Perry, Joseph M. Eisaguirre, Jamie N. Womble, Michael R. Bower, Mevin Hooten
2022, Ecology (103)
Optimal design procedures provide a framework to leverage the learning generated by ecological models to flexibly and efficiently deploy future monitoring efforts. At the same time, Bayesian hierarchical models have become widespread in ecology and offer a rich set of tools for ecological learning and...
Quantifying the stormwater runoff volume reduction benefits of urban street tree canopy
William R. Selbig, Steven P. Loheid II, William Schuster, Bryant C. Scharenbroch, Robert C. Coville, James Kruegler, William Avery, Ralph J. Haefner, David Nowak
2022, Science of the Total Environment (806)
Trees in the urban right-of-way areas have increasingly been considered part of a suite of green infrastructure practices used to manage stormwater runoff. A paired-catchment experimental design (with street tree removal as the treatment) was used to assess how street trees affect major hydrologic fluxes in a typical residential stormwater...
Accuracy of histology, endoscopy, ultrasonography, and plasma sex steroids in describing the population reproductive structure of hatchery-origin and wild white sturgeon
Paige A. C. Maskill, James A. Crossman, Molly A. H. Webb, Marco M. Marrello, Christopher S. Guy
2022, Journal of Applied Ichthyology (38) 3-16
Hatchery-origin white sturgeon Acipenser transmontanus in the lower Columbia River, Canada are approaching puberty, and describing the reproductive structure of the population is critical to determine if they are capable of contributing to spawning events in the wild, a key management uncertainty. Few studies have compared the accuracy of available tools (histology,...
Tracking the desert's edge with a Pleistocene relict
Benjamin T. Wilder, Amanda T. Becker, Adrian Munguia-Vega, Melanie Culver
2022, Journal of Arid Environments (196)
In addition to the Sky Islands of the southwestern U.S. and northwestern Mexico, a series of 900–1200 m desert peaks surrounded by arid lowlands support temperate affiliated species at their summits. The presence of disjunct long-lived plant taxa on under-explored desert mountains, especially Isla Tiburón at 29° latitude in the Gulf of California, suggests a more...
Tectonic influence on axial-transverse sediment routing in the Denver Basin
Glenn R Sharman, Daniel F. Stockli, Peter Flaig, Robert Raynolds, Marieke Dechesne, Jacob A Covault
2022, Book chapter, Tectonic evolution of the Sevier-Laramide hinterland, thrust belt, and foreland, and postorogenic slab rollback (180–20 Ma)
Detrital zircon U-Pb and (U-Th)/He ages from latest Cretaceous–Eocene strata of the Denver Basin provide novel insights into evolving sediment sourcing, recycling, and dispersal patterns during deposition in an intracontinental foreland basin. In total, 2464 U-Pb and 78 (U-Th)/He analyses of detrital zircons from 21 sandstone samples are presented from...
The role of preexisting upper plate strike-slip faults during long-lived (ca. 30 Myr) oblique flat slab subduction, southern Alaska
Trevor Waldien, Richard O. Lease, Sarah Roeske, Jeff Benowitz, Paul O'Sullivan
2022, Earth and Planetary Science Letters (557)
Upper plates of subduction zones commonly respond to flat slab subduction by structural reactivation, magmatic arc disruption, and foreland basin inversion. However, the role of active strike-slip faults in focusing convergent deformation and magmatism in response to oblique flat slab subduction remains...
Sediment-ecological connectivity in a large river network
John T. Kemper, R. D. Thaxton, Sara L. Rathburn, Jonathan M. Friedman, Erich R. Mueller, Michael L. Scott
2022, Earth Surface Processes and Landforms (47) 639-657
Sediment eroded from the headwaters of a large basin strongly influences channels and ecosystems far downstream, but the connection is often difficult to trace. Disturbance-dependent riparian trees are thought to rely primarily on floods for formation of the sand bars necessary for seedling establishment, but pulses of sediment should also...
Next-generation lampricides: A three-stage process to develop improved control tools for invasive sea lamprey
Steve Lantz, Bob Adair, Jon Amberg, Roger A. Bergstedt, Michael A. Boogaard, Ugo Bussy, Margaret F. Docker, Erin S. Dunlop, Alex Gonzalez, Terrance Hubert, Michael J. Siefkes, Paul Sullivan, Steve Whyard, Michael P. Wilkie, Bradley Young, Andrew M. Muir
2022, Canadian Journal of Fisheries and Aquatic Sciences (79) 692-702
Successful integrated management of the invasive predatory sea lamprey (Petromyzon marinus) in the Laurentian Great Lakes of North America is owed largely to the long history of beneficial use of two lampricides: 3-trifluoromethyl-4-nitrophenol (TFM) and 2′,5-dichloro-4′-nitrosalicylanilide (niclosamide). Ensuring continued successful sea lamprey control necessitates consideration of possible next-generation lampricides to...
Experiences in LP-IoT: EnviSense deployment of remotely reprogrammable environmental sensors
Reese Grimsley, Mathieu D. Marineau, Robert A. Iannucci
2022, Conference Paper, LP-IoT '21: Proceedings of the 1st ACM Workshop on No Power and Low Power Internet-of-Things
The advent of Low Power Wide Area Networks (LPWAN) has improved the feasibility of wireless sensor networks for environmental sensing across wide areas. We have built EnviSense, an ultra-low power environmental sensing system, and deployed over a dozen of them across two locations in Northern California for hydrological monitoring applications...
Temperature-based modeling of incubation period to protect loggerhead hatchlings on an urban beach in Northwest Florida
Kennard P. Watson, Margaret Lamont
2022, Journal of Experimental Marine Biology and Ecology (546)
Sea turtle hatchlings face many natural and anthropogenic threats during their short journey to the water after emerging from nests. Reducing hatchling mortality is critical to population recovery of imperiled sea turtle species; however, protecting hatchlings is particularly challenging on beaches degraded by human development and disturbances, including artificial lighting. Managers...
Ontogeny of eDNA shedding during early development in Chinook Salmon (Oncorhynchus tshawytscha)
Carl Ostberg, Dorothy M. Chase
2022, Environmental DNA (4) 339-348
Knowledge of the timing of major life history events in aquatic species is important for informing conservation and resource management planning. Accordingly, surveys of environmental DNA (eDNA) have been performed to determine the efficacy of eDNA for providing information on life history events, primarily focusing on...
Fatty acid profiles of feeding and fasting bears: Estimating calibration coefficients, the timeframe of diet estimates, and selective mobilization during hibernation
Gregory W. Thiemann, Karyn D. Rode, Joy A Erlenbach, Suzanne Budge, Charles T. Robbins
2022, Journal of Comparative Physiology B: Biochemical, Systemic, and Environmental Physiology (192) 379-395
Accurate information on diet composition is central to understanding and conserving carnivore populations. Quantitative fatty acid signature analysis (QFASA) has emerged as a powerful tool for estimating the diets of predators, but ambiguities remain about the timeframe of QFASA estimates and the need to account for...
Biodiversity–productivity relationships in a natural grassland community vary under diversity loss scenarios
Qingmin Pan, Amy Symstad, Yongfei Bai, Jianhui Huang, Jianguo Wu, Shahid Naeem, Dima Chen, Dashuan Tian, Qibing Wang, Xingguo Han
2022, Journal of Ecology (110) 210-220
Understanding the biodiversity–productivity relationship and underlying mechanisms in natural ecosystems under realistic diversity loss scenarios remains a major challenge for ecologists despite its importance for predicting impacts of rapid loss of biodiversity worldwide. Here we report the results of a plant functional group (PFG) removal experiment conducted on the...
Recruitment bottlenecks for age-0 walleye in northern Wisconsin lakes
Jason Gostiaux, Hadley I. A. Boehm, Nathan J. Jaksha, Daniel J. Dembkowski, Joseph M. Hennessy, Daniel A. Isermann
2022, North American Journal of Fisheries Management (42) 507-522
Some northern Wisconsin lakes have shown declines in catches of age-0 Walleye Sander vitreus in standardized fall electrofishing sampling, suggesting that recruitment bottlenecks are occurring in the first several months of life. In 2016 and 2017, we sampled six lakes with declining trends in natural Walleye recruitment (D-NR lakes) and seven lakes...
Activity-based, genome-resolved metagenomics uncovers key populations and pathways involved in subsurface conversions of coal to methane
Luke J. McKay, Heidi J. Smith, Elliott Barnhart, Hannah S. Schweitzer, Rex R. Malmstrom, Danielle Goudeau, Matthew W. Fields
2022, The ISME Journal (16) 915-926
Microbial metabolisms and interactions that facilitate subsurface conversions of recalcitrant carbon to methane are poorly understood. We deployed an in situ enrichment device in a subsurface coal seam in the Powder River Basin (PRB), USA, and used BONCAT-FACS-Metagenomics to identify translationally active populations involved in methane generation from a variety...
Density structure of the island of Hawai’i and the implications for gravity-driven motion of the south flank of Kilauea volcano
Roger P. Denlinger, Ashton F. Flinders
2022, Geophysical Journal International (228) 1793-1807
The discovery that large landslides dissected the Hawaiian islands, scattering debris over thousands of square kilometers of seafloor, changed our ideas of island growth and evolution. The evidence is consistent with catastrophic flank collapse during volcano growth, and draws our focus to the currently active island of Hawai’i, the volcanoes...
Modeling seismic network detection thresholds using production picking algorithms
David C. Wilson, Emily Wolin, William L. Yeck, Robert E. Anthony, Adam T. Ringler
2022, Seismological Research Letters (93) 149-160
Estimating the detection threshold of a seismic network (the minimum magnitude earthquake that can be reliably located) is a critical part of network design and can drive network maintenance efforts. The ability of a station to detect an earthquake is often estimated by assuming the...
Snow depth retrieval with an autonomous UAV-mounted software-defined radar
S. Prager, Graham A. Sexstone, Daniel J McGrath, John W, Fulton, Mahta Moghaddam
2022, Transactions on Geoscience and Remote Sensing (TGARS) (60)
We present results from a field campaign to measure seasonal snow depth at Cameron Pass, Colorado, using a synthetic ultrawideband software-defined radar (SDRadar) implemented in commercially available Universal Software Radio Peripheral (USRP) software-defined radio hardware and flown on a small hexacopter unmanned aerial vehicle (UAV). We...
From site to system: Approaches for producing system-wide estimates of fish habitat in large rivers
H. E. Robinson, Mark J. Henderson, Russell Perry, Damon H. Goodman, Nicholas A. Som
2022, River Research and Applications (38) 1192-130
Worldwide, many productive rivers are dam-regulated and rely on flow management strategies that must balance support of ecological processes with human water use. One component of evaluating this balance is to understand ecological consequences of alternative flow management strategies, which has often been accomplished by coupling...
A new approach for representing agent-environment feedbacks: Coupled agent-based and state-and-transition simulation models
Brian W. Miller, Leonardo Frid
2022, Landscape Ecology (37) 43-58
ContextAgent-based models (ABMs) and state-and-transition simulation models (STSMs) have proven useful for understanding processes underlying social-ecological systems and evaluating practical questions about how systems might respond to different scenarios. ABMs can simulate a variety of agents (autonomous units, such as wildlife or people); agent characteristics, decision-making, adaptive behavior,...
Can the impact of canopy trees on soil and understory be altered using litter additions?
Stephanie G. Yelenik, Evan M Rehm, Carla M. D’Antonio
2022, Ecological Applications (32)
Trees can have large effects on soil nutrients in ways that alter succession, particularly in the case of nitrogen-(N)-fixing trees. In Hawaiʻi, forest restoration relies heavily on use of a native N-fixing tree, Acacia koa (koa), but this species increases soil-available N and likely facilitates competitive dominance of...
Central-West Siberian-breeding Bar-tailed Godwits (Limosa lapponica) segregate in two morphologically distinct flyway populations
Roeland A. Bom, Jesse R. Conklin, Yvonne I. Verkuil, Jose A. Alves, Jimmy De Fouw, Anne Dekinga, Chris J. Hassell, Raymond H. G. Klaassen, Eldar Rakhimberdiev, Andy Y. Kwarteng, Afonso Rocha, Job ten Horn, T. Lee Tibbitts, Pavel S. Tomkovich, Reginald Victor, Theunis Piersma
Zhijun Ma, editor(s)
2022, Ibis (164) 468-485
Long-distance migratory species often include multiple breeding populations, with distinct migration routes, wintering areas and annual-cycle timing. Detailed knowledge on population structure and migratory connectivity provides the basis for studies on the evolution of migration strategies and for species conservation. Currently, five subspecies of Bar-tailed Godwits Limosa...