Python Hyperspectral Analysis Tool (PyHAT) user guide
Ryan B. Anderson, Itiya P. Aneece, Travis S.J. Gabriel
2025, Open-File Report 2025-1038
This report is a user guide for the 0.1.2 release of the Python Hyperspectral Analysis Tool (PyHAT) and its graphical user interface (GUI). The GUI is intended to provide an intuitive front end to allow users to apply sophisticated preprocessing and analysis methods to spectroscopic data. Though the PyHAT package...
Geologic framework and hydrostratigraphy of the Edwards and Trinity aquifers within Hays County, Texas
Allan K. Clark, Robert R. Morris, Alexis P. Lamberts
2025, Scientific Investigations Map 3540
During 2023–24, the U.S. Geological Survey, in cooperation with the Edwards Aquifer Authority, revised a previous publication of the geologic framework and hydrostratigraphy of the Edwards and Trinity aquifers that was completed during 2018 within Hays County, Texas. The purpose of this report is to present the updated geologic framework...
Near-surface material and topography generate anomalous high-frequency ground motion amplification in Chugiak, Alaska
Te-Yang Yeh, Kim B. Olsen, Jamison Haase Steidl, Peter J. Haeussler
2025, Bulletin of the Seismological Society of America (115) 2793-2808
An ∼3 km long nodal array oriented approximately east–west was deployed in Chugiak, Alaska, by the U.S. Geological Survey during 2021. The array intersects with the permanent NetQuakes station NP.ARTY, where peak ground acceleration (PGA) value of 1.98g was recorded during the 2018 Mw 7.1 Anchorage, Alaska, earthquake, in sharp contrast to...
Using periodic matrix models to simulate the effectiveness of alternative reintroduction strategies for lizards on a seasonal tropical island
Jonathan P. Rose, Brian Halstead, Melia G. Nafus
2025, Animal Conservation
Conservation translocations and reintroductions are widely used to improve conservation outcomes for declining species. Reintroductions are unlikely to be successful if the threats that led to the extirpation of the focal species, such as non-native predators, have not been ameliorated. The non-native brown treesnake (Boiga irregularis) was introduced to Guam...
The bat signal: An ultraviolet light lure to increase acoustic detection of bats
Samuel R. Freeze, Sabrina M. Deeley, Amber S. Litterer, J. Mark Freeze, W. Mark Ford
2025, Animals (15)
Bats are a taxa of high conservation concern and are facing numerous threats including widespread mortality due to White-Nose Syndrome (WNS) in North America. With this decline comes increasing difficulty in monitoring imperiled bat species due to lower detection probabilities of both mist-netting and acoustic surveys. Lure...
Spatial mapping of dissolved methane using an in situ sensor in Puget Sound
Alexandra M. Padilla, William Pardis, Jason Kapit, Tor A. Bjorklund, Nicholas D. Ward, Daniel J. Fornari, Susan Hautala, William F. Waite, H. Paul Johnson, Anna P. Michel
2025, Limnology and Oceanography Methods (23) 804-814
Release of methane, as gas bubbles or in the dissolved phase, from the seafloor has been observed in coastal waters (< 200 m) and deep ocean basins (> 1000 m). Methane dissolution within the water column affects the geochemistry of the surrounding water, leading to localized oxygen loss and potential escape to the atmosphere,...
Home range, seasonality, and the importance of canopy cover for Texas Tortoises (Gopherus berlandieri)
Daniel A. Guerra, Todd C. Esque, Drew R. Davis, Joseph A. Veech
2025, Herpetologica (81) 224-235
Texas Tortoises (Gopherus berlandieri) are understudied compared to federally protected congeners. Despite important early studies on the basic ecology of G. berlandieri, quantitative identification of habitat associations with specific environmental conditions has been limited. Gopherus berlandieri inhabits Tamaulipan thornscrub across its range, and coastal populations are historically associated with low-relief clay ridges with...
Revised marine bird collision and displacement vulnerability index for U.S. Pacific Outer Continental Shelf offshore wind energy development
Emma C. Kelsey, Jonathan J. Felis, David M. Pereksta, Josh Adams
2025, Data Report 1214
The installation of offshore wind energy infrastructure (OWEI) at sea may affect marine birds by increasing the risk of mortality from collision with OWEI (Collision Vulnerability) and causing disturbance and displacement from important habitats (Displacement Vulnerability). In 2017, we published the first comprehensive database quantifying marine bird Collision Vulnerability and...
Collaborative drought science planning in the Colorado River Basin
Patrick J. Anderson, Jeanne E. Godaire, Daniel K. Jones, William J. Andrews, Alicia A. Torregrosa, Meghan T. Bell, JoAnn M. Holloway, Molly A. Blakowski, Joseph A. Hevesi, Sharon L. Qi
2025, Open-File Report 2025-1041
The U.S. Geological Survey (USGS) is using collaborative, interdisciplinary planning to develop data and tools needed to optimize the management of water resources and land use by resource management agencies during an ongoing, multidecadal drought in the Colorado River Basin. The USGS Actionable and Strategic Integrated Science and Technology team...
Gravity and magnetic surveys of the Skaergaard intrusion, East Greenland
Mark E. Gettings
2025, Open-File Report 2025-1030
Aeromagnetic and gravity surveys of the Skaergaard intrusion in East Greenland were carried out in July–August 1971 as part of a grant to the University of Oregon Center for Volcanology to refine the models of crystallization and differentiation of the intrusion, specifically to test whether the intrusion is underlain by...
The story of the Penobscot River Ecology Mural: A 10-step process for scientists to create public art
Jillian Fedarick, Christina Amy Murphy, Sydne Record, Allison H. Roy, Annette Dodd, Susan L. Smith
2025, Fisheries
Rivers are home to a wide variety of biota, including fishes, amphibians, reptiles, birds, freshwater mussels, aquatic insects, and microscopic organisms that fill unique niches to support broader ecosystem functions. While the general public may be aware of recreationally relevant biological life (e.g., fishes and insects to model flyfishing flies...
Development of PCR blocking primers enabling DNA metabarcoding analysis of dietary composition in hematophagous sea lamprey
Conor O'Kane, Nicholas S. Johnson, Kim T. Scribner, Jeannette Kanefsky, Weiming Li, John D. Robinson
2025, Ecology and Evolution (15)
Conventional dietary assessments are challenging in hematophagous species, particularly in sea lamprey (Petromyzon marinus). However, recent technological developments and molecular approaches have provided an attractive alternative through the use of DNA metabarcoding. While DNA metabarcoding has been used for dietary analyses in numerous species, including lampreys, applications of universal primers...
Divergent trends in fluvial suspended-sediment concentrations following improved land-use practices, southwest Washington State
Scott W Anderson, Christopher A. Curran, Oscar Wilkerson, Katie Seguin
2025, Geomorphology (488)
Improvements in logging practices since the mid-20th century are widely presumed to have reduced suspended sediment loads in streams across the Pacific Northwest. However, there have been few opportunities to directly assess this, particularly in larger rivers. We compare modern (2019–22) and historical (1960s) suspended sediment monitoring in three large,...
Assessment of undiscovered conventional oil and gas resources in Mexico, Belize, and Guatemala, 2024
Christopher J. Schenk, Tracey J. Mercier, Phuong A. Le, Andrea D. Cicero, Ronald M. Drake II, Sarah E. Gelman, Jane S. Hearon, Benjamin G. Johnson, Jenny H. Lagesse, Heidi M. Leathers-Miller, Kira K. Timm
2025, Fact Sheet 2025-3040
Using a geology-based assessment methodology, the U.S. Geological Survey estimated undiscovered, technically recoverable mean conventional resources of 14.6 billion barrels of oil and 83.7 trillion cubic feet of gas in Mexico, Belize, and Guatemala. ...
Airborne geophysics for geologic mapping of critical mineral systems in the United States southern midcontinent
Chelsea Morgan Amaral, Anne E. McCafferty, Dylan Mark Connell
2025, Conference Paper, Geologic Mapping Forum 24/24 abstracts
The increased demand for clean energy technology and a significant reliance on foreign supply chains have given impetus to understanding critical mineral systems and locating potential resources within the United States. At least thirteen critical mineral-bearing systems have been identified throughout the U.S. southern Midcontinent (Hofstra and Kreiner, 2020) but...
Invasive hitchhiking organisms on aquarium plants: An emerging pathway of introduction
Kathryn A. O'Shaughnessy, Wesley Daniel, Zoey C.W. Hendrickson, Samantha N. Smith, Ashley M. McDonald, Charles W. Martin
2025, Management of Biological Invasions (16) 879-893
The aquarium trade is a global industry responsible for the movement of live plants and animals, but it also serves as a major pathway for the introduction and spread of aquatic invasive species. Invasive species contribute to biodiversity loss, disrupt ecosystems, and can have widespread economic and societal impacts. A...
A compilation pipeline for wildlife tracking datasets collected from ground-based and satellite-based telemetry transmission devices
Gregory T. Wann, Ashley L. Whipple, Michael S. O’Donnell, Cameron L. Aldridge
2025, Ecological Informatics (90)
Wildlife conservation planning increasingly requires collaboration and integration of research from discrete studies spanning large geographic areas. Tracking datasets are essential for analyzing animal movements and species distributions in relation to environmental conditions and combining them can enable powerful analyses to further aid planning efforts. However, combining datasets necessitates addressing variation in study...
Assessing policy effectiveness trends in nonindigenous aquatic species introduction in the Ohio River basin
Abigail N. Clasgens, Brent A. Murry, Kaylyn Zipp, Caroline C. Arantes, Matthew Neilson
2025, Management of Biological Invasions (16) 943-959
Aquatic invasive species (AIS) create costly, detrimental effects when established. Recognition of this in the United States reached a threshold in 1990 with the federal passage of the Nonindigenous Aquatic Nuisance Prevention and Control Act. This act created six regional panels, the national Aquatic Nuisance Species Task Force, and incentivized...
Improved prediction of postfire debris flows through rainfall anomaly maps
David B. Cavagnaro, Scott W. McCoy, Matthew A. Thomas, Jaime Kostelnik, Donald N. Lindsay
2025, Geophysical Research Letters (52)
Predicting where runoff-generated debris flows might occur during rainfall on steep, recently burned terrain is challenging. Studies of mass-movement processes in unburned areas indicate that event locations are well-predicted by rainfall anomaly, R*, in which peak observed rainfall is normalized by local rainfall climatology. Here, we use remote and field methods...
Estimating the hypothetical endowment of critical minerals and other commodities in porphyry copper mine waste in the Four Corners states, USA
Sean Patrick Gaynor, Nick Karl, Autumn Lynne Helfrich, Andrew Francis Smith, Jeffrey L. Mauk
2025, Conference Paper, Geologic Mapping Forum 24/25 abstracts
Society is fundamentally dependent upon commodities that are used in end-use products for the aerospace, defense, energy, telecommunication, and transportation sectors, resulting in centuries of mining to supply these commodities and materials. Waste from these mining operations can remain on the landscape indefinitely, but there is a lack of national...
Potomac Tributary Summary: A summary of trends in tidal water quality and associated factors, 1985 - 2022
Breck Maura Sullivan, Kaylyn Gootman, Alex Gunnerson, Sarah Betts, Gabriel Duran, Cindy Johnson, Christopher A. Mason, Elgin Perry, Gopal Bhatt, Jennifer L. Keisman, James S. Webber, Jon Harcum, Michael Lane, Olivia Devereux, Qian Zhang, Rebecca Murphy, Renee Karrh, Thomas Butler, Zhaoying Wei
2025, Report
The Potomac Tributary Summary outlines change over time for a suite of monitored tidal water quality parameters and associated potential drivers of those trends for the period of 1985 to 2022, and provides a brief description of the current state of knowledge explaining these observed changes. Water quality parameters described...
Shifts in suitability of pinyon-juniper communities: A climate adaptation framework for range-wide management of arid woodland resources
Adam Roy Noel, Daniel Rodolphe Schlaepfer, Ian P. Barrett, Michael C. Duniway, Jodi R. Norris, Chris T. Domschke, Brad J. Butterfield, Megan C. Swan, Kim Hartwig, Michelle R. Crist, John B. Bradford
2025, Forest Ecology & Management (596)
Pinyon-juniper (PJ) woodlands are a diverse ecosystem type providing a wealth of ecosystem services across western North America. Managing PJ woodlands in the 21st century entails balancing multiple conservation objectives, and resource managers and policy-makers working to sustain PJ woodlands need spatially explicit information about current PJ woodland conditions and...
Revisiting an enigma on California's north coast: The Mw6.5 Fickle Hill earthquake of 21 December 1954
Margaret Hellweg, Thomas A. Lee, Douglas S. Dreger, Anthony Lomax, Lijam Hagos, Hamid Haddabi, Robert C. McPherson, Lori Dengler, Susan E. Hough, Jason R. Patton
2025, Bulletin of the Seismological Society of America (115) 2623-2639
Many earthquakes occur along the North Coast of California in the vicinity of the Mendocino Triple Junction (MTJ), where the Pacific, Gorda, and North American (NA) plates meet, and on the adjacent plate boundaries. The MTJ marks the nexus of the Mendocino and San Andreas faults with the Cascadia subduction...
Evaluation of daily stream temperature predictions (1979-2021) across the contiguous United States using a spatiotemporal aware machine learning algorithm
Jeremy Alejandro Diaz, Samantha K. Oliver, Galen Gorski
2025, Environmental Modelling & Software (193)
Stream temperature controls a variety of physical and biological processes that affect ecosystems, human health, and economic activities. We used 42 years (1979–2021) of data to predict daily summary statistics of stream temperature across >50,000 stream reaches in the contiguous United States using a recurrent graph convolution network. We comprehensively...
Avian influenza spillover into poultry: Environmental influences and biosecurity protections
Matthew Brandon Gonnerman, Jennifer Mullinax, Andrew Fox, Kelly A. Patyk, Victoria Fields, Mary-Jane McCool, Mia K. Torchetti, Kristina Lantz, Jeffery D. Sullivan, Diann J. Prosser
2025, One Health (21)
With the continued spread of highly pathogenic avian influenza (HPAI), understanding the complex dynamics of virus transfer at the wild – agriculture interface is paramount. Spillover events (i.e., virus transfer from wild birds into poultry) are related to proximity to infected wild bird populations and environmental conditions. By accounting for...