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Not all publications have extents, not all extents are completely accurate
Exploring the importance of metapopulation dynamics with population control strategies for invasive silver carp in the upper Mississippi River
Kassidy Frame, Gregory J. Sandland, Charles J. Labuzzetta, Grace L. Loppnow, Jessica C. Stanton, Yu-Chun Kao, Richard A. Erickson
2025, Journal of Wildlife Management (89)
Invasive bigheaded carps (Bighead Carp Hypophthalmichthys nobilis, Silver Carp Hypophthalmichthys molitrix, and their hybrids Hypophthalmichthys spp.) currently infest the Mississippi River Basin. Bigheaded carps can outcompete native species in invaded waters and can also transform the surrounding environment. Currently, resource managers seek to limit the population abundance of bigheaded carps and their range expansion...
Bioaccumulation and transfer of per- and polyfluoroalkyl substances (PFAS) in a stream and riparian food web contaminated by food processing wastewater
Christopher James Kotalik, Laura E. Hubbard, Brittany G. Perrotta, David M. Walters, Dana W. Kolpin, James L. Gray, Alison M. Zachritz, Johanna M. Kraus, Carrie E. Givens, Gary A. Lamberti, Karen A. Kidd
2025, Environmental Science & Technology (59) 19444-19456
We evaluated the bioaccumulation and transfer of per- and polyfluoroalkyl substances (PFAS) in a stream food web contaminated by a food processing facility. Abiotic (i.e., water, sediment, and foam) and biotic (i.e., algae, aquatic insect larvae and adults, fish, and riparian spiders) matrices were sampled upstream and downstream of the...
The U.S. Geological Survey, the U.S. Department of Defense, and the U.S. Intelligence Community—100 years of mapping and remote sensing collaboration, 1879–1979
Paul M. Young
2025, Circular 1552
IntroductionThe U.S. Geological Survey (USGS)—a Federal civilian agency—and U.S. military and intelligence agencies collaborate on mapping and remote sensing and have since the establishment of the USGS. The organizations exchange data and information and share technology to further their respective missions in service to the American people. Often referred to...
Clarifying the trophic state concept to advance macroscale freshwater science and management
Michael Frederick Meyer, Benjamin M. Kraemer, Carolina C. Barbosa, Davi G.F. Cuhna, Walter Dodds, Stephanie E. Hampton, César Ordóñez, Rachel M. Pilla, Amina Pollard, Joshua A. Culpepper, Alexander K. Fremier, Tyler V. King, Robert Ladwig, Dina M. Leech, Shin-Ichiro S. Matsuzaki, Isabella Oleksy, Simon N. Topp, Richard Woolway, Ludmila S Brighenti, Kate Colleen Fickas, Brian P. Lanouette, Jianning Ren, Mortimer Werther, Xiao Yang
2025, Ecosphere (16)
For over a century, ecologists have used the concept of trophic state (TS) to characterize an aquatic ecosystem's biological productivity. However, multiple TS classification schemes, each relying on a variety of measurable parameters as proxies for productivity, have emerged to meet use-specific needs. Frequently, chlorophyll a, phosphorus, and Secchi depth...
Variation in gene expression across infection status and elevation in a Hawaiian honeycreeper
Loren Cassin-Sackett, Katherine Maria McClure, Taylor Callicrate, Eben H. Paxton, Robert C. Fleischer
2025, Ecology and Evolution (15)
Introduced pathogens exert novel selection on hosts, and although many host species have experienced drastic population declines in the absence of adaptation, some hosts have adapted to highly virulent pathogens. For instance, mosquitoes and Plasmodium relictum introduced to the Hawaiian Islands have resulted in extinctions and catastrophic population declines due to avian...
Assessment of natural gas pipeline construction on stream temperature and turbidity in southwestern Virginia, 2017—25
Brendan M. Foster, Carly Marcella Maas, Alejandra Logan Flota
2025, Preprint
The natural gas pipeline network in the United States is extensive and often intersects streams and other sensitive habitats, yet there are limited case studies utilizing a comparative upstream-downstream approach to evaluate potential short- and long-term effects of pipeline stream crossing construction from pre-construction to post-site restoration. In 2017, the...
An integrated sensor network and data driven approach to satellite remote sensing of dissolved organic matter
Dulcinea Marie Avouris, Erin L Hestir, Jacob Fleck, Jeffrey A. Hansen, Brian A. Bergamaschi
2025, Earth and Space Science (12)
Traditional remote sensing retrieval models for water quality have historically relied on limited, localized data sets due to the prohibitive costs of extensive field campaigns and logistical challenges of collecting match-up data with satellite overpasses. As a result, these models often lack generalizability across seasons, tides, and sites. Furthermore, small...
Impacts of lake elevation decline on spawning habitat of a critical, native forage species
Sarah Barnes, Robert Al-Chokhachy, Phaedra Budy
2025, Transactions of the American Fisheries Society (154) 640-656
ObjectiveLake elevation decline is a global phenomenon with pronounced effects in arid regions that changes the characteristics of nearshore habitat area available to lacustrine spawners, potentially impacting recruitment and whole-lake food web dynamics. Our objective was to understand the potential effects of lake elevation decline on spawning habitat for the...
Clarifying the trophic state concept to advance macroscale freshwater science and management
Michael Frederick Meyer, Benjamin M. Kraemer, Carolina C. Barbosa, Davi G.F. Cuhna, Walter Dodds, Stephanie E. Hampton, César Ordóñez, Rachel M. Pilla, Amina Pollard, Joshua A. Culpepper, Alexander K. Fremier, Tyler V. King, Robert Ladwig, Dina M. Leech, Shin-Ichiro S Matsuzaki, Isabella Oleksy, Simon N. Topp, R. Iestyn Woolway, Ludmila S. Brighenti, Kate Fickas, Brian P. Lanouette, Jianning Ren, Mortimer Werther, Xiao Yang
2025, Ecosphere (16)
For over a century, ecologists have used the concept of trophic state (TS) to characterize an aquatic ecosystem's biological productivity. However, multiple TS classification schemes, each relying on a variety of measurable parameters as proxies for productivity, have emerged to meet use-specific needs. Frequently, chlorophyll a, phosphorus, and Secchi depth...
Grammar to graph—An approach for semantic transformation of annotations to triples
Dalia E. Varanka, Emily Abbott
2025, Scientific Investigations Report 2025-5064
Data annotation is the process of labeling data to show the outcome that a related data model should predict. In this study, annotation data were transformed into semantic graph triples, mainly for use with the Resource Description Framework (RDF), a type of entity-relationship-attribute data model for graph databases. The transformation...
Manipulation of the Symbiodiniaceae microbiome confers multigenerational impacts on symbioses and reproductive ecology of its Exaiptasia diaphana host
Mark Mccauley, Federica Montesanto, Samuel A. Bedgood, Cody Miner, Keyla Plichon, Virginia M. Weis, Sandra Loesgen
2025, The ISME Journal (19)
Symbiodiniaceae-associated microbiota strongly influence cnidarian symbioses. We systematically reduced the bacterial and fungal communities associated with Symbiodiniaceae to study potential effects on the cnidarian holobiont Exaiptasia diaphana (Aiptasia). Clonal anemones were inoculated with xenic Breviolum minutum (SSB01) and microbiome-manipulated cultures after antibacterial or antifungal treatment. The asexual reproduction of pedal laceration allowed for three...
Satellite tracking reveals heavy use of local MPAs by green turtles (Chelonia mydas) nesting in southeast Florida, USA
Glenn D. Goodwin, Kristen Hart, Abby C. Evans, Derek A. Burkholder
2025, Marine Biology (172)
Florida hosts a regionally important nesting aggregation of green turtles (Chelonia mydas) in the North Atlantic, yet internesting and post-nesting movements for this rookery remain poorly understood. Here, we used satellite telemetry to track 23 green turtles nesting on southeast Florida beaches from 2017 to 2021 to investigate their spatial...
A scientific vision and roadmap for earthquake rupture forecast developments, a USGS perspective
Edward H. Field, Alexandra Elise Hatem, Bruce E. Shaw, Morgan T. Page, P. Martin Mai, Kevin Ross Milner, Andrea L. Llenos, Andrew J. Michael, Frederick Pollitz, Jessica Ann Thompson Jobe, Thomas E. Parsons, Olaf Zielke, David R. Shelly, Alice-Agnes Gabriel, Devin McPhillips, Richard W. Briggs, Elizabeth S. Cochran, Nico Luco, Mark D. Petersen, Peter M. Powers, Justin Rubinstein, Allison Shumway, Nicholas van der Elst, Yuehua Zeng, Christopher DuRoss, Jason M. Altekruse
2025, Bulletin of the Seismological Society of America (115) 2523-2552
We articulate a scientific vision and roadmap for the development of improved Earthquake Rupture Forecast models, which are one of the two main modeling components used in modern seismic hazard and risk analysis. One primary future objective is to provide fully time-dependent models that include both elastic rebound and...
ECCOE Landsat quarterly calibration and validation report—Quarter 1, 2025
Md Obaidul Haque, Nahid Hasan, Ashish Shrestha, Rajagopalan Rengarajan, Mark Lubke, Daniel Steinwand, Paul Bresnahan, Jerad L. Shaw, Kathryn Ruslander, Esad Micijevic, Michael J. Choate, Cody Anderson, Jeff Clauson, Kurt Thome, Ed Kaita, Amit Angal, Raviv Levy, Jeff Miller, Leibo Ding, Cibele Teixeira Pinto
2025, Open-File Report 2025-1048
Executive Summary The U.S. Geological Survey Earth Resources Observation and Science Calibration and Validation (Cal/Val) Center of Excellence (ECCOE) focuses on improving the accuracy, precision, calibration, and product quality of remote-sensing data, leveraging years of multiscale optical system geometric and radiometric calibration and characterization experience. The ECCOE Landsat Cal/Val Team continually...
Fish composition in a complex freshwater estuary: Environmental DNA metabarcoding versus capture surveys
Anett S Trebitz, Joel C. Hoffman, Gregory S. Peterson, Chelsea I. Hatzenbuhler, Erik M. Pilgrim, Sara L. Okum, W. Lindsay Chadderton, Andrew J. Tucker, Nicholas Bogyo, Jared Thomas Myers
2025, Transactions of the American Fisheries Society (154) 657-674
ObjectiveThe potential for environmental DNA (eDNA) to disperse widely from source organisms enables high detection efficiency but raises questions about eDNA's ability to differentiate fine-scale spatial patterns relative to conventional fish capture data.MethodsWe evaluate these questions in the St. Louis River estuary—a...
Critical mineral inventory of select IOA-IOCG deposits, southwestern USA
Ryan D. Taylor, Corey J. Meighan, Albert H. Hofstra
2025, Conference Paper
Critical minerals are necessary for modern technology and strategic purposes. Their increasing importance requires finding new and nontraditional resources. Samples of ore, altered, and unaltered host rock were collected from 26 iron mines and prospects in California, Nevada, and Utah to assess the potential of these deposits to host economic...
Assessing diet and genotyping success of goat pellet surveys from 2019 in Glacier National Park
Salix Scoresby, Lindsay M Dose, Jami Belt, Tabitha A. Graves
2025, Report
Fecal pellets contain genetic information and can be used to identify individuals, their diet, and more. Individual identification can be useful in understanding movements of individuals, developing population estimates, assessing vital rates, genetic diversity and structure, and evaluating trends over time (e.g., Epps et al 2024). Successful genotyping depends on...
Disturbance is the primary determinant of food chain length when the top predator is constant
Sarah F. Sorensen, Daniel D. Magoulick
2025, Journal of Freshwater Ecology (40)
Food chain length (FCL) is a primary determinant of food web structure and is hypothesized to be influenced by habitat size, productivity, and disturbance. Understanding the environmental characteristics that determine food chain length can assist in understanding how food webs may be impacted due to changes in habitats and environmental...
Living with wildfire in Estes Valley Fire Protection District, Larimer County, Colorado: 2023 Data report
Colleen Donovan, Patricia A. Champ, Suzanne Wittenbrink, Wilynn Formeller, Christine Taniguchi, Jon Landkamer, Hannah Brenkert-Smith, James Meldrum, Christopher M. Barth, Carolyn Wagner
2025, Research Note RMRS-RN-108
Homeowner wildfire risk mitigation and preparedness are critical components of community wildfire readiness. This report describes the data collected through two efforts conducted in the Estes Valley Fire Protection District of Larimer County, Colorado, study area: (1) parcel-level rapid wildfire risk assessments performed by trained assessors and (2) homeowner surveys...
Comparison of creek and bay influences on salt marsh sediment budget and deposition patterns
Lukas T. WinklerPrins, Jessica R. Lacy, Mark T. Stacey, Karen M. Thorne, McKenna Leigh Bristow, Scott Jones
2025, Earth Surface Processes and Landforms (50)
The resilience of salt marshes with low organic production depends on their effective capture and retention of mineral sediment from adjacent waters. Little prior work has directly compared mechanisms of sediment import from wave-influenced marsh boundaries against those of tidal creeks. We used simultaneous deployment of net-deposition tiles and oceanographic...
Perfluorodecanoic acid (PFDA) disrupts immune regulation via the toll-like receptor signaling pathway in zebrafish
Jiazhen Wang, Di Fang, Jason Tyler Magnuson, Bentuo Xu, Chunmiao Zheng, Liang Tang, Wenhui Qiu
2025, Environmental Science & Technology (59) 19119-19130
As there are a growing number of per- and polyfluoroalkyl substances (PFAS) alternative substitutes applied globally, it remains paramount to characterize their potential health risks. Perfluorodecanoic acid (PFDA) is the most common alternative PFAS detected in the environment; however, its toxic effects and underlying mechanism of action to aquatic biota...
Long‐term regime shifts in xeric ecoregion freshwater fish assemblages due to Anthropogenic and climate stressors
Corey A. Krabbenhoft, Jane S. Rogosch, Freya Elizabeth Rowland
2025, Ecology and Evolution (15)
Shifting climate regimes are projected to increase the area of xeric regions and result in more pronounced intermittency across river networks. Given these projected changes, we aim to understand the factors contributing to species persistence under increasing aridity. To investigate how changing flow regimes are related to...
Melt generation sources and conditions in the wake of a migrating slab window: Geochemistry and petrology of the million-year history of primitive volcanism at Clear Lake volcanic field, California
Dawnika L. Blatter, Seth D. Burgess
2025, Journal of Petrology (66)
Clear Lake volcanic field (CLVF) is the northernmost and youngest (~2.2 Ma to 8 ka) of the volcanic centers distributed along the San Andreas transform fault in western California. The initial phase of CLVF volcanism (interval one) occurred between ~2.2 and 1.3 Ma and extends ~35 km southeast of Clear Lake, forming a semi-continuous...
A spatiotemporal deep learning approach for predicting daily air-water temperature signal coupling and identification of key watershed physical parameters in a montane watershed
Mohammad Reza M. Behbahani, David M. Rey, Martin A. Briggs, Amvrossios Bagtzoglou
2025, Journal of Hydrology (663)
Seasonal shifts from runoff to groundwater dominance influence daily headwater stream temperatures, especially where local groundwater input is strong. This input buffers temperature during hot periods, supporting cold-water habitats. Recent studies use air–water temperature signal metrics to identify zones of...